Advances in Marine Biology最新文献

{"title":"Modification of Hexachlorobenzene to Molecules with Lower Long-Range Transport Potentials Using 3D-QSAR Models with a Full Factor Experimental Design.","authors":"Meijin Du,&nbsp;Wenwen Gu,&nbsp;Xixi Li,&nbsp;Fuqiang Fan,&nbsp;Yu Li","doi":"10.1016/bs.amb.2018.09.004","DOIUrl":"https://doi.org/10.1016/bs.amb.2018.09.004","url":null,"abstract":"<p><p>In this study, the hexachlorobenzene molecule was modified by three-dimensional quantitative structure-activity relationship (3D-QSAR) models and a full factor experimental design to obtain new hexachlorobenzene molecules with low migration ability. The 3D-QSAR models (comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA)) were constructed by SYBLY-X 2.0 software, using experimental data of octanol-air partition coefficients (K_OA) for 12 chlorobenzenes (CBs) congeners as the dependent variable, and the structural parameters of CBs as independent variables, respectively. A target molecule (hexachlorobenzene; HCB: its long-distance migration capability leads to pollution of the marine environment in Antarctic and Arctic) was modified using the 3D-QSAR contour maps associated with resolution V of the 2^10-3 full-factorial experimental design method, and 11 modified HCB molecules were produced with a single chlorine atom (-Cl₂) and three chlorine atoms (-Cl₁, -Cl₃, and -Cl₅) replaced with electropositive groups (-COOH, -CN, -CF₃, -COF, -NO₂, -F, -CHF₂, -ONO₂, and -SiF₃) to increase the logK_OA. The new molecules had essentially similar biological enrichment functions and toxicities as HCB but were found to be more easily degraded. A 2D-QSAR model and molecular docking technology indicated that both dipole moments and highest occupied orbital energies of the substituents markedly affected migration and degradation of the new molecules. The abilities of the compounds to undergo long distance migration were assessed. The modified HCB molecules (i.e. 2-CN-HCB, 2-CF₃-HCB, 1-F-3-COOH-5-NO₂-HCB, 1-NO₂-3-CN-5-CHF₂-HCB and 1-CN-3-F-5-NO₂-HCB) moved from a long-range transport potential of the modified molecules to a relatively low mobility class, and the transport potentials of the remaining modified HCB molecules (i.e. 2-COOH-HCB, 2-COF-HCB, 1-COF-3-ONO₂-5-NO2-HCB, 1-F-3-CN-5-SiF₃-HCB, 1-F-3-COOH-5-SiF₃-HCB and 1-CN-3-SiF₃-5-ONO₂-HCB) also significantly decreased. These results provide a basic theoretical basis for designing environmentally benign molecules based on HCB.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2018.09.004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36711885","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Mediterranean Bioconstructions Along the Italian Coast.","authors":"Gianmarco Ingrosso,&nbsp;Marco Abbiati,&nbsp;Fabio Badalamenti,&nbsp;Giorgio Bavestrello,&nbsp;Genuario Belmonte,&nbsp;Rita Cannas,&nbsp;Lisandro Benedetti-Cecchi,&nbsp;Marco Bertolino,&nbsp;Stanislao Bevilacqua,&nbsp;Carlo Nike Bianchi,&nbsp;Marzia Bo,&nbsp;Elisa Boscari,&nbsp;Frine Cardone,&nbsp;Riccardo Cattaneo-Vietti,&nbsp;Alessandro Cau,&nbsp;Carlo Cerrano,&nbsp;Renato Chemello,&nbsp;Giovanni Chimienti,&nbsp;Leonardo Congiu,&nbsp;Giuseppe Corriero,&nbsp;Federica Costantini,&nbsp;Francesco De Leo,&nbsp;Luigia Donnarumma,&nbsp;Annalisa Falace,&nbsp;Simonetta Fraschetti,&nbsp;Adriana Giangrande,&nbsp;Maria Flavia Gravina,&nbsp;Giuseppe Guarnieri,&nbsp;Francesco Mastrototaro,&nbsp;Marco Milazzo,&nbsp;Carla Morri,&nbsp;Luigi Musco,&nbsp;Laura Pezzolesi,&nbsp;Stefano Piraino,&nbsp;Fiorella Prada,&nbsp;Massimo Ponti,&nbsp;Fabio Rindi,&nbsp;Giovanni Fulvio Russo,&nbsp;Roberto Sandulli,&nbsp;Adriana Villamor,&nbsp;Lorenzo Zane,&nbsp;Ferdinando Boero","doi":"10.1016/bs.amb.2018.05.001","DOIUrl":"https://doi.org/10.1016/bs.amb.2018.05.001","url":null,"abstract":"<p><p>Marine bioconstructions are biodiversity-rich, three-dimensional biogenic structures, regulating key ecological functions of benthic ecosystems worldwide. Tropical coral reefs are outstanding for their beauty, diversity and complexity, but analogous types of bioconstructions are also present in temperate seas. The main bioconstructions in the Mediterranean Sea are represented by coralligenous formations, vermetid reefs, deep-sea cold-water corals, Lithophyllum byssoides trottoirs, coral banks formed by the shallow-water corals Cladocora caespitosa or Astroides calycularis, and sabellariid or serpulid worm reefs. Bioconstructions change the morphological and chemicophysical features of primary substrates and create new habitats for a large variety of organisms, playing pivotal roles in ecosystem functioning. In spite of their importance, Mediterranean bioconstructions have not received the same attention that tropical