Acta Neuropathologica最新文献

{"title":"The parkin V380L variant is a genetic modifier of Machado–Joseph disease with impact on mitophagy","authors":"Jonasz J. Weber,&nbsp;Leah Czisch,&nbsp;Priscila Pereira Sena,&nbsp;Florian Fath,&nbsp;Chrisovalantou Huridou,&nbsp;Natasa Schwarz,&nbsp;Rana D. Incebacak Eltemur,&nbsp;Anna Würth,&nbsp;Daniel Weishäupl,&nbsp;Miriam Döcker,&nbsp;Gunnar Blumenstock,&nbsp;Sandra Martins,&nbsp;Jorge Sequeiros,&nbsp;Guy A. Rouleau,&nbsp;Laura Bannach Jardim,&nbsp;Maria-Luiza Saraiva-Pereira,&nbsp;Marcondes C. França Jr.,&nbsp;Carlos R. Gordon,&nbsp;Roy Zaltzman,&nbsp;Mario R. Cornejo-Olivas,&nbsp;Bart P. C. van de Warrenburg,&nbsp;Alexandra Durr,&nbsp;Alexis Brice,&nbsp;Peter Bauer,&nbsp;Thomas Klockgether,&nbsp;Ludger Schöls,&nbsp;Olaf Riess,&nbsp;The EUROSCA Network,&nbsp;Thorsten Schmidt","doi":"10.1007/s00401-024-02762-6","DOIUrl":"10.1007/s00401-024-02762-6","url":null,"abstract":"<div><p>Machado–Joseph disease (MJD) is an autosomal dominant neurodegenerative spinocerebellar ataxia caused by a polyglutamine-coding CAG repeat expansion in the <i>ATXN3</i> gene. While the CAG length correlates negatively with the age at onset, it accounts for approximately 50% of its variability only. Despite larger efforts in identifying contributing genetic factors, candidate genes with a robust and plausible impact on the molecular pathogenesis of MJD are scarce. Therefore, we analysed missense single nucleotide polymorphism variants in the <i>PRKN</i> gene encoding the Parkinson's disease-associated E3 ubiquitin ligase parkin, which is a well-described interaction partner of the MJD protein ataxin-3, a deubiquitinase. By performing a correlation analysis in the to-date largest MJD cohort of more than 900 individuals, we identified the V380L variant as a relevant factor, decreasing the age at onset by 3 years in homozygous carriers. Functional analysis in an MJD cell model demonstrated that parkin V380L did not modulate soluble or aggregate levels of ataxin-3 but reduced the interaction of the two proteins. Moreover, the presence of parkin V380L interfered with the execution of mitophagy—the autophagic removal of surplus or damaged mitochondria—thereby compromising cell viability. In summary, we identified the V380L variant in parkin as a genetic modifier of MJD, with negative repercussions on its molecular pathogenesis and disease age at onset.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11294389/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141858738","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Diffuse, IDH-wildtype gliomas in adults with minimal histological change and isolated TERT promoter mutation: not simply CNS WHO grade 4","authors":"L. P. Priesterbach-Ackley,&nbsp;F. Cordier,&nbsp;P. de Witt Hamer,&nbsp;T. J. Snijders,&nbsp;P. A. Robe,&nbsp;B. Küsters,&nbsp;W. W. J. de Leng,&nbsp;W. F. A. den Dunnen,&nbsp;D. Brandsma,&nbsp;C. Jansen,&nbsp;P. Wesseling,&nbsp;A. Muhlebner","doi":"10.1007/s00401-024-02773-3","DOIUrl":"10.1007/s00401-024-02773-3","url":null,"abstract":"","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11286727/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141787035","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"High throughput spatial immune mapping reveals an innate immune scar in post-COVID-19 brains","authors":"Marius Schwabenland,&nbsp;Dilara Hasavci,&nbsp;Sibylle Frase,&nbsp;Katharina Wolf,&nbsp;Nikolaus Deigendesch,&nbsp;Joerg M. Buescher,&nbsp;Kirsten D. Mertz,&nbsp;Benjamin Ondruschka,&nbsp;Hermann Altmeppen,&nbsp;Jakob Matschke,&nbsp;Markus Glatzel,&nbsp;Stephan Frank,&nbsp;Robert Thimme,&nbsp;Juergen Beck,&nbsp;Jonas A. Hosp,&nbsp;Thomas Blank,&nbsp;Bertram Bengsch,&nbsp;Marco Prinz","doi":"10.1007/s00401-024-02770-6","DOIUrl":"10.1007/s00401-024-02770-6","url":null,"abstract":"<div><p>The underlying pathogenesis of neurological sequelae in post-COVID-19 patients