{"title":"Crystal structures of six complexes of phosphane chalcogenides R1R2R3PE (R = tert-butyl or isopropyl, E = S or Se) with the metal halides MX2 (M = Pd or Pt, X = Cl or Br), two halochalcogenylphosphonium derivatives (tBu2iPrPEBr)2[Pd2Br6] and one hydrolysis product","authors":"Daniel Upmann , Peter G. Jones","doi":"10.1107/S2056989025000805","DOIUrl":"10.1107/S2056989025000805","url":null,"abstract":"<div><div>Various compounds involving trialkylphosphane chalcogenides (or their derivatives) and palladium or platinum dihalides were structurally characterized and their intra- and intermolecular interactions and metrical parameters were analysed. General comments on the SFAC command are also included.</div></div><div><div>The <em>L</em><sub>2</sub><em>MX</em><sub>2</sub> complexes <strong>1</strong>–<strong>5</strong> (<strong>1</strong>: <em>L</em> = <sup><em>t</em></sup>Bu<sup>i</sup>Pr<sub>2</sub>PSe, <em>M</em> = Pd, <em>X</em> = Cl; <strong>2</strong>: <em>L</em> = <sup><em>t</em></sup>Bu<sub>2</sub><sup>i</sup>PrPSe, <em>M</em> = Pd, <em>X</em> = Cl; <strong>3</strong>: <em>L</em> = <sup><em>t</em></sup>Bu<sub>2</sub><sup>i</sup>PrPSe, <em>M</em> = Pd, <em>X</em> = Br; <strong>4</strong>: <em>L</em> = <sup><em>t</em></sup>Bu<sub>2</sub><sup>i</sup>PrPS, <em>M</em> = Pd, <em>X</em> = Br; <strong>5</strong>: <em>L</em> = <sup><em>t</em></sup>Bu<sub>2</sub><sup>i</sup>PrPS, <em>M</em> = Pt, <em>X</em> = Cl) {systematic names: (<em>tert</em>-butyldiisopropylphosphine selenide-κ<em>Se</em>)dichloridopalladium(II), [PdCl<sub>2</sub>(C<sub>10</sub>H<sub>23</sub>PSe)<sub>2</sub>] (<strong>1</strong>), (di-<em>tert</em>-butylisopropylphosphine selenide-κ<em>Se</em>)dichloridopalladium(II), [PdCl<sub>2</sub>(C<sub>11</sub>H<sub>25</sub>PSe)<sub>2</sub>] (<strong>2</strong>), dibromido(di-<em>tert</em>-butylisopropylphosphine selenide-κ<em>Se</em>)palladium(II), [PdBr<sub>2</sub>(C<sub>11</sub>H<sub>25</sub>PSe)<sub>2</sub>] (<strong>3</strong>), dibromido(di-<em>tert</em>-butylisopropylphosphine sulfide-κ<em>S</em>)palladium(II), [PdBr<sub>2</sub>(C<sub>11</sub>H<sub>25</sub>PS)<sub>2</sub>] (<strong>4</strong>), dichlorido(di-<em>tert</em>-butylisopropylphosphine sulfide-κ<em>S</em>)palladium(II), [PdCl<sub>2</sub>(C<sub>11</sub>H<sub>25</sub>PS)<sub>2</sub>] (<strong>5</strong>)} all display a <em>trans</em> configuration with square-planar geometry at the metal atom. Compounds <strong>2</strong> and <strong>3</strong> are isotypic. The molecules of <strong>1</strong> and <strong>4</strong> display crystallographic inversion symmetry; compound <strong>5</strong> involves two independent molecules, each with inversion symmetry but with differing orientations of the trialkylphosphane groups. Chemically equivalent bond lengths all lie in narrow ranges, whereby the values for palladium and platinum compounds scarcely differ. Compound <strong>6</strong>, (<sup><em>t</em></sup>Bu<sup>i</sup>Pr<sub>2</sub>PS)<sub>2</sub>Pd<sub>2</sub>Cl<sub>4</sub> {systematic name: di-μ-chlorido-bis[(<em>tert</em>-butyldiisopropylphosphine sulfide-κ<em>S</em>)chloridopalladium(II)], [PdCl<sub>2</sub>(C<sub>10</sub>H<sub>23</sub>PS)<sub>2</sub>]}, is dinuclear with a central Pd<sub>2</sub>Cl<sub>2</sub> ring, and displays crystallographic inversion symmetry. The bonds to the bridging are longer than those to the terminal chlorine atom","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 183-194"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891585/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603199","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alexander A. Sapronov , Evgeny A. Dukhnovsky , Alexey S. Kubasov , Alexander S. Novikov , Maria M. Grishina , Ekaterina V. Dobrokhotova , Milena R. Komarovskikh , Namiq Q. Shikhaliyev , Mehmet Akkurt , Ajaya Bhattarai , Alexander G. Tskhovrebov
