Frontiers in neuroimaging最新文献

{"title":"Resting-state functional MRI in treatment-resistant schizophrenia.","authors":"Noora Tuovinen,&nbsp;Alex Hofer","doi":"10.3389/fnimg.2023.1127508","DOIUrl":"https://doi.org/10.3389/fnimg.2023.1127508","url":null,"abstract":"<p><strong>Background: </strong>Abnormalities in brain regions involved in the pathophysiology of schizophrenia (SCZ) may present insight into individual clinical symptoms. Specifically, functional connectivity irregularities may provide potential biomarkers for treatment response or treatment resistance, as such changes can occur before any structural changes are visible. We reviewed resting-state functional magnetic resonance imaging (rs-fMRI) findings from the last decade to provide an overview of the current knowledge on brain functional connectivity abnormalities and their associations to symptoms in treatment-resistant schizophrenia (TRS) and ultra-treatment-resistant schizophrenia (UTRS) and to look for support for the dysconnection hypothesis.</p><p><strong>Methods: </strong>PubMed database was searched for articles published in the last 10 years applying rs-fMRI in TRS patients, i.e., who had not responded to at least two adequate treatment trials with different antipsychotic drugs.</p><p><strong>Results: </strong>Eighteen articles were selected for this review involving 648 participants (TRS and control cohorts). The studies showed frontal hypoconnectivity before the initiation of treatment with CLZ or riluzole, an increase in frontal connectivity after riluzole treatment, fronto-temporal hypoconnectivity that may be specific for non-responders, widespread abnormal connectivity during mixed treatments, and ECT-induced effects on the limbic system.</p><p><strong>Conclusion: </strong>Probably due to the heterogeneity in the patient cohorts concerning antipsychotic treatment and other clinical variables (e.g., treatment response, lifetime antipsychotic drug exposure, duration of illness, treatment adherence), widespread abnormalities in connectivity were noted. However, irregularities in frontal brain regions, especially in the prefrontal cortex, were noted which are consistent with previous SCZ literature and the dysconnectivity hypothesis. There were major limitations, as most studies did not differentiate between TRS and UTRS (i.e., CLZ-resistant schizophrenia) and investigated heterogeneous cohorts treated with mixed treatments (with or without CLZ). This is critical as in different subtypes of the disorder an interplay between dopaminergic and glutamatergic pathways involving frontal, striatal, and hippocampal brain regions in separate ways is likely. Better definitions of TRS and UTRS are necessary in future longitudinal studies to correctly differentiate brain regions underlying the pathophysiology of SCZ, which could serve as potential functional biomarkers for treatment resistance.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"2 ","pages":"1127508"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406237/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9956741","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Editorial: New insights into the disorder of brain connectivity in schizophrenia.","authors":"Weikai Li,&nbsp;Md Mamun Al-Amin,&nbsp;Aarti Nair","doi":"10.3389/fnimg.2023.1266695","DOIUrl":"https://doi.org/10.3389/fnimg.2023.1266695","url":null,"abstract":"COPYRIGHT © 2023 Li, Al-Amin and Nair. This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms. Editorial: New insights into the disorder of brain connectivity in schizophrenia","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"2 ","pages":"1266695"},"PeriodicalIF":0.0,"publicationDate":"2023-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10497853/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10591726","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Control-theoretic integration of stimulation and electrophysiology for cognitive enhancement.","authors":"Matthew F Singh, Michael W Cole, Todd S Braver, ShiNung Ching","doi":"10.3389/fnimg.2022.982288","DOIUrl":"10.3389/fnimg.2022.982288","url":null,"abstract":"<p><p>Transcranial electrical stimulation (tES) technology and neuroimaging are increasingly coupled in basic and applied science. This synergy has enabled individualized tES therapy and facilitated causal inferences in functional neuroimaging. However, traditional tES paradigms have been stymied by relatively small changes in neural activity and high inter-subject variability in cognitive effects. In this perspective, we propose a tES framework to treat these issues which is grounded in dynamical systems and control theory. The proposed paradigm involves a tight coupling of tES and neuroimaging in which M/EEG is used to parameterize generative brain models as well as control tES delivery in a hybrid closed-loop fashion. We also present a novel quantitative framework for cognitive enhancement driven by a new computational objective: shaping how the brain reacts to potential \"inputs\" (e.g., task contexts) rather than enforcing a fixed pattern of brain activity.