remains unclear. Here, we used multidimensional spatial immune phenotyping and machine learning methods on brains from initial COVID-19 survivors to identify the biological correlate associated with previous SARS-CoV-2 challenge. Compared to healthy controls, individuals with post-COVID-19 revealed a high percentage of TMEM119⁺P2RY12⁺CD68⁺Iba1⁺HLA-DR⁺CD11c⁺SCAMP2⁺ microglia assembled in prototypical cellular nodules. In contrast to acute SARS-CoV-2 cases, the frequency of CD8⁺ parenchymal T cells was reduced, suggesting an immune shift toward innate immune activation that may contribute to neurological alterations in post-COVID-19 patients.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11281987/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141764811","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Neuropathologically directed profiling of PRNP somatic and germline variants in sporadic human prion disease","authors":"Gannon A. McDonough,&nbsp;Yuchen Cheng,&nbsp;Katherine S. Morillo,&nbsp;Ryan N. Doan,&nbsp;Zinan Zhou,&nbsp;Connor J. Kenny,&nbsp;Aaron Foutz,&nbsp;Chae Kim,&nbsp;Mark L. Cohen,&nbsp;Brian S. Appleby,&nbsp;Christopher A. Walsh,&nbsp;Jiri G. Safar,&nbsp;August Yue Huang,&nbsp;Michael B. Miller","doi":"10.1007/s00401-024-02774-2","DOIUrl":"10.1007/s00401-024-02774-2","url":null,"abstract":"<div><p>Creutzfeldt–Jakob Disease (CJD), the most common human prion disease, is associated with pathologic misfolding of the prion protein (PrP), encoded by the <i>PRNP</i> gene. Of human prion disease cases, &lt; 1% were transmitted by misfolded PrP, ~ 15% are inherited, and ~ 85% are sporadic (sCJD). While familial cases are inherited through germline mutations in <i>PRNP</i>, the cause of sCJD is unknown. Somatic mutations have been hypothesized as a cause of sCJD, and recent studies have revealed that somatic mutations accumulate in neurons during aging. To investigate the hypothesis that somatic mutations in <i>PRNP</i> may underlie sCJD, we performed deep DNA sequencing of <i>PRNP</i> in 205 sCJD cases and 170 age-matched non-disease controls. We included 5 cases of Heidenhain variant sporadic CJD (H-sCJD), where visual symptomatology and neuropathology implicate localized initiation of prion formation, and examined multiple regions across the brain including in the affected occipital cortex. We employed Multiple Independent Primer PCR Sequencing (MIPP-Seq) with a median depth of &gt; 5000× across the <i>PRNP</i> coding region and analyzed for variants using MosaicHunter. An allele mixing experiment showed positive detection of variants in bulk DNA at a variant allele fraction (VAF) as low as 0.2%. We observed multiple polymorphic germline variants among individuals in our cohort. However, we did not identify bona fide somatic variants in sCJD, including across multiple affected regions in H-sCJD, nor in control individuals. Beyond our stringent variant-identification pipeline, we also analyzed VAFs from raw sequencing data, and observed no evidence of prion disease enrichment for the known germline pathogenic variants P102L, D178N, and E200K. The lack of <i>PRNP</i> pathogenic somatic mutations in H-sCJD or the broader cohort of sCJD suggests that clonal somatic mutations may not play a major role in sporadic prion disease. With H-sCJD representing a localized presentation of neurodegeneration, this serves as a test of the potential role of clonal somatic mutations in genes known to cause familial neurodegeneration.