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Improved taxonomic and gene sampling advance the knowledge of deep relationships within Macrodasyida (Gastrotricha) 改进的分类和基因采样推进了对巨腹目(腹头目)深层关系的认识。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-12-16 DOI: 10.1111/cla.70013
Agata Cesaretti, Anush Kosakyan, Francesco Saponi, M. Antonio Todaro
{"title":"Improved taxonomic and gene sampling advance the knowledge of deep relationships within Macrodasyida (Gastrotricha)","authors":"Agata Cesaretti,&nbsp;Anush Kosakyan,&nbsp;Francesco Saponi,&nbsp;M. Antonio Todaro","doi":"10.1111/cla.70013","DOIUrl":"10.1111/cla.70013","url":null,"abstract":"<p>Advances in Macrodasyida (Gastrotricha) phylogenetics, fuelled by new species discoveries and molecular data, are reshaping taxonomic classifications. Molecular analyses suggest polyphyly in Cephalodasyidae and Macrodasyidae, yet insufficient sampling continues to obscure precise relationships. Our study seeks to enhance the resolution of Macrodasyida's internal phylogeny through expanded taxonomic and molecular sampling. We obtained 63 new sequences from 21 Macrodasyidan species, integrating them with published data. Our dataset includes representatives from nine Macrodasyida families and 21 genera, alongside two chaetonotidans. We analysed the concatenated sequences of three genes (<i>18S</i>, <i>28S</i> rRNA, <i>COI</i> mtDNA) from 51 terminals using Maximum Parsimony, Maximum Likelihood and Bayesian Inference. Our findings confirm the polyphyly of Cephalodasyidae. <i>Dolichodasys</i> and <i>Paradasys</i> cluster with Redudasyidae, while <i>Cephalodasys</i> and <i>Mesodasys</i> form unrelated lineages. <i>Cephalodasys mahoae</i> is nested within <i>Paradasys</i> rather than <i>Cephalodasys</i>, suggesting an original misidentification. The phylogenetic placement of <i>Pleurodasys</i> remains uncertain. Macrodasyidae is non-monophyletic, with <i>Urodasys</i> forming an independent lineage. The first molecular data ever obtained for <i>Dendrodasys</i> hint that the family Dactylopodolidae is likely polyphyletic as well. We propose an updated classification of Macrodasyida, introducing Mesodasyidae fam. nov., Urodasyidae fam. nov. and <i>Paraurodasys</i> gen. nov. Furthermore, we reassign <i>Dolichodasys</i> and <i>Paradasys</i> to Redudasyidae and <i>Cephalodasys mahoe</i> to <i>Paradasys</i>.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"42 1","pages":"25-45"},"PeriodicalIF":6.2,"publicationDate":"2025-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12789844/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145764544","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Occurrence data and range maps in endemicity analysis: Data choice matters 地方性分析中的发生数据和范围图:数据选择问题。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-11-08 DOI: 10.1111/cla.70017
M. Dolores Casagranda, Romina V. Semhan, Diego Almeida-Silva
{"title":"Occurrence data and range maps in endemicity analysis: Data choice matters","authors":"M. Dolores Casagranda,&nbsp;Romina V. Semhan,&nbsp;Diego Almeida-Silva","doi":"10.1111/cla.70017","DOIUrl":"10.1111/cla.70017","url":null,"abstract":"<div>\u0000 \u0000 <p>The reliability of biogeographic analyses depends strongly on the type and quality of species distribution data. We compared point-based occurrence records and polygonal range maps for 160 species of the lizard genus <i>Liolaemus</i>, assessing their influence on the identification of areas of endemism across three spatial scales using endemicity analysis. Our results show that range maps consistently overestimate distributions, often identifying broad endemic areas with low species overlap—patterns likely inflated by commission errors. In contrast, occurrence data yield fewer but more localized and compositionally distinct areas of endemism, especially at finer spatial scales, capturing spatial discontinuities and narrow-range endemism more effectively. Occurrence data also proved to be more sensitive to spatial scale, revealing fine-grained biogeographic patterns often missed by range maps, particularly in mountainous or environmentally heterogeneous regions. Despite potential biases from uneven sampling, occurrence data provide a more ecologically meaningful representation of endemism, especially for habitat specialists or narrowly distributed species. These findings highlight that data choice significantly affects the detection of endemism, with direct implications for biodiversity assessments and conservation planning. Researchers should carefully consider data sources in light of their study taxa's ecological and geographic traits to ensure robust and scale-appropriate analyses.</p>\u0000 </div>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"42 1","pages":"95-107"},"PeriodicalIF":6.2,"publicationDate":"2025-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145472117","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Passive uplift of montane biotas: recent advances 山地生物被动隆升:最新进展。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-11-06 DOI: 10.1111/cla.70014
