Plant CommunicationsPub Date : 2025-02-10Epub Date: 2024-12-25DOI: 10.1016/j.xplc.2024.101232
Linhao Ge, Fuan Pan, Mingxuan Jia, Delphine M Pott, Hao He, Hongying Shan, Rosa Lozano-Durán, Aiming Wang, Xueping Zhou, Fangfang Li
{"title":"RNA modifications in plant biotic interactions.","authors":"Linhao Ge, Fuan Pan, Mingxuan Jia, Delphine M Pott, Hao He, Hongying Shan, Rosa Lozano-Durán, Aiming Wang, Xueping Zhou, Fangfang Li","doi":"10.1016/j.xplc.2024.101232","DOIUrl":"10.1016/j.xplc.2024.101232","url":null,"abstract":"<p><p>The chemical modifications of DNA and proteins are powerful mechanisms for regulating molecular and biological functions, influencing a wide array of signaling pathways in eukaryotes. Recent advancements in epitranscriptomics have shown that RNA modifications play crucial roles in diverse biological processes. Since their discovery in the 1970s, scientists have sought to decipher, identify, and elucidate the functions of these modifications across biological systems. Over the past decade, mounting evidence has demonstrated the importance of RNA modification pathways in plants, prompting significant efforts to decipher their physiological relevance. With the advent of high-resolution mapping techniques for RNA modifications and the gradual uncovering of their biological roles, our understanding of this additional layer of regulation is beginning to take shape. In this review, we summarize recent findings on the major RNA modifications identified in plants, with an emphasis on N6-methyladenosine (m<sup>6</sup>A), the most extensively studied modification. We discuss the functional significance of the effector components involved in m<sup>6</sup>A modification and its diverse roles in plant biotic interactions, including plant-virus, plant-bacterium, plant-fungus, and plant-insect relationships. Furthermore, we highlight new technological developments driving research progress in this field and outline key challenges that remain to be addressed.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101232"},"PeriodicalIF":9.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11897454/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142900305","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Plant CommunicationsPub Date : 2025-02-10Epub Date: 2024-12-24DOI: 10.1016/j.xplc.2024.101234
Shuaibing Yao, Bao Yang, Jianwu Li, Shan Tang, Shaohua Tang, Sang-Chul Kim, Xuemin Wang
{"title":"Phosphatidic acid signaling in modulating plant reproduction and architecture.","authors":"Shuaibing Yao, Bao Yang, Jianwu Li, Shan Tang, Shaohua Tang, Sang-Chul Kim, Xuemin Wang","doi":"10.1016/j.xplc.2024.101234","DOIUrl":"10.1016/j.xplc.2024.101234","url":null,"abstract":"<p><p>Phosphatidic acid (PA) is an important class of signaling lipids involved in various biological processes in plants. Functional characterization of mutants of PA-metabolizing enzymes, combined with lipidomics and protein-lipid interaction analyses, has revealed the key role of PA signaling in plant responses to biotic and abiotic stresses. Moreover, PA and its metabolizing enzymes influence several reproductive processes, including gametogenesis, pollen tube growth, self-incompatibility, haploid embryo formation, embryogenesis, and seed development. They also play a significant role in shaping plant reproductive and root architecture. Recent studies have shed light on the diverse mechanisms of PA's action, though much remains to be elucidated. Here, we summarize recent advances in the study of PA and its metabolizing enzymes, emphasizing their roles in plant sexual reproduction and architecture. We also explore potential mechanisms underlying PA's functions and discuss future research directions.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101234"},"PeriodicalIF":9.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11897466/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142900282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Plant CommunicationsPub Date : 2025-02-10Epub Date: 2024-12-28DOI: 10.1016/j.xplc.2024.101224
Seyed Mahdi Hosseiniyan Khatibi, Maria Arlene Adviento-Borbe, Niña Gracel Dimaano, Ando M Radanielson, Jauhar Ali
