Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology最新文献

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Purification and characterization of cellulase produced by Bacillus sp. HMM. 芽孢杆菌产纤维素酶的纯化及特性研究。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-27 DOI: 10.1007/s10482-025-02112-w
Lanqian Huang, Lei Mo, Jiaming Jiang, Yu Huo, Shisong Yu, Jianmei Ou, Siyu Liu, Xinyu Xie, Guyu Yan, Chuzun Liao, Shangxin Wu, Huiqing Zhang, Shiru Huang, Qing Wang, Changhua Shang
{"title":"Purification and characterization of cellulase produced by Bacillus sp. HMM.","authors":"Lanqian Huang, Lei Mo, Jiaming Jiang, Yu Huo, Shisong Yu, Jianmei Ou, Siyu Liu, Xinyu Xie, Guyu Yan, Chuzun Liao, Shangxin Wu, Huiqing Zhang, Shiru Huang, Qing Wang, Changhua Shang","doi":"10.1007/s10482-025-02112-w","DOIUrl":"https://doi.org/10.1007/s10482-025-02112-w","url":null,"abstract":"<p><p>Cellulose is long-chain glucose polymer, which is linked by β-1,4-glycosidic bond. Its degradation relies on the synergistic action of multi-component cellulase system, including endoglucanase, exoglucanase and β-glucosidase. Cellulase hydrolyzes cellulose to produce glucose through the sequential reactions. While the biodegradation of lignocellulosic wastes has been extensively studied, researches on cellulase production with the mixed agricultural wastes as carbon sources remain limited. To address this gap, this study innovatively employed wheat bran (WB), sugarcane bagasse (SB) and rice hull (RH) to prepare the mixed carbon sources for cellulase production by Bacillus sp. HMM. Bacillus sp. HMM in culture medium with WB showed the highest cellulase activity (3.93 ± 0.13 U/mL) and reducing sugar content (0.97 ± 0.02 mg/mL) at 12 h. Cellulase was purified by (NH<sub>4</sub>)<sub>2</sub>SO<sub>4</sub> and DEAE-52 column, and investigated by SDS-PAGE. Mw of purified cellulase was between 50 and 70 kDa with purification fold of 23.10. This cellulase had endoglucanase, exoglucanase and β-glucosidase activities, and the wide substrate specificity, which was conducive to the complete degradation of lignocellulose. CMCase activities showed the high resistance under stress conditions such as metal ions, surfactants and inhibitors. CMCase activities still retained over 90% under the treatment of most additives for 4 h, especially DTT greatly promoted CMCase activity, reaching 129.2% of control. Bacillus sp. HMM could efficiently utilize wheat bran to produce cellulase for the conversion of lignocellulosic biomass.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 8","pages":"97"},"PeriodicalIF":1.8,"publicationDate":"2025-06-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144512728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Vibrio iocasae sp. nov., a bacterium isolated from the gill homogenate of bivalve lucinids Indoaustriella scarlatoi in intertidal mangrove sediments. 从潮间带红树林沉积物中双壳lucinids Indoaustriella scarlatoi的鳃匀浆中分离出的一种细菌。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-25 DOI: 10.1007/s10482-025-02110-y
Jia Luo, Huan Zhang, Ziyun Ye, Fei Li, Zhaoshan Zhong, Jiacheng Wang, Minxiao Wang, Chaolun Li
{"title":"Vibrio iocasae sp. nov., a bacterium isolated from the gill homogenate of bivalve lucinids Indoaustriella scarlatoi in intertidal mangrove sediments.","authors":"Jia Luo, Huan Zhang, Ziyun Ye, Fei Li, Zhaoshan Zhong, Jiacheng Wang, Minxiao Wang, Chaolun Li","doi":"10.1007/s10482-025-02110-y","DOIUrl":"https://doi.org/10.1007/s10482-025-02110-y","url":null,"abstract":"<p><p>A novel Vibrio strain, HN007<sup>T</sup>, was isolated from the gill homogenate of the bivalve lucinid Indoaustriella scarlatoi in intertidal mangrove sediments in Huiwen town, Hainan province, PR China. Cells of strain HN007<sup>T</sup> were Gram-stain-negative, facultatively anaerobic, motile, rod-shaped, and positive for oxidase and catalase activities. Growth occurred at 16-39 °C, at pH 6.0-11.0 and with 0-7% (w/v) NaCl. Molecular phylogenetic analysis based on 16S rRNA gene sequences affiliated the strain to the members of the genus Vibrio, with the closest species being Vibrio hannami 168GH5-2-16<sup>T</sup> (96.9% similarity), Vibrio variabilis R-40492<sup>T</sup> (96.1%), Vibrio aestivus M22<sup>T</sup> (95.8%), Vibrio maritimus R-40493<sup>T</sup> (95.4%), Vibrio mexicanus CAIM 1540<sup>T</sup> (95.4%), and Vibrio profundi TP187<sup>T</sup> (95.3%). The genome size of strain HN007<sup>T</sup> was 5,834,927 bp, with a DNA G + C content of 43.5%. The average nucleotide identity, digital DNA-DNA hybridisation, and average amino acid identity values between strain HN007<sup>T</sup> and the most related strains, were