coral reefs have, and the knowledge of their biology, ecology and distribution is still fragmentary. All existing data about the spatial distribution of Italian bioconstructions have been collected, together with information about their growth patterns, dynamics and connectivity. The degradation of these habitats as a consequence of anthropogenic pressures (pollution, organic enrichment, fishery, coastal development, direct physical disturbance), climate change and the spread of invasive species was also investigated. The study of bioconstructions requires a holistic approach leading to a better understanding of their ecology and the application of more insightful management and conservation measures at basin scale, within ecologically coherent units based on connectivity: the cells of ecosystem functioning.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2018.05.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36314282","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Biology of Seamounts: 25 Years on.","authors":"Alex D Rogers","doi":"10.1016/bs.amb.2018.06.001","DOIUrl":"https://doi.org/10.1016/bs.amb.2018.06.001","url":null,"abstract":"<p><p>Seamounts are one of the major biomes of the global ocean. The last 25 years of research has seen considerable advances in the understanding of these ecosystems. The interactions between seamounts and steady and variable flows have now been characterised providing a better mechanistic understanding of processes influencing biology. Processes leading to upwelling, including Taylor column formation and tidal rectification, have now been defined as well as those leading to draw down of organic matter from the ocean surface to seamount summit and flanks. There is also an improved understanding of the interactions between seamounts, zooplankton and micronekton communities especially with respect to increased predation pressure in the vicinity of seamounts. Evidence has accumulated of the role of seamounts as hot spots for ocean predators including large pelagic fish, sharks, pinnipeds, cetaceans and seabirds. The complexity of benthic communities associated with seamounts is high and drivers of biodiversity are now being resolved. Claims of high endemism resulting from isolation of seamounts as islands of habitat and speciation have not been supported. However, for species characterised by low dispersal capability, such as some groups of benthic sessile or low-mobility invertebrates, low connectivity between seamount populations has been found with evidence of endemism at a local level. Threats to seamounts have increased in the last 25 years and include overfishing, destructive fishing, marine litter, direct and indirect impacts of climate change and potentially marine mining in the near future. Issues around these threats and their management are discussed.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2018-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2018.06.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"36314280","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"An Introduction to Modelling Abundance and Life History Parameters in Shark Populations.","authors":"Dovi Kacev,&nbsp;Timothy J Sippel,&nbsp;Michael J Kinney,&nbsp;Sebastián A Pardo,&nbsp;Christopher G Mull","doi":"10.1016/bs.amb.2017.08.001","DOIUrl":"https://doi.org/10.1016/bs.amb.2017.08.001","url":null,"abstract":"<p><p>Elasmobranchs play critically important ecological roles throughout the world's oceans, yet in many cases, their slow life histories and interactions with fisheries makes them particularly susceptible to exploitation. Management for these species requires robust scientific input, and mathematical models are the backbone of science-based management. In this chapter, we provide an introductory overview of the use of mathematical models to estimate shark abundance. First, we discuss life history models that are used to understand the basic biology of elasmobranchs. Second, we cover population dynamics models, which are used to make inferences regarding population trend, size, and risk of extinction. Finally, we provide examples of applied models used to assess the status of elasmobranchs in the Northeast Pacific Ocean to guide management for these species. This chapter is not a comprehensive review of quantitative methods, but rather introduces various mathematical tools in fisheries management, with a focus on shark management in the Northeast Pacific Ocean.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2017.08.