{"title":"Advanced technologies for reducing greenhouse gas emissions from rice fields: Is hybrid rice the game changer?","authors":"Seyed Mahdi Hosseiniyan Khatibi, Maria Arlene Adviento-Borbe, Niña Gracel Dimaano, Ando M Radanielson, Jauhar Ali","doi":"10.1016/j.xplc.2024.101224","DOIUrl":"10.1016/j.xplc.2024.101224","url":null,"abstract":"<p><p>Rice is a staple food for half of the world's population and the largest source of greenhouse gas (GHG) from the agricultural sector, responsible for approximately 48% of GHG emissions from croplands. With the rapid growth of the human population, the increasing pressure on rice systems for extensive and intensive farming is associated with an increase in GHG emissions that is impeding global efforts to mitigate climate change. The complex rice environment, with its genotypic variability among rice cultivars, as well as emerging farming practices and global climatic changes, are important challenges for research and development initiatives that aim to lower GHG emissions and increase crop productivity. A combination of approaches will likely be needed to effectively improve the resilience of modern rice farming. These will include a better understanding of the major drivers of emissions, different cropping practices to control the magnitude of emissions, and high yield performance through systems-level studies. The use of rice hybrids may give farmers an additive advantage, as hybrids may be better able to resist environmental stress than inbred varieties. Recent progress in the development and dissemination of hybrid rice has demonstrated a shift in the carbon footprint of rice production and is likely to lead the way in transforming rice systems to reduce GHG emissions. The application of innovative technologies such as high-throughput sequencing, gene editing, and AI can accelerate our understanding of the underlying mechanisms and critical drivers of GHG emissions from rice fields. We highlight advanced practical approaches to rice breeding and production that can support the increasing contribution of hybrid rice to global food and nutritional security while ensuring a sustainable and healthy planet.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":"6 2","pages":"101224"},"PeriodicalIF":9.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11897460/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143400582","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Plant CommunicationsPub Date : 2025-02-10Epub Date: 2024-11-13DOI: 10.1016/j.xplc.2024.101192
Wei Liu, Ji Li, Jing Sun, Chunyan Liu, Bin Yan, Can Zhou, Shengdong Li, Xianwei Song, Wei Yan, Yuanzhu Yang, Xiaofeng Cao
{"title":"The E3 ligase OsHel2 impedes readthrough of stalled mRNAs to regulate male fertility in thermosensitive genic male sterile rice.","authors":"Wei Liu, Ji Li, Jing Sun, Chunyan Liu, Bin Yan, Can Zhou, Shengdong Li, Xianwei Song, Wei Yan, Yuanzhu Yang, Xiaofeng Cao","doi":"10.1016/j.xplc.2024.101192","DOIUrl":"10.1016/j.xplc.2024.101192","url":null,"abstract":"<p><p>Heterosis is extensively used in the 2-line hybrid breeding system. Photosensitive/thermosensitive genic male sterile (P/TGMS) lines are key components of 2-line hybrid rice, and TGMS lines containing tms5 have significantly advanced 2-line hybrid rice breeding. We cloned the TMS5 gene and found that TMS5 is a tRNA cyclic phosphatase that can remove 2',3'-cyclic phosphate (cP) from cP-ΔCCA-tRNAs for efficient repair to ensure maintenance of mature tRNA levels. tms5 mutation causes increased levels of cP-ΔCCA-tRNAs and reduced levels of mature tRNAs, leading to male sterility at restrictive temperatures. However, the regulatory network of tms5-mediated TGMS remains to be clarified. Here, we demonstrate that the E3 ligase OsHel2 cooperates with TMS5 to regulate TGMS at restrictive temperatures. Consistently, both the accumulation of cP-ΔCCA-tRNAs and the reduction in mature tRNAs in the tms5 mutant are largely recovered in the tms5 oshel2-1 mutant. A lesion in OsHel2 results in partial readthrough of the stalled sequences, thereby enabling evasion of ribosome-associated protein quality control (RQC) surveillance. Our findings reveal a mechanism by which OsHel2 impedes readthrough of stalled mRNA sequences to regulate male fertility in TGMS rice, providing a paradigm for investigating how disorders in components of the RQC pathway impair cellular functions and lead to diseases or defects in other organisms.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101192"},"PeriodicalIF":9.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11897441/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142632419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Plant CommunicationsPub Date : 2025-02-10Epub Date: 2024-12-26DOI: 10.1016/j.xplc.2024.101235
Zhen-Fei Chao, Dai-Yin Chao
