Advances in Marine Biology最新文献

{"title":"Coral community life histories and population dynamics driven by seascape bathymetry and temperature variability.","authors":"Tim R McClanahan","doi":"10.1016/bs.amb.2020.08.003","DOIUrl":"https://doi.org/10.1016/bs.amb.2020.08.003","url":null,"abstract":"<p><p>Temperature variability, habitat, coral communities, and fishing intensity are important factors influencing coral responses to climate change. Consequently, chronic and acute sea-surface temperatures (SSTs) and their interactions with habitat and fishing were studied along the East African coast (~400km) by evaluating changes over a ~25-year period in two major reef habitats-island and fringing reefs. These habitats had similar mean and standard deviation temperature measurements but differed in that islands had lower ocean heights and flatter and less right-skewed temperature distributions than fringing reefs. These patterns arise because islands are exposed to deep offshore water passing through deep channels while being protected from the open ocean storms and the strong inter-annual current temperature variability. Within these two seascapes, coral communities are shaped by population responses to the variable temperature distributions as determined by the taxa's associations with the competitive-stress-ruderal (CSR) life history groups. For example, competitive taxa were more abundant where temperature distributions were flat and lacked frequent warm water anomalies. In contrast, ruderal, weedy, and generalist taxa were more common where temperature distributions were centralized, standard deviations high, and warm water anomalies more frequent. Finally, stress-resistant taxa were more common in reefs with high temperature skew but flatter temperature distributions. The rare 1998 thermal anomaly impacted and disturbed the ruderal and stressed reef more than the competitive communities. Ruderal became more similar to stressed communities while the stressed community moved further from the mean before recovering towards the competitive community. Competitive taxa were more common on islands and the deeper fringing reef sites while ruderal were dominant in shallow fringing reef lagoons. Over time, islands were less disturbed than fringing reefs and maintained the highest coral cover, numbers of taxa, and most competitive or space-occupying taxa. However, some island reefs with a history of dynamite fishing aligned with the stress-resistant communities over the full study period. Compared to the in situ SST gauges at the study site, temperature proxies with global coverage were often good at estimating mean and standard deviations of the SSTs but much poorer at estimating the shape of the temperature distributions that reflect chronic and acute stress, as reflected by kurtosis and skewness metrics. Given that these stress variables were critical for understanding the impacts of rare climate disturbances, global climate models that use mean conditions are likely to be poor predictors of future impacts on corals, particularly their species and life history composition. Better predictions should be possible if appropriate chronic and acute stress metrics and their proxies are identified and used.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.08.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38688357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Introduction to sharks in Mexico biology and conservation.","authors":"D Lowry,&nbsp;S E Larson","doi":"10.1016/S0065-2881(20)30015-8","DOIUrl":"https://doi.org/10.1016/S0065-2881(20)30015-8","url":null,"abstract":"","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/S0065-2881(20)30015-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37976245","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Shark movement patterns in the Mexican Pacific: A conservation and management perspective.","authors":"James T Ketchum,&nbsp;Mauricio Hoyos-Padilla,&nbsp;Alejandro Aldana-Moreno,&nbsp;Kathryn Ayres,&nbsp;Felipe Galván-Magaña,&nbsp;Alex Hearn,&nbsp;Frida Lara-Lizardi,&nbsp;Gador Muntaner-López,&nbsp;Miquel Grau,&nbsp;Abel Trejo-Ramírez,&nbsp;Darren A Whitehead,&nbsp;A Peter Klimley","doi":"10.1016/bs.amb.2020.03.002","DOIUrl":"https://doi.org/10.1016/bs.amb.2020.03.002","url":null,"abstract":"<p><p>Marine animal tracking has become one of the major tools used to understand the behavior and ecology of a multitude of species in the ocean, thus there is an increasing body of knowledge about this subject worldwide, particularly for sharks. Nevertheless, little was known of the movement patterns of shark in the Mexican Pacific (MXP) and Gulf of California (GOC), except for the pioneering work carried out in the 1980s on the movements of scalloped hammerhead sharks in El Bajo Espiritu Santo and other islands in the region, as well as ongoing studies on white shark movements, migratory patterns and behavior off Isla Guadalupe. Here we present an overview of previous studies on the movements of sharks, as well as a comprehensive description of new studies currently being carried out by our research group at Pelagios Kakunjá on several species of sharks in the MXP. We show how information gleaned from these studies can be put to use to guide sustainable exploitation policies and promote effective conservation practices.