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"982288"},"PeriodicalIF":0.0,"publicationDate":"2022-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406304/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10319940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Automatic measure and normalization of spinal cord cross-sectional area using the pontomedullary junction.","authors":"Sandrine Bédard, Julien Cohen-Adad","doi":"10.3389/fnimg.2022.1031253","DOIUrl":"10.3389/fnimg.2022.1031253","url":null,"abstract":"<p><p>Spinal cord cross-sectional area (CSA) is a relevant biomarker to assess spinal cord atrophy in neurodegenerative diseases. However, the considerable inter-subject variability among healthy participants currently limits its usage. Previous studies explored factors contributing to the variability, yet the normalization models required manual intervention and used vertebral levels as a reference, which is an imprecise prediction of the spinal levels. In this study we implemented a method to measure CSA automatically from a spatial reference based on the central nervous system (the pontomedullary junction, PMJ), we investigated factors to explain variability, and developed normalization strategies on a large cohort (<i>N</i> = 804). Following automatic spinal cord segmentation, vertebral labeling and PMJ labeling, the spinal cord CSA was computed on T1w MRI scans from the UK Biobank database. The CSA was computed using two methods. For the first method, the CSA was computed at the level of the C2-C3 intervertebral disc. For the second method, the CSA was computed at 64 mm caudally from the PMJ, this distance corresponding to the average distance between the PMJ and the C2-C3 disc across all participants. The effect of various demographic and anatomical factors was explored, and a stepwise regression found significant predictors; the coefficients of the best fit model were used to normalize CSA. CSA measured at C2-C3 disc and using the PMJ differed significantly (paired <i>t</i>-test, <i>p</i>-value = 0.0002). The best normalization model included thalamus, brain volume, sex and the interaction between brain volume and sex. The coefficient of variation went down for PMJ CSA from 10.09 (without normalization) to 8.59%, a reduction of 14.85%. For CSA at C2-C3, it went down from 9.96 to 8.42%, a reduction of 15.13 %. This study introduces an end-to-end automatic pipeline to measure and normalize cord CSA from a neurological reference. This approach requires further validation to assess atrophy in longitudinal studies. The inter-subject variability of CSA can be partly accounted for by demographics and anatomical factors.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"1031253"},"PeriodicalIF":0.0,"publicationDate":"2022-11-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406309/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10319949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Influence of contrast and texture based image modifications on the performance and attention shift of U-Net models for brain tissue segmentation.","authors":"Suhang You,&nbsp;Mauricio Reyes","doi":"10.3389/fnimg.2022.1012639","DOIUrl":"10.3389/fnimg.2022.1012639","url":null,"abstract":"<p><p>Contrast and texture modifications applied during training or test-time have recently shown promising results to enhance the generalization performance of deep learning segmentation methods in medical image analysis. However, a deeper understanding of this phenomenon has not been investigated. In this study, we investigated this phenomenon using a controlled experimental setting, using datasets from the Human Connectome Project and a large set of simulated MR protocols, in order to mitigate data confounders and investigate possible explanations as to why model performance changes when applying different levels of contrast and texture-based modifications. Our experiments confirm previous findings regarding the improved performance of models subjected to contrast and texture modifications employed during training and/or testing time, but further show the interplay when these operations are combined, as well as the regimes of model improvement/worsening across scanning parameters. Furthermore, our findings demonstrate a spatial attention shift phenomenon of trained models, occurring for different levels of model performance, and varying in relation to the type of applied image modification.