{"title":"Synthesis, structural characterization, Hirshfeld surface analysis and QTAIM analysis of 3-(4-cyanothiophen-3-yl)-[1,2,4]selenadiazolo[4,5-a]pyridin-4-ium chloride","authors":"Alexander A. Sapronov , Evgeny A. Dukhnovsky , Alexey S. Kubasov , Alexander S. Novikov , Maria M. Grishina , Ekaterina V. Dobrokhotova , Milena R. Komarovskikh , Namiq Q. Shikhaliyev , Mehmet Akkurt , Ajaya Bhattarai , Alexander G. Tskhovrebov","doi":"10.1107/S205698902500115X","DOIUrl":"10.1107/S205698902500115X","url":null,"abstract":"<div><div>The title compound was produced by the reaction between 3,4-dicyanothiophene and 2-pyridylselenyl chloride and isolated as a salt that crystallizes in the triclinic space group <em>P</em>1. Notable features include strong chalcogen interactions (Se⋯Cl and Se⋯S), as revealed through Hirshfeld surface analysis, which also highlights significant contributions from N⋯H/H⋯N, C⋯H/H⋯C and H⋯H contacts in the crystal packing.</div></div><div><div>The title compound, C<sub>11</sub>H<sub>6</sub>N<sub>3</sub>SSe<sup>+</sup>·Cl<sup>−</sup>, produced by the reaction between 3,4-dicyanothiophene and 2-pyridylselenyl chloride was isolated as a salt that crystallizes in the triclinic space group <em>P</em>1. Notable features include strong chalcogen interactions (Se⋯Cl and Se⋯S), as revealed through Hirshfeld surface analysis, which also highlights significant contributions from N⋯H/H⋯N, C⋯H/H⋯C and H⋯H contacts in the crystal packing. Supramolecular interactions were further analysed using density functional theory (DFT) and quantum theory of atoms in molecules (QTAIM) at the ωB97XD/6–311++G** level of theory.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 224-228"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891582/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Eduardo L. Gutiérrez , Marcos G. Russo , Griselda E. Narda , Elena V. Brusau , Alejandro P. Ayala , Javier Ellena
{"title":"Supramolecular assembly of mebendazolium and dihydrogen phosphate ions in a new anthelmintic salt","authors":"Eduardo L. Gutiérrez , Marcos G. Russo , Griselda E. Narda , Elena V. Brusau , Alejandro P. Ayala , Javier Ellena","doi":"10.1107/S2056989025000714","DOIUrl":"10.1107/S2056989025000714","url":null,"abstract":"<div><div>A new mebendazolium dihydrogen phosphate phosphoric acid solid compound was obtained. As expected, the mebendazolium cation and the dihydrogen phosphate anion assemble in the solid state in an <em>R</em><sub>2</sub><sup>2</sup>(8) hydrogen-bond-driven supramolecular motif.</div></div><div><div>A new mebendazolium dihydrogen phosphate phosphoric acid solid material was obtained and characterized by single-crystal X-ray diffraction and complementary solid-state techniques {systematic name: 5-benzoyl-2-[(methoxycarbonyl)amino]-1<em>H</em>-1,3-benzodiazol-3-ium dihydrogen phosphate–phosphoric acid (1/1), C<sub>16</sub>H<sub>14</sub>N<sub>3</sub>O<sub>3</sub><sup>+</sup>·H<sub>2</sub>PO<sub>4</sub><sup>−</sup>·H<sub>3</sub>PO<sub>4</sub>}. Structure solution confirmed proton transfer from phosphoric acid towards the basic imidazole ring of mebendazole. The mebendazolium cation and the dihydrogen phosphate anion assemble in the solid state in a cyclic hydrogen-bond-driven supramolecular motif, as observed in all mebendazolium/oxyanions structures reported in the literature. This salt crystallizes in the monoclinic <em>P</em>2<sub>1</sub>/<em>c</em> (No. 14) space group. A detailed study of the crystal structure performed by atom-to-atom and global Hirshfeld surface analysis indicates that several hydrogen bonds act as the main intermolecular interactions stabillizing the material. The new material is stable up to 458 K.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 195-199"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891589/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603301","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Firudin I. Guseinov , Ksenia A. Afanaseva , Vera A.Vil , Bogdan I. Ugrak , Aida I. Samigullina , Ennio Zangrando , Alebel N. Belay