{"title":"Barriers and carriers for transition metal homeostasis in plants.","authors":"Zhen-Fei Chao, Dai-Yin Chao","doi":"10.1016/j.xplc.2024.101235","DOIUrl":"10.1016/j.xplc.2024.101235","url":null,"abstract":"<p><p>Transition metals are types of metals with high chemical activity. They play critical roles in plant growth, development, reproduction, and environmental adaptation, as well as in human health. However, the acquisition, transport, and storage of these metals pose specific challenges due to their high reactivity and poor solubility. In addition, distinct yet interconnected apoplastic and symplastic diffusion barriers impede their movement throughout plants. To overcome these obstacles, plants have evolved sophisticated carrier systems to facilitate metal transport, relying on the tight coordination of vesicles, enzymes, metallochaperones, low-molecular-weight metal ligands, and membrane transporters for metals, ligands, and metal-ligand complexes. This review highlights recent advances in the homeostasis of transition metals in plants, focusing on the barriers to transition metal transport and the carriers that facilitate their passage through these barriers.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101235"},"PeriodicalIF":9.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11897463/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142900281","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Plant CommunicationsPub Date : 2025-02-10Epub Date: 2024-12-18DOI: 10.1016/j.xplc.2024.101225
Jiaxuan Peng, Yidan Yu, Xiaofeng Fang
{"title":"Stress sensing and response through biomolecular condensates in plants.","authors":"Jiaxuan Peng, Yidan Yu, Xiaofeng Fang","doi":"10.1016/j.xplc.2024.101225","DOIUrl":"10.1016/j.xplc.2024.101225","url":null,"abstract":"<p><p>Plants have developed intricate mechanisms for rapid and efficient stress perception and adaptation in response to environmental stressors. Recent research highlights the emerging role of biomolecular condensates in modulating plant stress perception and response. These condensates function through numerous mechanisms to regulate cellular processes such as transcription, translation, RNA metabolism, and signaling pathways under stress conditions. In this review, we provide an overview of current knowledge on stress-responsive biomolecular condensates in plants, including well-defined condensates such as stress granules, processing bodies, and the nucleolus, as well as more recently discovered plant-specific condensates. By briefly referring to findings from yeast and animal studies, we discuss mechanisms by which plant condensates perceive stress signals and elicit cellular responses. Finally, we provide insights for future investigations on stress-responsive condensates in plants. Understanding how condensates act as stress sensors and regulators will pave the way for potential applications in improving plant resilience through targeted genetic or biotechnological interventions.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101225"},"PeriodicalIF":9.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11897469/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142865805","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Genetic engineering, including genome editing, for enhancing broad-spectrum disease resistance in crops.","authors":"Xinyu Han, Shumin Li, Qingdong Zeng, Peng Sun, Dousheng Wu, Jianguo Wu, Xiao Yu, Zhibing Lai, Ricky J Milne, Zhensheng Kang, Kabin Xie, Guotian Li","doi":"10.1016/j.xplc.2024.101195","DOIUrl":"10.1016/j.xplc.2024.101195","url":null,"abstract":"<p><p>Plant diseases, caused by a wide range of pathogens, severely reduce crop yield and quality, posing a significant threat to global food security. Developing broad-spectrum resistance (BSR) in crops is a key strategy for controlling crop diseases and ensuring sustainable crop production. Cloning disease-resistance (R) genes and understanding their underlying molecular mechanisms provide new genetic resources and strategies for crop breeding. Novel genetic engineering and genome editing tools have accelerated the study and engineering of BSR genes in crops, which is the primary focus of this review. We first summarize recent advances in understanding the plant immune system, followed by an examination of the molecular mechanisms underlying BSR in crops. Finally, we highlight diverse strategies employed to achieve BSR, including gene stacking to combine multiple R genes, multiplexed genome editing of susceptibility genes and promoter regions of executor R genes, editing cis-regulatory elements to fine-tune gene expression, RNA interference, saturation mutagenesis, and precise genomic insertions. The genetic studies and engineering of BSR are accelerating the breeding of disease-resistant cultivars, contributing to crop improvement and enhancing global food security.</p>","PeriodicalId":52373,"journal":{"name":"Plant Communications","volume":" ","pages":"101195"},"PeriodicalIF":9.4,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11897464/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142683347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}