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"1012639"},"PeriodicalIF":0.0,"publicationDate":"2022-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406260/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10319939","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Aberrant resting-state functional connectivity in incarcerated women with elevated psychopathic traits.","authors":"Corey H Allen, J Michael Maurer, Bethany G Edwards, Aparna R Gullapalli, Carla L Harenski, Keith A Harenski, Vince D Calhoun, Kent A Kiehl","doi":"10.3389/fnimg.2022.971201","DOIUrl":"10.3389/fnimg.2022.971201","url":null,"abstract":"<p><p>Previous work in incarcerated men suggests that individuals scoring high on psychopathy exhibit aberrant resting-state paralimbic functional network connectivity (FNC). However, it is unclear whether similar results extend to women scoring high on psychopathy. This study examined whether psychopathic traits [assessed <i>via</i> the Hare Psychopathy Checklist - Revised (PCL-R)] were associated with aberrant inter-network connectivity, intra-network connectivity (i.e., functional coherence within a network), and amplitude of fluctuations across limbic and surrounding paralimbic regions among incarcerated women (<i>n</i> = 297). Resting-state networks were identified by applying group Independent Component Analysis to resting-state fMRI scans. We tested the association of psychopathic traits (PCL-R Factor 1 measuring interpersonal/affective psychopathic traits and PCL-R Factor 2 assessing lifestyle/antisocial psychopathic traits) to the three FNC measures. PCL-R Factor 1 scores were associated with increased low-frequency fluctuations in executive control and attentional networks, decreased high-frequency fluctuations in executive control and visual networks, and decreased intra-network FNC in default mode network. PCL-R Factor 2 scores were associated with decreased high-frequency fluctuations and default mode networks, and both increased and decreased intra-network functional connectivity in visual networks. Similar to previous analyses in incarcerated men, our results suggest that psychopathic traits among incarcerated women are associated with aberrant intra-network amplitude fluctuations and connectivity across multiple networks including limbic and surrounding paralimbic regions.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"971201"},"PeriodicalIF":0.0,"publicationDate":"2022-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406317/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10338074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"DORIS: A diffusion MRI-based 10 tissue class deep learning segmentation algorithm tailored to improve anatomically-constrained tractography.","authors":"Guillaume Theaud, Manon Edde, Matthieu Dumont, Clément Zotti, Mauro Zucchelli, Samuel Deslauriers-Gauthier, Rachid Deriche, Pierre-Marc Jodoin, Maxime Descoteaux","doi":"10.3389/fnimg.2022.917806","DOIUrl":"10.3389/fnimg.2022.917806","url":null,"abstract":"<p><p>Modern tractography algorithms such as anatomically-constrained tractography (ACT) are based on segmentation maps of white matter (WM), gray matter (GM), and cerebrospinal fluid (CSF). These maps are generally estimated from a T1-weighted (T1w) image and then registered in diffusion weighted images (DWI) space. Registration of T1w to diffusion space and partial volume estimation are challenging and rarely voxel-perfect. Diffusion-based segmentation would, thus, potentially allow not to have higher quality anatomical priors injected in the tractography process. On the other hand, even if FA-based tractography is possible without T1 registration, the literature shows that this technique suffers from multiple issues such as holes in the tracking mask and a high proportion of generated broken and anatomically implausible streamlines. Therefore, there is an important need for a tissue segmentation algorithm that works directly in the native diffusion space. We propose <b>DORIS</b>, a DWI-based deep learning segmentation algorithm. DORIS outputs 10 different tissue classes including WM, GM, CSF, ventricles, and 6 other subcortical structures (putamen, pallidum, hippocampus, caudate, amygdala, and thalamus). DORIS was trained and validated on a wide range of subjects, including 1,000 individuals from 22 to 90 years old from clinical and research DWI acquisitions, from 5 public databases. In the absence of a \"true\" ground truth in diffusion space, DORIS used a silver standard strategy from Freesurfer output registered onto the DWI. This strategy is extensively evaluated and discussed in the current study. Segmentation maps provided by DORIS are quantitatively compared to Freesurfer and FSL-fast and the impacts on tractography are evaluated. Overall, we show that DORIS is fast, accurate, and reproducible and that DORIS-based tractograms produce bundles with a longer mean length and fewer anatomically implausible streamlines.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"917806"},"PeriodicalIF":0.0,"publicationDate":"2022-09-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406193/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9957254","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Investigating the contribution of cytoarchitecture to diffusion MRI measures in gray matter using histology.","authors":"Madhura Baxi, Suheyla Cetin-Karayumak, George Papadimitriou, Nikos Makris, Andre van der Kouwe, Bruce Jenkins, Tara L Moore, Douglas L Rosene, Marek Kubicki, Yogesh Rathi","doi":"10.3389/fnimg.2022.947526","DOIUrl":"10.3389/fnimg.2022.947526","url":null,"abstract":"<p><p>Postmortem studies are currently considered a gold standard for investigating brain structure at the cellular level. To investigate cellular changes in the context of human development, aging, or disease treatment, non-invasive <i>in-vivo</i> imaging methods such