{"title":"Crystal structure of 1-[(4-chlorophenyl)diphenylylmethyl]-3-(trifluoromethyl)-1H-pyrazole","authors":"Firudin I. Guseinov , Ksenia A. Afanaseva , Vera A.Vil , Bogdan I. Ugrak , Aida I. Samigullina , Ennio Zangrando , Alebel N. Belay","doi":"10.1107/S2056989025001185","DOIUrl":"10.1107/S2056989025001185","url":null,"abstract":"<div><div>The title pyrazole derivative, which exhibits multiple intermolecular non-covalent interactions, was synthesized by the reaction of 3-(trifluoromethyl)-1<em>H</em>-pyrazole with chloro(4-chlorophenyl)methylene)dibenzene in the presence of K<sub>2</sub>CO<sub>3</sub> in tetrahydrofuran.</div></div><div><div>The title compound, C<sub>23</sub>H<sub>16</sub>ClF<sub>3</sub>N<sub>2</sub>, was synthesized from 3-(trifluoromethyl)-1<em>H</em>-pyrazole and chloro(4-chlorophenyl)methylene)dibenzene. The structure features intramolecular (Ph)C—H⋯N and intermolecular (Ph)C—H⋯F hydrogen bonds, as well as C—H⋯π-ring interactions between the phenyl and pyrazole rings.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 235-238"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891583/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603108","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Valentin Bationo , Konan René Kambo , Brahima Sorgho , Charles Bavouma Sombié , El Walda Thiam , Rasmané Semdé , Abdoulaye Djandé , Claude Lecomte , Emmanuel Wenger
{"title":"Synthesis and structure of 2-oxo-2H-chromen-4-yl 4-bromobenzoate: work carried out as part of the CNRS AFRAMED project","authors":"Valentin Bationo , Konan René Kambo , Brahima Sorgho , Charles Bavouma Sombié , El Walda Thiam , Rasmané Semdé , Abdoulaye Djandé , Claude Lecomte , Emmanuel Wenger","doi":"10.1107/S2056989025000246","DOIUrl":"10.1107/S2056989025000246","url":null,"abstract":"<div><div>In the title compound, the dihedral angle between the chromen-2-one ring system and the bromobenzene ring is 10.29 (6)°. In the crystal, the molecules are connected through C—H⋯O hydrogen bonds and π–π stacking interactions.</div></div><div><div>In the title compound, C<sub>16</sub>H<sub>9</sub>BrO<sub>4</sub>, the dihedral angle between the chromen-2-one ring system (r.m.s. deviation = 0.006 Å) and the bromobenzene ring is 10.29 (6)°. In the crystal, the molecules are connected through C—H⋯O hydrogen bonds and π–π stacking interactions. According to a Hirshfeld surface analysis, H⋯H (22.4%), O⋯H/H⋯O (23.6%) and C⋯H/H⋯C (21%) interactions are the most significant contributors to the crystal packing.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 200-203"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891593/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603326","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Synthesis and crystal structure of 5,10-dihydroxy-9-methoxy-2,2-dimethyl-12-(2-methylbut-3-en-2-yl)-2H,6H-pyrano[3,2-b]xanthen-6-one","authors":"Amporn Saekee , Chutima Kuhakarn , Khetpakorn Chakarawet , Sakchai Hongthong","doi":"10.1107/S2056989025001070","DOIUrl":"10.1107/S2056989025001070","url":null,"abstract":"<div><div>Methylation of the natural product macluraxanthone yielded its methoxy analog, which was characterized by a suite of spectroscopic and crystallographic techniques.