all below the thresholds typically used to define genomic species. Further genomic analysis clustered strain HN007<sup>T</sup> with the reference strain V. hannami LMG 30079<sup>T</sup> within the Albus clade. The major cellular fatty acids of strain HN007<sup>T</sup> were summed feature 3 (C<sub>16:1</sub>ω6c and/or C<sub>16:1</sub>ω7c, 40.9%) and summed feature 8 (C<sub>18:1</sub> ω7c and/or C<sub>18:1</sub> ω6c, 29.4%). The predominant polar lipid was phosphatidylethanolamine, while ubiquinone-8 was the predominant quinone. Based on genomic, chemotaxonomic, and physiological analysis, strain HN007<sup>T</sup> represents a novel species within the genus Vibrio, proposed to be named Vibrio iocasae sp. nov. The type strain is HN007<sup>T</sup> (= MCCC 1K08504<sup>T</sup> = KCTC 92899<sup>T</sup> = JCM 35938<sup>T</sup>).</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 8","pages":"96"},"PeriodicalIF":1.8,"publicationDate":"2025-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144486823","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sustainable forest soil management for remediation of heavy metals contamination: integrating technologies and ecosystem health. 重金属污染修复的可持续森林土壤管理:综合技术与生态系统健康。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-24 DOI: 10.1007/s10482-025-02111-x
Abiodun Yusuff Moshood, Mukhtar Iderawumi Abdulraheem, Linze Li, Yanyan Zhang, Wei Zhang, Kuan Gen, Yiheng Zang, Vijaya Raghavan, Jiandong Hu
{"title":"Sustainable forest soil management for remediation of heavy metals contamination: integrating technologies and ecosystem health.","authors":"Abiodun Yusuff Moshood, Mukhtar Iderawumi Abdulraheem, Linze Li, Yanyan Zhang, Wei Zhang, Kuan Gen, Yiheng Zang, Vijaya Raghavan, Jiandong Hu","doi":"10.1007/s10482-025-02111-x","DOIUrl":"10.1007/s10482-025-02111-x","url":null,"abstract":"<p><p>Due to its persistence and non-biodegradability, heavy metal pollution in forest soils poses an ecological disaster and a severe environmental concern, necessitating sustainable mitigation solutions. Forest soils exhibit physicochemical and biological properties, such as high organic matter content, abundant clay minerals, and diverse microbial interactions, which facilitate key processes such as adsorption, precipitation, and microbial-mediated immobilization of heavy metals. These attributes collectively enhance their capacity for sustainable remediation. Despite extensive research efforts in environmental remediation, there remains a gap in synthesizing the diverse approaches and technologies used for addressing forest soil contamination by heavy metals. Hence, this review aims to bridge this gap by consolidating existing knowledge and highlighting areas that require further investigation by providing an overview of research progress, prospects, and trends in soil remediation of heavy metal contamination. We discuss various remediation methods (e.g., phytoremediation, microbial interactions, and soil amendments), evaluating their effectiveness in reducing heavy metal concentrations and their impact on ecosystem health. A detailed analysis of these methods is presented, including their limitations, applicability, and the need to consider site-specific factors, cost-effectiveness, sustainability, and long-term efficacy. Additionally, we stress the importance of continuous innovation and collaboration among researchers, policymakers, and industry stakeholders to develop multidisciplinary, technology-driven solutions for restoring contaminated soils and safeguarding human and ecosystem health. By integrating multidisciplinary approaches and leveraging emerging technologies, sustainable solutions can be developed to restore contaminated soils and protect human health and ecosystems. Future research should focus on exploring the long-term impacts of forest soil management practices on heavy metal bioavailability and mobility, as well as optimizing existing techniques, exploring novel approaches, assessing ecosystem responses, and integrating forest soil management into broader environmental restoration strategies.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"95"},"PeriodicalIF":1.8,"publicationDate":"2025-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144477739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genomic analysis of Massilia antarctica subsp. insulae subsp. nov., a violacein- and aminochelin-producing bacterium isolated from Horseshoe Island, Antarctica. 南极麻蝇亚种的基因组分析。insulae无性系种群。2011年11月,从南极洲马蹄岛分离出的一种产紫色素和氨基chelin的细菌。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-23 DOI: 10.1007/s10482-025-02107-7