Michael Heads, Milen Marinov, Duncan A. Nicol, Patricio Saldivia
{"title":"Passive uplift of montane biotas: recent advances","authors":"Michael Heads,&nbsp;Milen Marinov,&nbsp;Duncan A. Nicol,&nbsp;Patricio Saldivia","doi":"10.1111/cla.70014","DOIUrl":"10.1111/cla.70014","url":null,"abstract":"<p>Passive tectonic uplift of populations is being discussed in a growing number of studies from many regions around the world, usually for areas that have undergone dramatic uplift in fold mountains (orogens). It is also proposed in belts of uplift along the margins (“shoulders”) of rifts, as in south-eastern Brazil, West Africa and the rift mountains of Central and East Africa. Many groups show signs of having been left stranded inland with the retreat of inland epicontinental seas in the Cretaceous, consistent with the long-term persistence and passive uplift of populations <i>in situ</i>. Passive uplift provides a mechanism in which groups are elevated and also a mode of speciation that can help explain the anomalous, high diversity of areas such as the Andes (“Humboldt's enigma”). We suggest that one focus of future research could be on the location of elevational anomalies in species distributions. Studying these will require good information on the three-dimensional distribution of species, and this is still lacking for most groups. If these data were available, it would be possible to use niche models to identify populations at anomalous elevations.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"42 1","pages":"63-78"},"PeriodicalIF":6.2,"publicationDate":"2025-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145460723","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Global diversification of coastal Cafius rove beetles (Coleoptera: Staphylinidae) driven by ocean currents since the early Miocene 中新世早期以来洋流驱动下的全球沿海棘叶瓢虫(鞘翅目:棘叶瓢虫科)多样性。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-11-03 DOI: 10.1111/cla.70016
Kee-Jeong Ahn, Jeong-Hun Song
{"title":"Global diversification of coastal Cafius rove beetles (Coleoptera: Staphylinidae) driven by ocean currents since the early Miocene","authors":"Kee-Jeong Ahn,&nbsp;Jeong-Hun Song","doi":"10.1111/cla.70016","DOIUrl":"10.1111/cla.70016","url":null,"abstract":"<p>As our understanding of abiotic factors continues to grow, along with insights into the biological traits of organisms, so too does the sophistication of studies exploring global diversification and spatio-temporal distribution patterns. The global distribution of coastal <i>Cafius</i> rove beetles, combined with the endemic distribution patterns observed in its subclades, suggests repeated colonization of new regions via ocean surface currents, followed by local diversification and speciation. We reached these conclusions by reconstructing the <i>Cafius</i> phylogeny and a time-calibrated <i>Cafius</i> phylogeny, then conducting a spatio-temporal biogeographic analysis. Our study is based on sequences from 10 genetic loci, including six nuclear and four mitochondrial genes (6891 bp). Our findings support the monophyly of <i>Cafius</i>, with an estimated origin in the early Miocene (17.91 Ma) along the coasts of Europe and Australia. From this origin, transoceanic dispersal events led to the colonization of the coasts. These patterns suggest that ancestral <i>Cafius</i> lineages initially migrated to continental coastlines, with subsequent vicariance and <i>in situ</i> speciation. The directionality of these colonization events closely aligns with global ocean surface current patterns and the geological and climatic history of the regions involved. Biological adaptations likely facilitated their survival and subsequent diversification in coastal habitats worldwide.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"42 1","pages":"79-94"},"PeriodicalIF":6.2,"publicationDate":"2025-11-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12789850/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145439774","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The evolutionary history of Rhinocerotidae: phylogenetic insights and climate influences 犀牛科的进化史:系统发育、气候影响和保护意义。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-10-26 DOI: 10.1111/cla.70015
Antonio Borrani, Paweł Mackiewicz, Oleksandr Kovalchuk, Zoltán Barkaszi, Chiara Capalbo, Anastasiia Dubikovska, Urszula Ratajczak-Skrzatek, Maxim Sinitsa, Krzysztof Stefaniak, Paul P.A. Mazza