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.03.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"37976297","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The timing and causality of ecological shifts on Caribbean reefs.","authors":"William F Precht,&nbsp;Richard B Aronson,&nbsp;Toby A Gardner,&nbsp;Jennifer A Gill,&nbsp;Julie P Hawkins,&nbsp;Edwin A Hernández-Delgado,&nbsp;Walter C Jaap,&nbsp;Tim R McClanahan,&nbsp;Melanie D McField,&nbsp;Thaddeus J T Murdoch,&nbsp;Maggy M Nugues,&nbsp;Callum M Roberts,&nbsp;Christiane K Schelten,&nbsp;Andrew R Watkinson,&nbsp;Isabelle M Côté","doi":"10.1016/bs.amb.2020.08.008","DOIUrl":"https://doi.org/10.1016/bs.amb.2020.08.008","url":null,"abstract":"<p><p>Caribbean reefs have experienced unprecedented changes in the past four decades. Of great concern is the perceived widespread shift from coral to macroalgal dominance and the question of whether it represents a new, stable equilibrium for coral-reef communities. The primary causes of the shift-grazing pressure (top-down), nutrient loading (bottom-up) or direct coral mortality (side-in)-still remain somewhat controversial in the coral-reef literature. We have attempted to tease out the relative importance of each of these causes. Four insights emerge from our analysis of an early regional dataset of information on the benthic composition of Caribbean reefs spanning the years 1977-2001. First, although three-quarters of reef sites have experienced coral declines concomitant with macroalgal increases, fewer than 10% of the more than 200 sites studied were dominated by macroalgae in 2001, by even the most conservative definition of dominance. Using relative dominance as the threshold, a total of 49 coral-to-macroalgae shifts were detected. This total represents ~35% of all sites that were dominated by coral at the start of their monitoring periods. Four shifts (8.2%) occurred because of coral loss with no change in macroalgal cover, 15 (30.6%) occurred because of macroalgal gain without coral loss, and 30 (61.2%) occurred owing to concomitant coral decline and macroalgal increase. Second, the timing of shifts at the regional scale is most consistent with the side-in model of reef degradation, which invokes coral mortality as a precursor to macroalgal takeover, because more shifts occurred after regional coral-mortality events than expected by chance. Third, instantaneous observations taken at the start and end of the time-series for individual sites showed these reefs existed along a continuum of coral and macroalgal cover. The continuous, broadly negative relationship between coral and macroalgal cover suggests that in some cases coral-to-macroalgae phase shifts may be reversed by removing sources of perturbation or restoring critical components such as the herbivorous sea urchin Diadema antillarum to the system. The five instances in which macroalgal dominance was reversed corroborate the conclusion that macroalgal dominance is not a stable, alternative community state as has been commonly assumed. Fourth, the fact that the loss in regional coral cover and concomitant changes to the benthic community are related to punctuated, discrete events with known causes (i.e. coral disease and bleaching), lends credence to the hypothesis that coral reefs of the Caribbean have been under assault from climate-change-related maladies since the 1970s.