Sibel Melisa Sahin, Izzet Burcin Saticioglu, Muhammed Duman, Sabriye Sel, Hilal Ay
{"title":"Genomic analysis of Massilia antarctica subsp. insulae subsp. nov., a violacein- and aminochelin-producing bacterium isolated from Horseshoe Island, Antarctica.","authors":"Sibel Melisa Sahin, Izzet Burcin Saticioglu, Muhammed Duman, Sabriye Sel, Hilal Ay","doi":"10.1007/s10482-025-02107-7","DOIUrl":"https://doi.org/10.1007/s10482-025-02107-7","url":null,"abstract":"<p><p>Microorganisms isolated from polar regions are recognized for their considerable capability to encode unique proteins and metabolic pathways with importance for biotechnological applications. Specifically, microorganisms capable of generating pigments possessing antioxidant and antimicrobial properties as a strategy for survival amidst challenges like high ultraviolet radiation, low temperature, oxidative stress and microbial competition are noteworthy. In this research, we discovered a new subspecies of the species Massilia antarctica, designated as H27-R4<sup>T</sup>, which was isolated from a soil sample collected at Horseshoe Island in Antarctica. Strain H27-R4<sup>T</sup> is a purple-pigmented, rod-shaped, Gram-negative, and aerobic bacterium. Pairwise comparison of the 16S rRNA genes showed that the strain shares 100% identity with the type strain of Massilia antarctica P8398<sup>T</sup> and Massilia frigida CCM 8695<sup> T</sup>, while the highest average nucleotide identity (ANI) and digital DNA-DNA hybridization (dDDH) values of 97.1% and 73.7%, respectively, were observed between strain H27-R4<sup>T</sup> and M. antarctica P8398<sup>T</sup>. The whole-genome analysis revealed a metabolic potential in terms of secondary metabolism, resistance to antimicrobials and heavy metals, adaptation to cold environments, stress response mechanisms and metabolism of aromatic compounds. In addition, the strain exhibited pathways for violacein and aminochelin biosynthesis. Phylogenomic analyses confirmed that strain H27-R4<sup>T</sup> represents a novel subspecies for which the name Massilia antarctica subsp. insulae subsp. nov. is proposed.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"94"},"PeriodicalIF":1.8,"publicationDate":"2025-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144477738","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Biological interactions and soil properties shape bacterial and fungal communities during restoration of Pinus thunbergii shelter in saline soils. 盐渍土中松防护林恢复过程中生物相互作用和土壤特性影响细菌和真菌群落。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-21 DOI: 10.1007/s10482-025-02108-6
Zhugui Wen, Xinyu Liu, Wei Zhou, Xinke Liu, Zhaohan Fan, Yuxuan Wang, Boping Tang, Baoming Ge
{"title":"Biological interactions and soil properties shape bacterial and fungal communities during restoration of Pinus thunbergii shelter in saline soils.","authors":"Zhugui Wen, Xinyu Liu, Wei Zhou, Xinke Liu, Zhaohan Fan, Yuxuan Wang, Boping Tang, Baoming Ge","doi":"10.1007/s10482-025-02108-6","DOIUrl":"10.1007/s10482-025-02108-6","url":null,"abstract":"<p><p>As a practical management approach to combat global warming, reforestation may affect microbial communities. However, the effects of Pinus thunbergii forest restoration on microbial colonisation and community structures in saline areas are poorly documented. Herein, microbial communities were investigated in two different pine stand age forests, in addition to bare sites, through Illumina MiSeq high-throughput sequencing technology based on bacterial 16S rRNA and fungal ITS rRNA, and predicted using the PICRUSt2 and FUNGuild databases. The restoration of P. thunbergii shelter in saline areas caused significant changes in soil properties and microbial community characteristics. NMDS analysis exhibited significant differences in fungal and bacterial composition, as confirmed by the Adonis test (p = 0.04 and p < 0.01). Microbial communities were significantly affected by soil properties, with fungal and bacterial diversity being positively affected by soil's rapidly available-K (R<sup>2</sup> = 0.15 and 0.22) and hydrolysable-N (R<sup>2</sup> = 0.16 and 0.11). Of all guilds, endophytes and mycorrhizal fungi had a marked effect on specific bacterial compositions. The topologies of microbial networks showed that microbial network complexity was lower in low-growth forests, while stable below-ground microbial community structures could form under long-term P. thunbergii vegetation. During the restoration process, soil fungi were less susceptible to the vegetation successional stage, while soil bacteria were more sensitive. Over time, the diversity of bacteria and fungi was mainly driven by soil characteristics as well as the restoration of P. thunbergii. Further, forest restoration and mycorrhizal fungi could shape specific bacterial community compositions in saline soils.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"93"},"PeriodicalIF":1.8,"publicationDate":"2025-06-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144340602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In-vitro assessment of probiotic potential of bacteria isolated from chicken gastrointestinal tract. 鸡胃肠道分离菌益生菌潜力的体外评价。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-20 DOI: 10.1007/s10482-025-02104-w