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141755202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Differences in the cerebral amyloid angiopathy proteome in Alzheimer’s disease and mild cognitive impairment","authors":"Dominique Leitner,&nbsp;Tomas Kavanagh,&nbsp;Evgeny Kanshin,&nbsp;Kaleah Balcomb,&nbsp;Geoffrey Pires,&nbsp;Manon Thierry,&nbsp;Jianina I. Suazo,&nbsp;Julie Schneider,&nbsp;Beatrix Ueberheide,&nbsp;Eleanor Drummond,&nbsp;Thomas Wisniewski","doi":"10.1007/s00401-024-02767-1","DOIUrl":"10.1007/s00401-024-02767-1","url":null,"abstract":"<div><p>Cerebral amyloid angiopathy (CAA) is characterized by amyloid beta (Aβ) deposition in cerebrovasculature. It is prevalent with aging and Alzheimer’s disease (AD), associated with intracerebral hemorrhage, and contributes to cognitive deficits. To better understand molecular mechanisms, CAA(+) and CAA(−) vessels were microdissected from paraffin-embedded autopsy temporal cortex of age-matched Control (<i>n </i>= 10), mild cognitive impairment (MCI; <i>n </i>= 4), and sporadic AD (<i>n </i>= 6) cases, followed by label-free quantitative mass spectrometry. 257 proteins were differentially abundant in CAA(+) vessels compared to neighboring CAA(−) vessels in MCI, and 289 in AD (<i>p </i>&lt; 0.05, fold-change &gt; 1.5). 84 proteins changed in the same direction in both groups, and many changed in the same direction among proteins significant in at least one group (<i>p </i>&lt; 0.0001, <i>R</i>² = 0.62). In CAA(+) vessels, proteins significantly increased in both AD and MCI were particularly associated with collagen-containing extracellular matrix, while proteins associated with ribonucleoprotein complex were significantly decreased in both AD and MCI. In neighboring CAA(−) vessels, 61 proteins were differentially abundant in MCI, and 112 in AD when compared to Control cases. Increased proteins in CAA(−) vessels were associated with extracellular matrix, external encapsulating structure, and collagen-containing extracellular matrix in MCI; collagen trimer in AD. Twenty two proteins were increased in CAA(−) vessels of both AD and MCI. Comparison of the CAA proteome with published amyloid-plaque proteomic datasets identified many proteins similarly enriched in CAA and plaques, as well as a protein subset hypothesized as preferentially enriched in CAA when compared to plaques. SEMA3G emerged as a CAA specific marker, validated immunohistochemically and with correlation to pathology levels (<i>p </i>&lt; 0.0001; <i>R</i>² = 0.90). Overall, the CAA(−) vessel proteomes indicated changes in vessel integrity in AD and MCI in the absence of Aβ, and the CAA(+) vessel proteome was similar in MCI and AD, which was associated with vascular matrix reorganization, protein translation deficits, and blood brain barrier breakdown.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11263258/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141747141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Amyloid-β peptide signature associated with cerebral amyloid angiopathy in familial Alzheimer’s disease with APPdup and Down syndrome","authors":"Amal Kasri,&nbsp;Elena Camporesi,&nbsp;Eleni Gkanatsiou,&nbsp;Susana Boluda,&nbsp;Gunnar Brinkmalm,&nbsp;Lev Stimmer,&nbsp;Junyue Ge,&nbsp;Jörg Hanrieder,&nbsp;Nicolas Villain,&nbsp;Charles Duyckaerts,&nbsp;Yannick Vermeiren,&nbsp;Sarah E. Pape,&nbsp;Gaël Nicolas,&nbsp;Annie Laquerrière,&nbsp;Peter Paul De Deyn,&nbsp;David Wallon,&nbsp;Kaj Blennow,&nbsp;Andre Strydom,&nbsp;Henrik Zetterberg,&nbsp;Marie-Claude Potier","doi":"10.1007/s00401-024-02756-4","DOIUrl":"10.1007/s00401-024-02756-4","url":null,"abstract":"<div><p>Alzheimer’s disease (AD) is characterized by extracellular amyloid plaques containing amyloid-β (Aβ) peptides, intraneuronal neurofibrillary tangles, extracellular neuropil threads, and dystrophic neurites surrounding plaques composed of hyperphosphorylated tau protein (pTau). Aβ can also deposit in blood vessel walls leading to cerebral amyloid angiopathy (CAA). While amyloid plaques in AD brains are constant, CAA varies among cases. The study focuses on differences observed between rare and poorly studied patient groups with <i>APP</i> duplications (<i>APP</i>dup) and Down syndrome (DS) reported to have higher frequencies of elevated CAA levels in comparison