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.08.008","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38688359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The population dynamics of the coral reef crisis-Prologue.","authors":"Bernhard M Riegl","doi":"10.1016/S0065-2881(20)30055-9","DOIUrl":"https://doi.org/10.1016/S0065-2881(20)30055-9","url":null,"abstract":"","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/S0065-2881(20)30055-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38700194","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Population fluctuations of the fungiid coral Cycloseris curvata, Galápagos Islands, Ecuador.","authors":"Joshua S Feingold,&nbsp;Brandon Brulé","doi":"10.1016/bs.amb.2020.08.005","DOIUrl":"https://doi.org/10.1016/bs.amb.2020.08.005","url":null,"abstract":"<p><p>Fungiid corals (Cnidaria: Anthozoa: Scleractinia) occur at isolated locations scattered throughout the eastern tropical Pacific. They can be reef-associated but are often found on sand and rubble substrata distant from reef coral habitat. Cycloseris curvata is known in this region from the southern Gulf of California, through Mexico, Costa Rica, and Panamá, and with the southern-most populations occurring in the Galápagos Islands, Ecuador. During Archipelago-wide surveys (1988-2019), living individuals of Cycloseris curvata were observed at only two locations, Devil's Crown (near Floreana Island) and Xarifa Island (near Española Island). The Devil's Crown population was observed from 1988 to 2017, whereas living individuals in the Xarifa population were observed from 2005 to 2009. In 2012 a death assemblage (dead skeletons) was discovered at Darwin Island, at the northern-most extent of the Archipelago. At Devil's Crown, visual surveys were performed annually or biennially from 1990 to 2012, with two more surveys in 2017 and 2019. The living Cycloseris curvata population consisted of 15 individuals in 1990 that gradually increased to 78 individuals by 1995. Over 200 individuals were observed in 1996, and high numbers persisted through 1998 with 335 individuals. Live tissue surface area per polyp ranged from 0.5 to 95.0cm². The population decreased to 112 individuals in 1999 (following warming associated with the 1997-98 El Niño), with further declines to 20 in 2009 (following cooling associated with the 2007 La Niña) and a rebound to 91 in 2012. After a 5y break in data collection, only one individual (28.3cm²) was observed in 2017, and in 2019 none were observed. Although undetected living Cycloseris curvata populations may exist, and renewed recruitment provides some hope for population reestablishment, it is possible that this fungiid coral species is now extirpated from the Galápagos Archipelago.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.08.005","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38351550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Biophysical model of coral population connectivity in the Arabian/Persian Gulf.","authors":"Geórgenes Cavalcante,&nbsp;Filipe Vieira,&nbsp;Jonas Mortensen,&nbsp;Radhouane Ben-Hamadou,&nbsp;Pedro Range,&nbsp;Elizabeth A Goergen,&nbsp;Edmo Campos,&nbsp;Bernhard M Riegl","doi":"10.1016/bs.amb.2020.07.001","DOIUrl":"https://doi.org/10.1016/bs.amb.2020.07.001","url":null,"abstract":"<p><p>The coral reef ecosystems of the Arabian/Persian Gulf (the Gulf) are facing profound pressure from climate change (extreme temperatures) and anthropogenic (land-use and population-related) stressors. Increasing degradation at local and regional scales has already resulted in widespread coral cover reduction. Connectivity, the transport and exchange of larvae among geographically separated populations, plays an essential role in recovery and maintenance of biodiversity and resilience of coral reef populations. Here, an oceanographic model in 3-D high-resolution was used to simulate particle dispersion of \"virtual larvae.\" We investigated the potential physical connectivity of coral reefs among different regions in the Gulf. Simulations reveal that basin-scale circulation is responsible for broader spatial dispersion of the larvae in the central region of the Gulf, and tidally-driven currents characterized the more localized connectivity pattern in regions along the shores in the Gulf's southern part. Results suggest predominant self-recruitment of reefs with highest source and sink ratios along the Bahrain and western Qatar coasts, followed by the south eastern Qatar and continental Abu Dhabi coast. The central sector of the Gulf is suggested as recruitment source in a stepping-stone dynamics. Recruitment intensity declined moving away from the Straits of Hormuz. Connectivity varied in models assuming passive versus active mode of larvae movement. This suggests that larval behaviour needs to be taken into consideration when establishing dispersion models, and establishing conservation strategies for these vulnerable ecosystems.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.07.