</div></div><div><div>5,10-Dihydroxy-9-methoxy-2,2-dimethyl-12-(2-methylbut-3-en-2-yl)-2<em>H</em>,6<em>H</em>-pyrano[3,2-<em>b</em>]xanthen-6-one, C<sub>24</sub>H<sub>24</sub>O<sub>6</sub> (<strong>2</strong>), is a prenylated xanthone that was synthesized from 5,9,10-trihydroxy-2,2-dimethyl-12-(2-methylbut-3-en-2-yl)-2<em>H</em>,6<em>H</em>-pyrano[3,2-<em>b</em>]xanthen-6-one or macluraxanthone (<strong>1</strong>), a known compound isolated from <em>Garcinia schomburgkiana</em> Pierre. The present study describes the synthesis of compound <strong>2</strong> by methylation reaction of <strong>1</strong>, and its crystallographic characterization. Compound 2 features a planar xanthone core and a bent pyrano ring adopting a half-boat conformation. An intermolecular O—H⋯O hydrogen bond between the hydroxyl hydrogen donor and the ketone acceptor organizes the molecules into a one-dimensional network along the <em>b</em>-axis direction. Perpendicular to this network, π–π stacking interactions form the three-dimensional supramolecular architecture. These two key intermolecular interactions are distinctly revealed in the Hirshfeld surface analysis.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 219-223"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891587/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Crystal structure of catena-poly[[[tetraaquacobalt(II)]-μ2-1,5-dihydroxynaphthalene-2,6-dicarboxylato] dimethylformamide disolvate]","authors":"Hitoshi Kumagai , Satoshi Kawata , Nobuhiro Ogihara","doi":"10.1107/S2056989025000982","DOIUrl":"10.1107/S2056989025000982","url":null,"abstract":"<div><div>The asymmetric unit of the title compound, {[Co(C<sub>12</sub>H<sub>6</sub>O<sub>6</sub>)(H<sub>2</sub>O)<sub>4</sub>]·2C<sub>3</sub>H<sub>7</sub>NO}<sub><em>n</em></sub> or {[Co(H<sub>2</sub>dondc)(H<sub>2</sub>O)<sub>4</sub>]·2DMF}<sub><em>n</em></sub>, comprises half of a Co<sup>II</sup> ion, half of a 1,5-dihydroxynaphthalene-2,6-dicarboxylate dianion (H<sub>2</sub>dondc<sup>2−</sup>), two water molecules and a dimethylformamide (DMF) molecule. The key feature of the structure is a three-dimensional hydrogen-bonding network that consists of one-dimensional (1D) coordination chains built up by CoO<sub>6</sub> octahedra bridged by H<sub>2</sub>dondc<sup>2−</sup> ligands and interchain O–H⋯O hydrogen-bonding interactions.</div></div><div><div>The asymmetric unit of the title compound, {[Co(C<sub>12</sub>H<sub>6</sub>O<sub>6</sub>)(H<sub>2</sub>O)<sub>4</sub>]·2C<sub>3</sub>H<sub>7</sub>NO}<sub><em>n</em></sub> or {[Co(H<sub>2</sub>dondc)(H<sub>2</sub>O)<sub>4</sub>]·2DMF}<sub><em>n</em></sub>, comprises half of a Co<sup>II</sup> ion, half of a 1,5-dihydroxynaphthalene-2,6-dicarboxylate dianion (H<sub>2</sub>dondc<sup>2−</sup>), two water molecules and a dimethylformamide (DMF) molecule. The Co<sup>II</sup> ion, which is located on a crystallographic inversion center, exhibits a distorted six-coordinated octahedral geometry with two oxygen atoms of the H<sub>2</sub>dondc<sup>2−</sup> ligand and four oxygen atoms of the water molecules. The carboxylate group is almost coplanar with the naphthalene moiety and shows monodentate coordination to the Co<sup>II</sup> ion. The Co<sup>II</sup> ions are bridged by the H<sub>2</sub>dondc<sup>2−</sup> ligand to form a one-dimensional chain. The hydroxy groups of the ligand have intra-chain hydrogen bonding interactions with coordinated water molecules. The coordinated water molecules exhibit not only intra-chain hydrogen bonding interactions, but also inter-chain hydrogen-bonding interactions. The chains are connected by inter-chain hydrogen-bonding interactions and are arranged in parallel to form a two-dimensional network. The chains are further connected by inter-chain hydrogen-bonding interactions <em>via</em> the DMF molecules and C—H⋯π interactions to give a three-dimensional network.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 204-207"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891581/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603378","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
M. Sunitha Kumari , M. Harish Kumar , D. V. Deevith , H. C. Devarajegowda , B. S. Palakshamurthy