to sporadic AD (sAD), most of <i>APP</i> mutations, and controls. We compared Aβ and tau pathologies in <i>postmortem</i> brain tissues across cases and Aβ peptides using mass spectrometry (MS). We further characterized the spatial distribution of Aβ peptides with MS-brain imaging. While intraparenchymal Aβ deposits were numerous in sAD, DS with AD (DS-AD) and AD with <i>APP</i> mutations, these were less abundant in <i>APP</i>dup. On the contrary, Aβ deposits in the blood vessels were abundant in <i>APP</i>dup and DS-AD while only <i>APP</i>dup cases displayed high Aβ deposits in capillaries. Investigation of Aβ peptide profiles showed a specific increase in Aβx-37, Aβx-38 and Aβx-40 but not Aβx-42 in <i>APP</i>dup cases and to a lower extent in DS-AD cases. Interestingly, N-truncated Aβ2-x peptides were particularly increased in <i>APP</i>dup compared to all other groups. This result was confirmed by MS-imaging of leptomeningeal and parenchymal vessels from an <i>APP</i>dup case, suggesting that CAA is associated with accumulation of shorter Aβ peptides truncated both at N- and C-termini in blood vessels. Altogether, this study identified striking differences in the localization and composition of Aβ deposits between AD cases, particularly <i>APP</i>dup and DS-AD, both carrying three genomic copies of the <i>APP</i> gene. Detection of specific Aβ peptides in CSF or plasma of these patients could improve the diagnosis of CAA and their inclusion in anti-amyloid immunotherapy treatments.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11258176/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141722750","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Identification of a putative molecular subtype of adult-type diffuse astrocytoma with recurrent MAPK pathway alterations","authors":"Philipp Sievers,&nbsp;Franck Bielle,&nbsp;Kirsten Göbel,&nbsp;Daniel Schrimpf,&nbsp;Lucia Nichelli,&nbsp;Bertrand Mathon,&nbsp;Romain Appay,&nbsp;Henning B. Boldt,&nbsp;Hildegard Dohmen,&nbsp;Carmen Selignow,&nbsp;Till Acker,&nbsp;Ales Vicha,&nbsp;Horacio Martinetto,&nbsp;Leonille Schweizer,&nbsp;Ulrich Schüller,&nbsp;Sebastian Brandner,&nbsp;Pieter Wesseling,&nbsp;Simone Schmid,&nbsp;David Capper,&nbsp;Zied Abdullaev,&nbsp;Kenneth Aldape,&nbsp;Andrey Korshunov,&nbsp;Sandro M. Krieg,&nbsp;Wolfgang Wick,&nbsp;Stefan M. Pfister,&nbsp;Andreas von Deimling,&nbsp;David E. Reuss,&nbsp;David T. W. Jones,&nbsp;Felix Sahm","doi":"10.1007/s00401-024-02766-2","DOIUrl":"10.1007/s00401-024-02766-2","url":null,"abstract":"","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11258072/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141722845","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Anti-Ku + myositis: an acquired inflammatory protein-aggregate myopathy","authors":"Marie-Therese Holzer,&nbsp;Akinori Uruha,&nbsp;Andreas Roos,&nbsp;Andreas Hentschel,&nbsp;Anne Schänzer,&nbsp;Joachim Weis,&nbsp;Kristl G. Claeys,&nbsp;Benedikt Schoser,&nbsp;Federica Montagnese,&nbsp;Hans-Hilmar Goebel,&nbsp;Melanie Huber,&nbsp;Sarah Léonard-Louis,&nbsp;Ina Kötter,&nbsp;Nathalie Streichenberger,&nbsp;Laure Gallay,&nbsp;Olivier Benveniste,&nbsp;Udo Schneider,&nbsp;Corinna Preusse,&nbsp;Martin Krusche,&nbsp;Werner Stenzel","doi":"10.1007/s00401-024-02765-3","DOIUrl":"10.1007/s00401-024-02765-3","url":null,"abstract":"<div><p>Myositis with anti-Ku-autoantibodies is a rare inflammatory myopathy associated with various connective tissue diseases. Histopathological studies have identified inflammatory and necrotizing aspects, but a precise morphological analysis and pathomechanistic disease model are lacking. We therefore aimed to carry out an in-depth morpho-molecular analysis to uncover possible pathomechanisms. Muscle biopsy specimens from 26 patients with anti-Ku-antibodies and unequivocal myositis were analyzed by immunohistochemistry, immunofluorescence, transcriptomics, and