{"title":"The evolutionary history of Rhinocerotidae: phylogenetic insights and climate influences","authors":"Antonio Borrani,&nbsp;Paweł Mackiewicz,&nbsp;Oleksandr Kovalchuk,&nbsp;Zoltán Barkaszi,&nbsp;Chiara Capalbo,&nbsp;Anastasiia Dubikovska,&nbsp;Urszula Ratajczak-Skrzatek,&nbsp;Maxim Sinitsa,&nbsp;Krzysztof Stefaniak,&nbsp;Paul P.A. Mazza","doi":"10.1111/cla.70015","DOIUrl":"10.1111/cla.70015","url":null,"abstract":"<p>Family Rhinoceroidae exhibits a complex and debated phylogeny, with fossil records spanning over 50 million years. This study presents a comprehensive phylogenetic total-evidence analysis of Rhinocerotidae to date, integrating morphological, molecular, fossil and paleoclimatic data within maximum parsimony, maximum likelihood, Bayesian and time-calibrated frameworks. A matrix of 106 taxa and 534 morphological characters, including 11 newly defined ones, was assembled through systematic revision of previously ambiguous characters. In contrast to earlier studies, a fossil-based outgroup was selected in place of extant <i>Tapirus</i> to improve character polarity and reduce topological artefacts associated with distant outgroup choice. The resulting cladograms resolve longstanding conflicts in rhinocerotid systematics and identify many supported clades. Analyses of the studied clades revealed an association between lineage diversification and climatic thresholds, which appear to have mediated ecological turnover and the differential persistence of traits. The application of an integrative total-evidence approach illustrates the role of climatic and ecological filters in shaping the evolutionary trajectories of megafaunal lineages and contributes to broader methodological discussions in phylogenetics. The analytical framework developed provides a comparative model applicable to both extinct and extant taxa, reaffirming the value of rigorous cladistic methods in paleobiology and systematics.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"42 1","pages":"46-62"},"PeriodicalIF":6.2,"publicationDate":"2025-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145373308","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
New evidence for an old acquaintance: Neoprocoela edentata from the Oligocene of central Patagonia is the oldest species of Nannophryne (Anura: Bufonidae) 一个老熟人的新证据:来自巴塔哥尼亚中部渐新世的齿状新元是最古老的Nannophryne(无尾目:蟾蜍科)物种。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-10-22 DOI: 10.1111/cla.70007
Laura Nicoli, Martín O. Pereyra, Agustín J. Elias-Costa, J. Sebastián Barrionuevo, Julián Faivovich
{"title":"New evidence for an old acquaintance: Neoprocoela edentata from the Oligocene of central Patagonia is the oldest species of Nannophryne (Anura: Bufonidae)","authors":"Laura Nicoli,&nbsp;Martín O. Pereyra,&nbsp;Agustín J. Elias-Costa,&nbsp;J. Sebastián Barrionuevo,&nbsp;Julián Faivovich","doi":"10.1111/cla.70007","DOIUrl":"10.1111/cla.70007","url":null,"abstract":"<p><i>Neoprocoela edentata</i> is a fossil anuran collected in Scarritt Pocket, Patagonia, Argentina. This locality provided the first described pre-Neogene batrachofauna of South America, which is also one of the few known to include representatives of extant taxa. <i>Neoprocoela edentata</i> shows an unusual combination of characters, and it has alternatively been related to Bufonidae or to a polyphyletic assemblage including Calyptocephalellidae and Telmatobiidae. In this article, we redescribe the single specimen of <i>N. edentata</i>, complementing the examination with micro-CT scan reconstructions, and expanding its original description. This results in a combination of character states unique to Bufonidae, allowing us to confidently assign <i>N. edentata</i> to this family. Then, we performed a total evidence phylogenetic analysis, including molecular and osteological data, to evaluate the phylogenetic relationships of <i>N. edentata</i> within Bufonidae. This species was recovered in a strongly supported clade with the extant genus <i>Nannophryne</i>; thus, <i>Neoprocoela</i> is considered a junior synonym of this genus, retaining <i>edentata</i> as a valid species. Finally, considering the geographic and stratigraphic provenance of the fossil remains, we discuss its value as evidence of the early evolution of South American toads and as an absolute-age calibration point, something relatively unusual for neobatrachian fossil species of that age.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"41 6","pages":"600-623"},"PeriodicalIF":6.2,"publicationDate":"2025-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145349840","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Phylogenomic reconstruction reveals deep reticulate evolutionary history and polyphyletic genus (Boeica) in the subtribe Leptoboeinae (Gesneriaceae), with description of a novel genus 系统基因组重建揭示了苦苣苔科苦苣苔亚族的深网状进化历史和多系属(Boeica),并描述了一个新属。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-10-08 DOI: 10.1111/cla.70010