as diffusion MRI (dMRI) are needed. However, dMRI measures are only indirect measures and require validation in gray matter (GM) in the context of their sensitivity to the underlying cytoarchitecture, which has been lacking. Therefore, in this study we conducted direct comparisons between <i>in-vivo</i> dMRI measures and histology acquired from the same four rhesus monkeys. Average and heterogeneity of fractional anisotropy and trace from diffusion tensor imaging and mean squared displacement (MSD) and return-to-origin-probability from biexponential model were calculated in nine cytoarchitectonically different GM regions using dMRI data. DMRI measures were compared with corresponding histology measures of regional average and heterogeneity in cell area density. Results show that both average and heterogeneity in trace and MSD measures are sensitive to the underlying cytoarchitecture (cell area density) and capture different aspects of cell composition and organization. Trace and MSD thus would prove valuable as non-invasive imaging biomarkers in future studies investigating GM cytoarchitectural changes related to development and aging as well as abnormal cellular pathologies in clinical studies.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"947526"},"PeriodicalIF":0.0,"publicationDate":"2022-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406256/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9968649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Extracting default mode network based on graph neural network for resting state fMRI study.","authors":"Donglin Wang, Qiang Wu, Don Hong","doi":"10.3389/fnimg.2022.963125","DOIUrl":"10.3389/fnimg.2022.963125","url":null,"abstract":"<p><p>Functional magnetic resonance imaging (fMRI)-based study of functional connections in the brain has been highlighted by numerous human and animal studies recently, which have provided significant information to explain a wide range of pathological conditions and behavioral characteristics. In this paper, we propose the use of a graph neural network, a deep learning technique called graphSAGE, to investigate resting state fMRI (rs-fMRI) and extract the default mode network (DMN). Comparing typical methods such as seed-based correlation, independent component analysis, and dictionary learning, real data experiment results showed that the graphSAGE is more robust, reliable, and defines a clearer region of interests. In addition, graphSAGE requires fewer and more relaxed assumptions, and considers the single subject analysis and group subjects analysis simultaneously.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"963125"},"PeriodicalIF":0.0,"publicationDate":"2022-09-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406295/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9966266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Characterization of Early Stage Parkinson's Disease From Resting-State fMRI Data Using a Long Short-Term Memory Network.","authors":"Xueqi Guo, Sule Tinaz, Nicha C Dvornek","doi":"10.3389/fnimg.2022.952084","DOIUrl":"10.3389/fnimg.2022.952084","url":null,"abstract":"<p><p>Parkinson's disease (PD) is a common and complex neurodegenerative disorder with five stages on the Hoehn and Yahr scaling. Characterizing brain function alterations with progression of early stage disease would support accurate disease staging, development of new therapies, and objective monitoring of disease progression or treatment response. Functional magnetic resonance imaging (fMRI) is a promising tool in revealing functional connectivity (FC) differences and developing biomarkers in PD. While fMRI and FC data have been utilized for diagnosis of PD through application of machine learning approaches such as support vector machine and logistic regression, the characterization of FC changes in early-stage PD has not been investigated. Given the complexity and non-linearity of fMRI data, we propose the use of a long short-term memory (LSTM) network to distinguish the early stages of PD and understand related functional brain changes. The study included 84 subjects (56 in stage 2 and 28 in stage 1) from the Parkinson's Progression Markers Initiative (PPMI), the largest-available public PD dataset. Under a repeated 10-fold stratified cross-validation, the LSTM model reached an accuracy of 71.63%, 13.52% higher than the best traditional machine learning method and 11.56% higher than a CNN model, indicating significantly better robustness and accuracy compared with other machine learning classifiers. Finally, we used the learned LSTM model weights to select the top brain regions that contributed to model prediction and performed FC analyses to characterize functional changes with disease stage and motor impairment to gain better insight into the brain mechanisms of PD.</p>","PeriodicalId":73094,"journal":{"name":"Frontiers in neuroimaging","volume":"1 ","pages":"952084"},"PeriodicalIF":0.0,"publicationDate":"2022-07-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10406199/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10420717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}