proteomics and compared to biopsy specimens of non-disease controls, immune-mediated necrotizing myopathy (IMNM), and inclusion body myositis (IBM). Clinical findings and laboratory parameters were evaluated retrospectively and correlated with morphological and molecular features. Patients were mainly female (92%) with a median age of 56.5 years. Isolated myositis and overlap with systemic sclerosis were reported in 31%, respectively. Isolated myositis presented with higher creatine kinase levels and cardiac involvement (83%), whereas systemic sclerosis-overlap patients often had interstitial lung disease (57%). Histopathology showed a wide spectrum from mild to pronounced myositis with diffuse sarcolemmal MHC-class I (100%) and -II (69%) immunoreactivity, myofiber necrosis (88%), endomysial inflammation (85%), thickened capillaries (84%), and vacuoles (60%). Conspicuous sarcoplasmic protein aggregates were p62, BAG3, myotilin, or immunoproteasomal beta5i-positive. Proteomic and transcriptomic analysis identified prominent up-regulation of autophagy, proteasome, and hnRNP-related cell stress. To conclude, Ku + myositis is morphologically characterized by myofiber necrosis, MHC-class I and II positivity, variable endomysial inflammation, and distinct protein aggregation varying from IBM and IMNM, and it can be placed in the spectrum of scleromyositis and overlap myositis. It features characteristic sarcoplasmic protein aggregation on an acquired basis being functionally associated with altered chaperone, proteasome, and autophagy function indicating that Ku + myositis exhibit aspects of an acquired inflammatory protein-aggregate myopathy.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11252205/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141618978","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetic and epigenetic instability as an underlying driver of progression and aggressive behavior in IDH-mutant astrocytoma","authors":"Timothy E. Richardson,&nbsp;Jamie M. Walker,&nbsp;Dolores Hambardzumyan,&nbsp;Steven Brem,&nbsp;Kimmo J. Hatanpaa,&nbsp;Mariano S. Viapiano,&nbsp;Balagopal Pai,&nbsp;Melissa Umphlett,&nbsp;Oren J. Becher,&nbsp;Matija Snuderl,&nbsp;Samuel K. McBrayer,&nbsp;Kalil G. Abdullah,&nbsp;Nadejda M. Tsankova","doi":"10.1007/s00401-024-02761-7","DOIUrl":"10.1007/s00401-024-02761-7","url":null,"abstract":"<div><p>In recent years, the classification of adult-type diffuse gliomas has undergone a revolution, wherein specific molecular features now represent defining diagnostic criteria of IDH-wild-type glioblastomas, IDH-mutant astrocytomas, and IDH-mutant 1p/19q-codeleted oligodendrogliomas. With the introduction of the 2021 WHO CNS classification, additional molecular alterations are now integrated into the grading of these tumors, given equal weight to traditional histologic features. However, there remains a great deal of heterogeneity in patient outcome even within these established tumor subclassifications that is unexplained by currently codified molecular alterations, particularly in the IDH-mutant astrocytoma category. There is also significant intercellular genetic and epigenetic heterogeneity and plasticity with resulting phenotypic heterogeneity, making these tumors remarkably adaptable and robust, and presenting a significant barrier to the design of effective therapeutics. Herein, we review the mechanisms and consequences of genetic and epigenetic instability, including chromosomal instability (CIN), microsatellite instability (MSI)/mismatch repair (MMR) deficits, and epigenetic instability, in the underlying biology, tumorigenesis, and progression of IDH-mutant astrocytomas. We also discuss the contribution of recent high-resolution transcriptomics studies toward defining tumor heterogeneity with single-cell resolution. While intratumoral heterogeneity is a well-known feature of diffuse gliomas, the contribution