Fatima Shahbaz, Fatima Muccee, Afreen Fatima Mirza, Muhammad Abdullah Tanveer, Amal H I Al Haddad, Nadia Hussain
{"title":"In-vitro assessment of probiotic potential of bacteria isolated from chicken gastrointestinal tract.","authors":"Fatima Shahbaz, Fatima Muccee, Afreen Fatima Mirza, Muhammad Abdullah Tanveer, Amal H I Al Haddad, Nadia Hussain","doi":"10.1007/s10482-025-02104-w","DOIUrl":"10.1007/s10482-025-02104-w","url":null,"abstract":"<p><p>Broilers farming has been suffering from multiple challenges, including extensive application of antibiotics. Probiotics-supplemented feed might serve as an efficient alternative to these growth stimulants. We designed the present study to isolate bacteria from chickens' gut and analyze their probiotic characteristics. For isolation, the serial dilution method and De Man-Rogosa-Sharpe agar (MRS) medium were used. Isolates were characterized via biochemical and ribotyping analysis, growth study, antimicrobial and antibiotic sensitivity profiling, acid and bile salt tolerance, intestinal adhesion and cholesterol degradation assays. Four isolates were identified as Enterococcus durans strain PUPro5, Lactobacillus acidophilus strain PUPro6, Enterococcus durans strain PUPro7 and Ligilactobacillus salivarius strain PUPro8. The highest growth rate was observed in E. durans strain PUPro7 with OD<sub>600</sub> = 1.929 ± 0.001 and start of log phase after 3 h. All isolates showed maximum intestinal cell adhesion at 90 min, ranging between 423 and 588.67 CFUs/ml. All isolates demonstrated maximum tolerance potential at 2% concentration of NaCl with L. salivarius strain PUPro8 being the most efficient among all isolates. The highest resistance to bile salts was observed in L. acidophilus strain PUPro6 with an optimum OD<sub>600</sub> of 1.748 at log phase. All bacteria demonstrated antimicrobial resistance against Staphylococcus aureus, Pseudomonas aeruginosa, Bacillus subtilis and B. proteus. Maximum tolerance was observed in L. acidophilus strain PUPro6 (OD<sub>600</sub> = 1.344 ± 0.017) against P. aeruginosa, L. salivarius strain PUPro8 (OD<sub>600</sub> = 1.304 ± 0.003) against B. subtilis, E. durans strain PUPro5 (OD<sub>600</sub> = 1.294 ± 0.066) against S. aureus and E. durans strain PUPro7 (OD<sub>600</sub> = 1.216 ± 0.002) against B. proteus. All isolates were sensitive against all the antibiotics, with maximum zone of inhibition against velosef and cefadroxil in the E. durans strain PUPro5. Cholesterol degradation efficiency of isolates ranged between 195.2 and 204.6 mg/dl. Bacteria characterized in the present study exhibit probiotic potential and can be recommended for testing their effect on chickens' growth and meat quality through broiler diet supplementation.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"92"},"PeriodicalIF":1.8,"publicationDate":"2025-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144334385","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Siderophores produced by marine microorganisms. 由海洋微生物产生的铁载体。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-16 DOI: 10.1007/s10482-025-02098-5
Lei Chen, Zhuo-Yue Li, Guang-Yu Wang
{"title":"Siderophores produced by marine microorganisms.","authors":"Lei Chen, Zhuo-Yue Li, Guang-Yu Wang","doi":"10.1007/s10482-025-02098-5","DOIUrl":"https://doi.org/10.1007/s10482-025-02098-5","url":null,"abstract":"<p><p>Siderophores are iron-chelating, low-molecular-weight compounds secreted by microorganisms in iron-deficient environments that enhance iron uptake. When compared to the siderophores produced by terrestrial microorganisms, marine siderophores have been shown to have diverse structures and physiological functions. Fifty-seven strains of marine microorganisms have been identified as siderophore producers so far. Among them, 54 bacterial strains belong to 23 genera of 19 families in five phyla, and three fungal strains belong to three genera of three families in two phyla. The most common source of siderophores is seawater, which has a wide depth distribution. A total of 105 siderophores from marine microorganisms had been reported by 2024. These siderophores are mainly divided into five types depending on their functional groups and hydrophobicity: hydroxamates, catecholates, carboxylates, mixed, and other types. The most common marine siderophore is hydroxamate. The amphiphilicity of marine microbial siderophores distinguishes them from those produced by terrestrial microorganisms. This review discusses the recent findings in marine siderophore biology and highlights the potential of siderophores in medicine, fish disease control, bioremediation, and biosensors.