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38351552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Larval connectivity and water quality explain spatial distribution of crown-of-thorns starfish outbreaks across the Great Barrier Reef.","authors":"S A Matthews,&nbsp;C Mellin,&nbsp;Morgan S Pratchett","doi":"10.1016/bs.amb.2020.08.007","DOIUrl":"https://doi.org/10.1016/bs.amb.2020.08.007","url":null,"abstract":"<p><p>Outbreaks of the coral eating crown-of-thorns starfish (COTS; Acanthasts cf. solaris) occur in cyclical waves along the Great Barrier Reef (GBR), contributing significantly to the decline in hard coral cover over the past 30 years. One main difficulty faced by scientists and managers alike, is understanding the relative importance of contributing factors to COTS outbreaks such as increased nutrients and water quality, larval connectivity, fishing pressure, and abiotic conditions. We analysed COTS abundances from the most recent outbreak (2010-2018) using both boosted regression trees and generalised additive models to identify key predictors of COTS outbreaks. We used this approach to predict the suitability of each reef on the GBR for COTS outbreaks at three different levels: (1) reefs with COTS present intermittently (Presence); (2) reefs with COTS widespread and present in most samples and (Prevalence) (3) reefs experiencing outbreak levels of COTS (Outbreak). We also compared the utility of two auto-covariates accounting for spatial autocorrelation among observations, built using weighted inverse distance and weighted larval connectivity to reefs supporting COTS populations, respectively. Boosted regression trees (BRT) and generalised additive mixed models (GAMM) were combined in an ensemble model to reduce the effect of model uncertainty on predictions of COTS presence, prevalence and outbreaks. Our results from best performing models indicate that temperature (Degree Heating Week exposure: relative importance=13.1%) and flood plume exposure (13.0%) are the best predictors of COTS presence, variability in chlorophyll concentration (12.6%) and flood plume exposure (8.2%) best predicted COTS prevalence and larval connectivity potential (22.7%) and minimum sea surface temperature (8.0%) are the best predictors of COTS outbreaks. Whether the reef was open or closed to fishing, however, had no significant effect on either COTS presence, prevalence or outbreaks in BRT results (<0.5%). We identified major hotspots of COTS activity primarily on the mid shelf central GBR and on the southern Swains reefs. This study provides the first empirical comparison of the major hypotheses of COTS outbreaks and the first validated predictions of COTS outbreak potential at the GBR scale incorporating connectivity, nutrients, biophysical and spatial variables, providing a useful aid to management of this pest species on the GBR.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.08.007","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38351554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Marine environmental DNA: Approaches, applications, and opportunities.","authors":"Jeff A Eble,&nbsp;Toby S Daly-Engel,&nbsp;Joseph D DiBattista,&nbsp;Adam Koziol,&nbsp;Michelle R Gaither","doi":"10.1016/bs.amb.2020.01.001","DOIUrl":"https://doi.org/10.1016/bs.amb.2020.01.001","url":null,"abstract":"<p><p>Environmental DNA (eDNA) is increasingly being used to document species distributions and habitat use in marine systems, with much of the recent effort focused on leveraging advances in next-generation DNA sequencing to assess and track biodiversity across taxonomic groups. Environmental DNA offers a number of important advantages over traditional survey techniques, including non-invasive sampling, sampling where traditional approaches are impractical or inefficient (e.g. deep oceans), reduced cost, and increased detection sensitivity. However, eDNA applications are currently limited because of an insufficient understanding of the influence of sample source, analytical approach, and marker type on eDNA detections. Because approaches vary considerably among eDNA studies, we present a summary of the current state of the field and emerging best practices. The impact of observed variation in rates of eDNA production, persistence, and transport are also discussed and future research needs are highlighted with the goal of expanding eDNA applications, including the development of statistical models to improve the predictability of eDNA detection and quantification.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.01.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38103725","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Contributors to Volume 88","authors":"","doi":"10.1016/s0074-7742(09)88018-5","DOIUrl":"https://doi.org/10.1016/s0074-7742(09)88018-5","url":null,"abstract":"","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/s0074-7742(09)88018-5","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"55813327","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}