{"title":"Crystal structure, Hirshfeld surface, DFT, molecular docking of 1-[(6-tert-butyl-2-oxo-2H-chromen-4-yl)methyl]-4,4-dimethylpiperidine-2,6-dione and cytotoxic effects on breast cancer (MDA-MB 231), human alveolar basal epithelial (A549) cell lines","authors":"M. Sunitha Kumari , M. Harish Kumar , D. V. Deevith , H. C. Devarajegowda , B. S. Palakshamurthy","doi":"10.1107/S2056989025001550","DOIUrl":"10.1107/S2056989025001550","url":null,"abstract":"<div><div>The title compound was synthesized by S<sub>N</sub>2 reaction of bromomethyl coumarin with 4,4-dimethylpiperidine-2,6-dione. Its crystal structure was determined and a Hirshfeld surface analysis was performed along with DFT, molecular docking and biological activity studies.</div></div><div><div>The title compound, C<sub>21</sub>H<sub>25</sub>NO<sub>4</sub>, was synthesized by S<sub>N</sub>2 reaction of bromomethyl coumarin with 4,4-dimethylpiperidine-2,6-dione. The molecule crystalizes in the monoclinic system with space group <em>C</em>2/<em>c</em>. The coumarin unit is almost planar with a dihedral angle between the aromatic rings of 0.81 (2)° and an r.m.s deviation of 0.042 Å. The piperidine ring adopts a chair conformation with the two methyl groups, one methyl group occupying an axial position and the other an equatorial position, exhibiting maximum stability. In the crystal, C—H⋯O interactions lead to the formation of head-to-head dimers with an <em>R</em><sub>2</sub><sup>2</sup>(8)graph-set motif and <em>R</em><sub>2</sub><sup>1</sup>(9) and <em>R</em><sub>2</sub><sup>2</sup>(10) ring motifs along [001] and [100]. π–π interactions [centroid–centroid distances = 3.885 (2) and 3.744 (2) Å] are also observed. A Hirshfeld surface analysis was carried out, with the two-dimensional fingerprint plots indicating that the major contributions to the crystal packing are from H⋯H(57%), O⋯H(29.3%) and C⋯H(8.1%) interactions. The energy framework calculations reveal that dispersion energy (<em>E</em><sub>dis</sub>= −267.7 kJ mol<sup>−1</sup>) dominates the other energies. The molecular structure was optimized by density functional theory calculations using the B3LYP/6–311+G(d,p) basis set. The HOMO and LOMO orbitals were generated to determine the energy gap, which is 4.245 eV. Molecular docking studies were carried out for the title molecule as ligand and a protein as receptor giving binding affinities of −9.5 kcal mol<sup>−1</sup> for PDB ID: 5HG8 and −8.2 kcal mol<sup>−1</sup> for PDB ID:6 NLV. The compound was further subjected to biological studies against human cancer cell lines, namely cryopreserved triple negative human breast adenocarcinoma cells (MDA-MB-231cells) and adenocarcinomic human alveolar basal epithelial cells (A549 cells) giving IC<sub>50</sub>values of 11.57 and 9.34 µ<em>M</em>, respectively. The cytotoxicity results showed a good safety profile against HEK293 cell lines.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 257-263"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891594/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603191","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Atash V. Gurbanov , Tuncer Hökelek , Gunay Z. Mammadova , Khudayar I. Hasanov , Tahir A. Javadzade , Alebel N. Belay
{"title":"Synthesis, crystal structure, Hirshfeld surface and crystal void analysis of 4-fluorobenzo[c][1,2,5]selenadiazol-1-ium chloride","authors":"Atash V. Gurbanov , Tuncer Hökelek , Gunay Z. Mammadova , Khudayar I. Hasanov , Tahir A. Javadzade , Alebel N. Belay","doi":"10.1107/S2056989025001379","DOIUrl":"10.1107/S2056989025001379","url":null,"abstract":"<div><div>Charge-assisted chalcogen bonds with Se⋯Cl separations of 2.883 (2) and 3.030 (2) Å aggregate the title compound into a supramolecular dimer.