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"91"},"PeriodicalIF":1.8,"publicationDate":"2025-06-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144310775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrons: the hidden architects of bacterial adaptation, evolution, and the challenges of antimicrobial resistance. 整合子:细菌适应、进化和抗菌素耐药性挑战的隐藏建筑师。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-12 DOI: 10.1007/s10482-025-02103-x
Harjeet Singh, Shivani Pandya, Srushti Jasani, Mitesh Patel, Tanvir Kaur, Sarvesh Rustagi, Sheikh Shreaz, Ajar Nath Yadav
{"title":"Integrons: the hidden architects of bacterial adaptation, evolution, and the challenges of antimicrobial resistance.","authors":"Harjeet Singh, Shivani Pandya, Srushti Jasani, Mitesh Patel, Tanvir Kaur, Sarvesh Rustagi, Sheikh Shreaz, Ajar Nath Yadav","doi":"10.1007/s10482-025-02103-x","DOIUrl":"https://doi.org/10.1007/s10482-025-02103-x","url":null,"abstract":"<p><p>Integrons, a diverse group of genetic elements, have emerged as key players in bacterial adaptation and evolution. These elements, commonly found in both environmental as well as clinical settings, facilitate the acquisition, exchange, and expression of integron cassettes, allowing bacteria to rapidly adapt to changing environments and acquire antibiotic resistance. This review provides an in-depth exploration of the various classes of clinical integrons, including class 1, 2, and 3, highlighting their origins, distribution, and associated mobile elements. We delve into the astonishing success of \"class 1 integrons\", emphasizing their ability to recognize diverse attachment sites known as \"attC sites\" and getting integrated within many different integron cassettes from diverse sources. Class 1 integrons are able to propagate widely among bacterial hosts due to their lack of host specificity, interaction with transposons, and broad host range plasmids. Moreover, we discuss the substantial impact of class 1 integrons in antimicrobial resistance, as they accumulate an array of resistance genes through strong positive selection. Additionally, we address the challenging issue regarding the evolution and function of integrons and integron cassettes, including the role of promoters, origins of integron cassettes, and the abundance of unknown proteins encoded within them. The future prospects of integron research are also explored, highlighting the need to understand cassette expression patterns, assess the contribution of chromosomal/superintegron arrays to host fitness, unravel the mechanisms of cassette generation, and investigate the connection between the SOS induction and horizontal gene transfer. Overall, this review underlines the significance of integrons as hidden architects driving bacterial adaptation and evolution, providing valuable insights into their ecological and evolutionary dynamics, and shaping the future direction of research in this field.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"90"},"PeriodicalIF":1.8,"publicationDate":"2025-06-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144286952","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of microbiota in fish spoilage: biochemical mechanisms and innovative preservation strategies. 微生物群在鱼类腐败中的作用:生化机制和创新保存策略。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-08 DOI: 10.1007/s10482-025-02101-z
Yongzhou Chi, Meilin Luo, Chengcheng Ding