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"35531364","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Shark Interactions With Directed and Incidental Fisheries in the Northeast Pacific Ocean: Historic and Current Encounters, and Challenges for Shark Conservation.","authors":"Jackie King,&nbsp;Gordon A McFarlane,&nbsp;Vladlena Gertseva,&nbsp;Jason Gasper,&nbsp;Sean Matson,&nbsp;Cindy A Tribuzio","doi":"10.1016/bs.amb.2017.09.003","DOIUrl":"https://doi.org/10.1016/bs.amb.2017.09.003","url":null,"abstract":"<p><p>For over 100 years, sharks have been encountered, as either directed catch or incidental catch, in commercial fisheries throughout the Northeast Pacific Ocean. A long-standing directed fishery for North Pacific Spiny Dogfish (Squalus suckleyi) has occurred and dominated shark landings and discards. Other fisheries, mainly for shark livers, have historically targeted species including Bluntnose Sixgill Shark (Hexanchus griseus) and Tope Shark (Galeorhinus galeus). While incidental catches of numerous species have occurred historically, only recently have these encounters been reliably enumerated in commercial and recreational fisheries. In this chapter we present shark catch statistics (directed and incidental) for commercial and recreational fisheries from Canadian waters (off British Columbia), southern US waters (off California, Oregon, and Washington), and northern US waters (off Alaska). In total, 17 species of sharks have collectively been encountered in these waters. Fishery encounters present conservation challenges for shark management, namely, the need for accurate catch statistics, stock delineation, life history parameter estimates, and improved assessments methods for population status and trends. Improvements in management and conservation of shark populations will only come with the further development of sound science-based fishery management practices for both targeted and incidental shark fisheries.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2017.09.003","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"35531366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Introduction to Northeast Pacific Shark Biology, Ecology, and Conservation.","authors":"Dayv Lowry,&nbsp;Shawn E Larson","doi":"10.1016/bs.amb.2017.06.004","DOIUrl":"https://doi.org/10.1016/bs.amb.2017.06.004","url":null,"abstract":"<p><p>Sharks are iconic, sometimes apex, predators found in every ocean and, as a result, they have featured prominently in the mythology, history, and fisheries of diverse human cultures around the world. Because of their regional significance to fisheries and ecological role as predators, and as a result of concern over long-term stability of their populations, there has been an increasing amount of work focused on shark conservation in recent decades. This volume highlights the biodiversity and biological attributes of, and conservation efforts targeted at, populations of sharks that reside in the Northeast Pacific Ocean bordering the west coast of the United States and Canada, one of the most economically and ecologically important oceanic regions in the world. A companion volume addresses details of fisheries and ecotourism in the same region, as well as delving into the relationship between captive husbandry of sharks and education/outreach efforts aimed at fostering a conservation mindset in the public at large. Together, these volumes provide readers a detailed backdrop against which to consider their own actions, and those of resource managers, academics, and educators, as they relate to the long-term conservation of sharks and their relatives.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2017.06.004","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"35334070","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Biological Conservation of Giant Limpets: The Implications of Large Size.","authors":"F. Espinosa, G. Rivera-Ingraham","doi":"10.1016/bs.amb.2016.10.002","DOIUrl":"https://doi.org/10.1016/bs.amb.2016.10.002","url":null,"abstract":"","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2016.10.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54047874","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Diet Composition and Trophic Ecology of Northeast Pacific Ocean Sharks.","authors":"Joseph J Bizzarro,&nbsp;Aaron B Carlisle,&nbsp;Wade D Smith,&nbsp;Enric Cortés","doi":"10.1016/bs.amb.2017.06.001","DOIUrl":"https://doi.org/10.1016/bs.amb.2017.06.001","url":null,"abstract":"<p><p>Although there is a general perception of sharks as large pelagic, apex predators, most sharks are smaller, meso- and upper-trophic level predators that are associated with the seafloor. Among 73 shark species documented in the eastern North Pacific (ENP), less than half reach maximum lengths >200cm, and 78% occur in demersal or benthic regions of the continental shelf or slope. Most small (≤200cm) species (e.g., houndsharks) and demersal, nearshore juveniles of larger species (e.g., requiem sharks) consume small teleosts and decapod crustaceans, whereas large species in pelagic coastal and oceanic environments feed on large teleosts and squids. Several large, pelagic apex predator species occur in the ENP, but the largest species (i.e., Basking Shark, Whale Shark) consume zooplankton or small nekton. Size-based dietary variability is substantial for many species, and segregation of juvenile and adult foraging habitats also is common (e.g., Horn Shark, Shortfin Mako). Temporal dietary differences are most pronounced for temperate, nearshore species with wide size ranges, and least pronounced for smaller species in extreme latitudes and deep-water regions. Sympatric sharks often occupy various trophic positions, with resource overlap differing by space and time and some sharks serving as prey to other species. Most coastal species remain in the same general region over time and feed opportunistically on variable prey inputs (e.g., season migrations, spawning, or recruitment events), whereas pelagic, oceanic species actively seek hot spots of prey abundance that are spatiotemporally variable. The influence of sharks on ecosystem structure and regulation has been downplayed compared to that of large teleosts species with higher per capita consumption rates (e.g., tunas, billfishes). However, sharks also exert indirect influences on prey populations by causing behavioural changes that may result in restricted ranges and reduced fitness. Except for food web modelling efforts in Alaskan waters, the trophic impacts of sharks are poorly incorporated into current ecosystem approaches to fisheries management in the NEP.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2017.06.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"35334071","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Conclusions: The Future of Shark Management and Conservation in the Northeast Pacific Ocean.","authors":"Dayv Lowry","doi":"10.1016/bs.amb.2017.09.002","DOIUrl":"https://doi.org/10.1016/bs.amb.2017.09.002","url":null,"abstract":"<p><p>Human interactions with sharks in the Northeast Pacific Ocean (NEP) have occurred for millennia but were largely limited to nearshore encounters as target and nontarget catch in fisheries. The arrival of Spanish explorers in the mid-1500s, followed by subsequent waves of explorers and colonizers from Europe and Russia, did little to change this relationship, until the mid-1800s. As technological advances conferred the ability to exploit marine fish further offshore and in deeper water, substantial fisheries developed and many of these encountered, and sometimes directly targeted, sharks. As these fisheries rose and fell with market demands and fluctuations in the abundance of target species, the collective consciousness of the nations fishing this region came to realize that adequate management plans with clear policy guidance rooted in conservation were crucial to sustaining both biodiversity and abundance of marine resources. With explicitly defined management regions governed by scientifically informed bodies that consider both societal and ecological needs, systems have been in place to manage and conserve marine species, including sharks, for over four decades now in the NEP. While policy evolution has largely limited directed fishing pressure as a threat for most shark species, bycatch is still a concern. Additionally, habitat degradation and destruction, ocean acidification, and global climate change are anticipated to fundamentally alter the ecosystems sharks are an integral part of in coming decades and centuries. Adequate conservation and management of sharks in the NEP, and around the world, moving into this period of uncertainty will rely upon comprehensive, integrated management of the ecosystem rooted in international coordination and cooperation. Far from being an unattainable goal, steps are being made each day to 'move the needle' in this direction-for the benefit of all.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2017.09.002","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"35628797","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Advances in Biochemical Indices of Zooplankton Production.","authors":"L. Yebra, T. Kobari, Akash R. Sastri, F. Gusmão, S. Hernández‐León","doi":"10.1016/bs.amb.2016.09.001","DOIUrl":"https://doi.org/10.1016/bs.amb.2016.09.001","url":null,"abstract":"","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2017-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2016.09.001","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"54047780","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}