Fengmao Yang, Shaojun Ling, Ruxuan Yang, Fang Wen, Wei Gu, Xiangzhou Hu, Liewen Lin, Yizhi Wang, Jie Cai, Mingxun Ren, Michael Möller, Lei Cai
{"title":"Phylogenomic reconstruction reveals deep reticulate evolutionary history and polyphyletic genus (Boeica) in the subtribe Leptoboeinae (Gesneriaceae), with description of a novel genus","authors":"Fengmao Yang,&nbsp;Shaojun Ling,&nbsp;Ruxuan Yang,&nbsp;Fang Wen,&nbsp;Wei Gu,&nbsp;Xiangzhou Hu,&nbsp;Liewen Lin,&nbsp;Yizhi Wang,&nbsp;Jie Cai,&nbsp;Mingxun Ren,&nbsp;Michael Möller,&nbsp;Lei Cai","doi":"10.1111/cla.70010","DOIUrl":"10.1111/cla.70010","url":null,"abstract":"<p>The subtribe Leptoboeinae (Gesneriaceae) has undergone numerous taxonomic revisions due to ambiguous generic boundaries, complicating conservation and utilization efforts. In this study, we employed transcriptomes from a representative clade within the subtribe to construct a low-copy nuclear (LCN) gene data set. Plastid genomes and LCN genes, assembled from 66 samples, were used to investigate the phylogenetic structure, reticulate evolution and divergence times among the species of this subtribe. Firstly, phylogenetic analysis revealed that <i>Boeica</i> is polyphyletic and identified a new genus, <i>Crassicaulis</i>, which forms a sister group to the remaining genera within the subtribe. Secondly, complex cytonuclear conflicts and gene tree incongruence at genus-level nodes were identified. Multiple lines of evidence revealed two reticulate evolutionary events within this lineage, suggesting that <i>Boeica porosa</i> and <i>B. stolonifera</i>, as well as <i>Boeica enpingensis</i>, underwent hybridization during their speciation processes. Finally, divergence time estimation revealed that most genera emerged between 17 and 12 Ma. This study provides a well-resolved phylogenetic framework for the subtribe Leptoboeinae, describes a new genus and elucidates the subtribe's intricate reticulate evolutionary history. Furthermore, we propose that the mid-Miocene East Asian monsoon played a pivotal role in the diversification of this lineage.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"41 6","pages":"565-580"},"PeriodicalIF":6.2,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145253568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Integrating morphological and phylogenomic data reveals the taxonomic puzzles, incongruence in phylogenies and cryptic species in Allium section Bromatorrhiza Ekberg 综合形态学和系统发育数据,揭示了葱属植物的分类困惑、系统发育不一致和隐种。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-10-08 DOI: 10.1111/cla.70012
Yuan Wang, Rui-Yu Cheng, Wei-Yan Tan, Jia-Hui Sun, Jin-Bo Tan, Yan Yu, Song-Dong Zhou, Xing-Jin He, Deng-Feng Xie
{"title":"Integrating morphological and phylogenomic data reveals the taxonomic puzzles, incongruence in phylogenies and cryptic species in Allium section Bromatorrhiza Ekberg","authors":"Yuan Wang,&nbsp;Rui-Yu Cheng,&nbsp;Wei-Yan Tan,&nbsp;Jia-Hui Sun,&nbsp;Jin-Bo Tan,&nbsp;Yan Yu,&nbsp;Song-Dong Zhou,&nbsp;Xing-Jin He,&nbsp;Deng-Feng Xie","doi":"10.1111/cla.70012","DOIUrl":"10.1111/cla.70012","url":null,"abstract":"<p>Phylogenomic data from enriched informative loci yield higher resolution insights for clarifying taxonomic relationships and reconstructing the evolutionary histories of complex taxa. Section <i>Bromatorrhiza</i> (<i>Allium</i>, Amaryllidaceae), a small taxon of 11 species, has long been plagued by taxonomic controversies and persistent, unresolved phylogenetic incongruence. Here, we collected transcriptome and plastome data from 34 samples representing multiple populations across all species in this section. From these, 1993 low-copy nuclear genes and 110 plastid genes were extracted for phylogenetic reconstruction. Integrating phylogenomic and morphological approaches, we investigated species relationships and the causes of phylogenetic discordance. Our results provide robust clarification of interspecific relationships and identify 10 diagnostic morphological traits in this section. The <i>Allium hookeri</i> Alliance (AHA) was resolved as a monophyletic clade comprising seven species. We elevated <i>Allium hookeri</i> var. <i>muliense</i> to species status, formally describing it as <i>A. muliense</i>, and newly describe a cryptic species as <i>Allium xui</i> Y. Wang, D.F. Xie &amp; X.J. He, sp. nov. Furthermore, we demonstrate that extensive phylogenetic discordance within this section is primarily attributable to incomplete lineage sorting (ILS) and reticulate evolution. By synthesizing phylogenetic and morphological evidence, we propose refined taxonomic treatments. Our findings resolve long-standing taxonomic ambiguities and phylogenetic discordance in section <i>Bromatorrhiza</i>.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"42 1","pages":"1-24"},"PeriodicalIF":6.2,"publicationDate":"2025-10-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145253518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