</div></div><div><div>The asymmetric unit of the title salt, C<sub>6</sub>H<sub>4</sub>FN<sub>2</sub>Se<sup>+</sup>·Cl<sup>−</sup>, contains one planar 4-fluorobenzo[<em>c</em>][1,2,5]selenadiazol-1-ium molecular cation and a chloride anion. In the crystal, intermolecular N—H⋯Cl hydrogen bonds link the 4-fluorobenzo[<em>c</em>][1,2,5]selenadiazol-1-ium molecules, which are arranged in parallel layers along (104), to the chloride anions. The cationic layers, in turn, are stacked along [001]. A Hirshfeld surface analysis of the crystal structure indicates that the most important contributions for the crystal packing are from H⋯Cl/Cl⋯H (22.6%), H⋯F/F⋯H (13.9%), H⋯N/N⋯H (11.9%), H⋯C/C⋯H (10.2%) and H⋯H (7.7%) interactions. The volume of the crystal voids and the percentage of free space were calculated to be 44.80 Å<sup>3</sup> and 5.91%, showing that there is no large cavity in the crystal packing.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 252-256"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891591/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603293","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Ryan E. Mewis , Matthew C. Hulme , Jack Marron , Stuart K. Langley , Oliver B. Sutcliffe , Sophie L. Benjamin
{"title":"Synthesis and crystal structures of five fluorinated diphenidine derivatives","authors":"Ryan E. Mewis , Matthew C. Hulme , Jack Marron , Stuart K. Langley , Oliver B. Sutcliffe , Sophie L. Benjamin","doi":"10.1107/S2056989025001288","DOIUrl":"10.1107/S2056989025001288","url":null,"abstract":"<div><div>The crystal structures of five fluorinated diphenidine molecules obtained as their hydrochloride salts are reported.</div></div><div><div>Diphenidine (<strong>1a</strong>), a dissociative anaesthetic, was first reported in 2013. Since then, a number of derivatives <em>e.g.</em> 2-methoxphenidine (<strong>1b</strong>) have been produced by clandestine laboratories and sold as <em>research chemicals</em>. Fluorinated diphenidines, namely, [1-(2,6-difluorophenyl)-2-phenylethyl]dimethylazanium chloride, C<sub>16</sub>H<sub>18</sub>F<sub>2</sub>N<sup>+</sup>·Cl<sup>−</sup>, (<strong>I</strong>), [1-(2,6-difluorophenyl)-2-phenylethyl](ethyl)azanium chloride dichloromethane hemisolvate, 2C<sub>16</sub>H<sub>18</sub>F<sub>2</sub>N<sup>+</sup>·2Cl<sup>−</sup>·CH<sub>2</sub>Cl<sub>2</sub>, (<strong>II</strong>), <em>tert</em>-butyl[1-(2,6-difluorophenyl)-2-phenylethyl]azanium chloride, C<sub>18</sub>H<sub>22</sub>F<sub>2</sub>N<sup>+</sup>·Cl<sup>−</sup>, (<strong>III</strong>), 1-[1-(2,6-difluorophenyl)-2-phenylethyl]pyrrolidin-1-ium chloride, C<sub>18</sub>H<sub>20</sub>F<sub>2</sub>N<sup>+</sup>·Cl<sup>−</sup>, (<strong>IV</strong>), and 1-[1-(2,3,4,5,6-pentafluorophenyl)-2-phenylethyl]piperidin-1-ium chloride, C<sub>19</sub>H<sub>19</sub>F<sub>5</sub>N<sup>+</sup>·Cl<sup>−</sup>, (<strong>V</strong>), were synthesized and structurally characterized by <sup>1</sup>H, <sup>13</sup>C and <sup>19</sup>F NMR spectroscopy, and single-crystal X-ray diffraction. All five structures exhibit hydrogen bonding between the quaternary amine hydrogen atoms and the chlorine. The N—H⋯Cl distances for (<strong>II</strong>) and (<strong>III</strong>) range from 2.21 to 2.31 Å, whereas (<strong>I</strong>), (<strong>IV</strong>) and (<strong>V</strong>) exhibit shorter N—H⋯Cl distances (2.07–2.20 Å). Compounds (<strong>IV</strong>) and (<strong>V</strong>) include pyrrolidine and piperidine rings, respectively; the pyrrolidine ring adopts an envelope conformation whereas the piperidine ring adopts a chair conformation. The crystal packing in compounds (<strong>I</strong>)–(<strong>V</strong>) is characterized by C—H⋯π interactions; no π–π interactions are observed.</div></div>","PeriodicalId":7367,"journal":{"name":"Acta Crystallographica Section E: Crystallographic Communications","volume":"81 3","pages":"Pages 229-234"},"PeriodicalIF":0.5,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11891590/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143603319","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}