of these various processes has only recently been considered as a potential driver of tumor aggressiveness. CIN has an independent, adverse effect on patient survival, similar to the effect of histologic grade and homozygous <i>CDKN2A</i> deletion, while MMR mutation is only associated with poor overall survival in univariate analysis but is highly correlated with higher histologic/molecular grade and other aggressive features. These forms of genomic instability, which may significantly affect the natural progression of these tumors, response to therapy, and ultimately clinical outcome for patients, are potentially measurable features which could aid in diagnosis, grading, prognosis, and development of personalized therapeutics.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11252228/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141618979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"DNA methylation patterns in the frontal lobe white matter of multiple system atrophy, Parkinson’s disease, and progressive supranuclear palsy: a cross-comparative investigation","authors":"Megha Murthy,&nbsp;Katherine Fodder,&nbsp;Yasuo Miki,&nbsp;Naiomi Rambarack,&nbsp;Eduardo De Pablo Fernandez,&nbsp;Lasse Pihlstrøm,&nbsp;Jonathan Mill,&nbsp;Thomas T. Warner,&nbsp;Tammaryn Lashley,&nbsp;Conceição Bettencourt","doi":"10.1007/s00401-024-02764-4","DOIUrl":"10.1007/s00401-024-02764-4","url":null,"abstract":"<div><p>Multiple system atrophy (MSA) is a rare neurodegenerative disease characterized by neuronal loss and gliosis, with oligodendroglial cytoplasmic inclusions (GCIs) containing α-synuclein being the primary pathological hallmark. Clinical presentations of MSA overlap with other parkinsonian disorders, such as Parkinson’s disease (PD), dementia with Lewy bodies (DLB), and progressive supranuclear palsy (PSP), posing challenges in early diagnosis. Numerous studies have reported alterations in DNA methylation in neurodegenerative diseases, with candidate loci being identified in various parkinsonian disorders including MSA, PD, and PSP. Although MSA and PSP present with substantial white matter pathology, alterations in white matter have also been reported in PD. However, studies comparing the DNA methylation architectures of white matter in these diseases are lacking. We therefore aimed to investigate genome-wide DNA methylation patterns in the frontal lobe white matter of individuals with MSA (<i>n</i> = 17), PD (<i>n</i> = 17), and PSP (<i>n</i> = 16) along with controls (<i>n</i> = 15) using the Illumina EPIC array, to identify shared and disease-specific DNA methylation alterations. Genome-wide DNA methylation profiling of frontal lobe white matter in the three parkinsonian disorders revealed substantial commonalities in DNA methylation alterations in MSA, PD, and PSP. We further used weighted gene correlation network analysis to identify disease-associated co-methylation signatures and identified dysregulation in processes relating to Wnt signaling, signal transduction, endoplasmic reticulum stress, mitochondrial processes, RNA interference, and endosomal transport to be shared between these parkinsonian disorders. Our overall analysis points toward more similarities in DNA methylation patterns between MSA and PD, both synucleinopathies, compared to that between MSA and PD with PSP, which is a tauopathy. Our results also highlight several shared DNA methylation changes and pathways indicative of converging molecular mechanisms in the white matter contributing toward neurodegeneration in all three parkinsonian disorders.</p></div>","PeriodicalId":7012,"journal":{"name":"Acta Neuropathologica","volume":"148 1","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-07-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11245434/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141589390","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}