{"title":"The role of microbiota in fish spoilage: biochemical mechanisms and innovative preservation strategies.","authors":"Yongzhou Chi, Meilin Luo, Chengcheng Ding","doi":"10.1007/s10482-025-02101-z","DOIUrl":"https://doi.org/10.1007/s10482-025-02101-z","url":null,"abstract":"<p><p>Fish spoilage is a microbially-mediated biochemical process resulting in quality deterioration, economic losses, and food safety risks. Studies have indicated that spoilage microbiota are phylogenetically diverse, with Gram-negative bacteria (Pseudomonas, Shewanella, Photobacterium) representing primary spoilage organisms, and Gram-positive bacteria (Lactobacillus, Brochothrix) causing spoilage only under specific conditions. Microorganisms cause spoilage through the utilization of three main metabolic processes: (i) proteolytic degradation of muscle proteins, (ii) lipolytic breakdown of triglycerides, and (iii) production of volatile bioactive organic compounds and biogenic amines. By combining high-throughput sequencing with metabolomics, researchers have been uncovering strain-specific metabolic networks and how they are influenced by environmental factors such as temperature, pH, and packaging. This review systematically examines: (1) patterns of taxonomic succession in spoilage microbiota, (2) enzymatic and biochemical pathways involved in spoilage, and (3) innovative preservation strategies targeting spoilage consortia. Emerging technologies, such as bacteriocin-mediated biopreservation, phage therapy, and modified atmosphere packaging, show considerable promise in inhibiting spoilage organisms while maintaining the sensory qualities of the fish. Microbiome-directed interventions combined with predictive modeling and precision storage systems also represent a novel approach to fish preservation. There is a critical need to integrate traditional microbiology with the use of multi-omic technologies for the development of sustainable, microbiota-based preservation strategies that address global seafood security challenges.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"89"},"PeriodicalIF":1.8,"publicationDate":"2025-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144250594","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of endophytic bacteria in enhancing plant growth and health for sustainable agriculture. 内生细菌在促进植物生长和可持续农业健康中的作用。
IF 1.8 3区 生物学
Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology Pub Date : 2025-06-08 DOI: 10.1007/s10482-025-02100-0
Tairine Graziella Ercole, Daniela Romani Bonotto, Mariangela Hungria, Vanessa Merlo Kava, Lygia Vitoria Galli
{"title":"The role of endophytic bacteria in enhancing plant growth and health for sustainable agriculture.","authors":"Tairine Graziella Ercole, Daniela Romani Bonotto, Mariangela Hungria, Vanessa Merlo Kava, Lygia Vitoria Galli","doi":"10.1007/s10482-025-02100-0","DOIUrl":"https://doi.org/10.1007/s10482-025-02100-0","url":null,"abstract":"<p><p>Given the impact of abiotic and biotic factors on agriculture, it is crucial to adopt sustainable and environmentally friendly practices to enhance yields. One approach that is gaining prominence is the utilization of plant-growth-promoting bacteria (PGPB) in mainstream agriculture. Interactions between plants and microbes in the rhizosphere play a vital role in plant health, productivity, and soil fertility. PGPB, particularly endophytes that establish close associations with plants, have shown success in promoting plant growth and protecting plants against diseases and abiotic stresses through various mechanisms, including biological nitrogen fixation, phosphate solubilization, siderophore production, phytohormone production, ACC-deaminase activity, induced systemic resistance, quorum sensing, hydrogen cyanide synthesis, hydrolytic enzyme and colonization niche specialization. While there is no one-size-fits-all strategy for promoting the growth of every plant under every condition, certain strategies discussed in this review already demonstrate significant promise. This review provides an overview of the current understanding of the fundamental mechanisms employed by PGPB, and emphasizes innovative methods for identifying and developing promising strains to serve as bio-inputs. Likewise, the aim of this review is to present a summary of the crucial role that soil-plant-microorganisms interactions play in the development of efficient bioinoculants, as well as to explore biotechnological advances. Bacteria from genera such as Azospirillum, Bacillus, Bradyrhizobium, and Pseudomonas have already been widely studied and applied for these purposes. However, further research is needed to improve strain performance and enhance the potential of multifunctional microorganisms. Deepening the genetic and biochemical understanding of these mechanisms and expanding their applications is essential to foster safe and sustainable agronomic practices.</p>","PeriodicalId":50746,"journal":{"name":"Antonie Van Leeuwenhoek International Journal of General and Molecular Microbiology","volume":"118 7","pages":"88"},"PeriodicalIF":1.8,"publicationDate":"2025-06-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144250593","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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