海洋环境DNA:方法、应用和机遇。

3区 生物学 Q1 Agricultural and Biological Sciences
Advances in Marine Biology Pub Date : 2020-01-01 Epub Date: 2020-05-21 DOI:10.1016/bs.amb.2020.01.001
Jeff A Eble, Toby S Daly-Engel, Joseph D DiBattista, Adam Koziol, Michelle R Gaither
{"title":"海洋环境DNA:方法、应用和机遇。","authors":"Jeff A Eble,&nbsp;Toby S Daly-Engel,&nbsp;Joseph D DiBattista,&nbsp;Adam Koziol,&nbsp;Michelle R Gaither","doi":"10.1016/bs.amb.2020.01.001","DOIUrl":null,"url":null,"abstract":"<p><p>Environmental DNA (eDNA) is increasingly being used to document species distributions and habitat use in marine systems, with much of the recent effort focused on leveraging advances in next-generation DNA sequencing to assess and track biodiversity across taxonomic groups. Environmental DNA offers a number of important advantages over traditional survey techniques, including non-invasive sampling, sampling where traditional approaches are impractical or inefficient (e.g. deep oceans), reduced cost, and increased detection sensitivity. However, eDNA applications are currently limited because of an insufficient understanding of the influence of sample source, analytical approach, and marker type on eDNA detections. Because approaches vary considerably among eDNA studies, we present a summary of the current state of the field and emerging best practices. The impact of observed variation in rates of eDNA production, persistence, and transport are also discussed and future research needs are highlighted with the goal of expanding eDNA applications, including the development of statistical models to improve the predictability of eDNA detection and quantification.</p>","PeriodicalId":50950,"journal":{"name":"Advances in Marine Biology","volume":null,"pages":null},"PeriodicalIF":0.0000,"publicationDate":"2020-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/bs.amb.2020.01.001","citationCount":"21","resultStr":"{\"title\":\"Marine environmental DNA: Approaches, applications, and opportunities.\",\"authors\":\"Jeff A Eble,&nbsp;Toby S Daly-Engel,&nbsp;Joseph D DiBattista,&nbsp;Adam Koziol,&nbsp;Michelle R Gaither\",\"doi\":\"10.1016/bs.amb.2020.01.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Environmental DNA (eDNA) is increasingly being used to document species distributions and habitat use in marine systems, with much of the recent effort focused on leveraging advances in next-generation DNA sequencing to assess and track biodiversity across taxonomic groups. Environmental DNA offers a number of important advantages over traditional survey techniques, including non-invasive sampling, sampling where traditional approaches are impractical or inefficient (e.g. deep oceans), reduced cost, and increased detection sensitivity. However, eDNA applications are currently limited because of an insufficient understanding of the influence of sample source, analytical approach, and marker type on eDNA detections. Because approaches vary considerably among eDNA studies, we present a summary of the current state of the field and emerging best practices. The impact of observed variation in rates of eDNA production, persistence, and transport are also discussed and future research needs are highlighted with the goal of expanding eDNA applications, including the development of statistical models to improve the predictability of eDNA detection and quantification.</p>\",\"PeriodicalId\":50950,\"journal\":{\"name\":\"Advances in Marine Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://sci-hub-pdf.com/10.1016/bs.amb.2020.01.001\",\"citationCount\":\"21\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advances in Marine Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1016/bs.amb.2020.01.001\",\"RegionNum\":3,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2020/5/21 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"Agricultural and Biological Sciences\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances in Marine Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1016/bs.amb.2020.01.001","RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2020/5/21 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"Agricultural and Biological Sciences","Score":null,"Total":0}
引用次数: 21

摘要

环境DNA (Environmental DNA, eDNA)越来越多地被用于记录海洋系统中的物种分布和栖息地利用,最近的大部分工作都集中在利用下一代DNA测序的进展来评估和跟踪不同分类群体的生物多样性。与传统的调查技术相比,环境DNA提供了许多重要的优势,包括非侵入性采样、传统方法不切实际或效率低下的采样(例如深海)、降低成本和提高检测灵敏度。然而,由于对样品来源、分析方法和标记物类型对eDNA检测的影响了解不足,目前eDNA的应用受到限制。由于eDNA研究的方法差异很大,我们对该领域的现状和新兴的最佳实践进行了总结。研究人员还讨论了eDNA产生、持续和运输速率变化的影响,并强调了未来的研究需求,目标是扩大eDNA的应用,包括开发统计模型以提高eDNA检测和量化的可预测性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Marine environmental DNA: Approaches, applications, and opportunities.

Environmental DNA (eDNA) is increasingly being used to document species distributions and habitat use in marine systems, with much of the recent effort focused on leveraging advances in next-generation DNA sequencing to assess and track biodiversity across taxonomic groups. Environmental DNA offers a number of important advantages over traditional survey techniques, including non-invasive sampling, sampling where traditional approaches are impractical or inefficient (e.g. deep oceans), reduced cost, and increased detection sensitivity. However, eDNA applications are currently limited because of an insufficient understanding of the influence of sample source, analytical approach, and marker type on eDNA detections. Because approaches vary considerably among eDNA studies, we present a summary of the current state of the field and emerging best practices. The impact of observed variation in rates of eDNA production, persistence, and transport are also discussed and future research needs are highlighted with the goal of expanding eDNA applications, including the development of statistical models to improve the predictability of eDNA detection and quantification.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Advances in Marine Biology
Advances in Marine Biology MARINE & FRESHWATER BIOLOGY-
CiteScore
6.10
自引率
0.00%
发文量
6
审稿时长
12 months
期刊介绍: Advances in Marine Biology was first published in 1963 under the founding editorship of Sir Frederick S. Russell, FRS. Now edited by Charles Sheppard, the serial publishes in-depth and up-to-date reviews on a wide range of topics which will appeal to postgraduates and researchers in marine biology, fisheries science, ecology, zoology and biological oceanography. Eclectic volumes in the series are supplemented by thematic volumes on such topics as The Biology of Calanoid Copepods.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信