They come in all sizes: integrative systematics and morphological radiation of Scherotheca (Lumbricidae, Crassiclitellata) 它们有各种各样的大小:综合系统学和形态辐射的石竹(蚓科,粗毛虫)。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-09-13 DOI: 10.1111/cla.70011
Daniel Fernández Marchán, Sylvain Gérard, Alejandro Martínez Navarro, Alberto Piris, Mickaël Hedde, Thibaud Decaëns, Marta Novo
{"title":"They come in all sizes: integrative systematics and morphological radiation of Scherotheca (Lumbricidae, Crassiclitellata)","authors":"Daniel Fernández Marchán,&nbsp;Sylvain Gérard,&nbsp;Alejandro Martínez Navarro,&nbsp;Alberto Piris,&nbsp;Mickaël Hedde,&nbsp;Thibaud Decaëns,&nbsp;Marta Novo","doi":"10.1111/cla.70011","DOIUrl":"10.1111/cla.70011","url":null,"abstract":"<p><i>Scherotheca</i> is amongst the most diverse earthworm genera within Lumbricidae, exhibiting striking ecomorphological radiation—from small epigeic-like forms to giant anecic species. Accurate systematics is critical for exploring such diversification. We sequenced 16 previously unrepresented species plus additional populations across their range for five molecular markers, inferring phylogenetic relationships via maximum likelihood, Bayesian inference and time-calibrated analyses, as well as ancestral area and character state reconstructions. <i>Scherotheca</i> was recovered as monophyletic, but previous subgeneric divisions were unsupported. With the addition of four new species, <i>Scherotheca</i> currently includes 56 species: Cryptic diversity within <i>Scherotheca aquitania</i> may increase this number upon further research. Biogeographic analyses supported a middle Eocene origin (~47 Mya) on the Corsica–Sardinia–Provence microplate, followed by westward expansion driven by paleogeographic events, such as Pyrenean uplift and marine introgressions. Multiple Corsican clades evolved independently, displaying morphological radiation under insular pressures. Ancestral reconstructions indicated the last common ancestor resembled the mid-sized <i>Scherotheca portcrosana</i>. The radiation of body size was particularly pronounced in Atlantic regions, likely shaped by ecological, climatic and biotic pressures. This study provides the most comprehensive evolutionary framework for <i>Scherotheca</i>, serving as a reference for further research on Western European earthworm diversification, functional trait evolution and biogeographic history.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"41 6","pages":"581-599"},"PeriodicalIF":6.2,"publicationDate":"2025-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/cla.70011","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145056151","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Decoding the phylogeny of the genus Merodon Meigen (Diptera, Syrphidae): a synergistic approach with molecular and morphological data 解码美蚜属的系统发育(双翅目,蚜科):分子和形态数据的协同方法。
IF 6.2 2区 生物学
Cladistics Pub Date : 2025-08-28 DOI: 10.1111/cla.70009
Sanja Veselić, Ante Vujić, Snežana Radenković, Ljiljana Šašić Zorić, Mihajla Djan, Gunilla Ståhls
{"title":"Decoding the phylogeny of the genus Merodon Meigen (Diptera, Syrphidae): a synergistic approach with molecular and morphological data","authors":"Sanja Veselić,&nbsp;Ante Vujić,&nbsp;Snežana Radenković,&nbsp;Ljiljana Šašić Zorić,&nbsp;Mihajla Djan,&nbsp;Gunilla Ståhls","doi":"10.1111/cla.70009","DOIUrl":"10.1111/cla.70009","url":null,"abstract":"<p>The genus <i>Merodon</i> (Diptera: Syrphidae) is the most species-rich hoverfly genus in Europe. Recent studies have focused on resolving species-level taxonomy, species delimitation, or phenotypic traits analyses, but only a few authors have dealt with its intra-generic phylogenetic relationships. In this study, we compiled a dataset of adult morphological characters capturing the phylogenetically informative characters for the genus <i>Merodon</i>, as well as the most closely related co-tribal taxa. We also generated molecular data for a set of genes frequently used for molecular systematic studies of insects. Molecular and morphological datasets were analysed together to establish the formal subgeneric classification of <i>Merodon</i> using parsimony and maximum likelihood approaches. For the molecular dataset, the mitochondrial <i>COI</i> and nuclear <i>28S rRNA</i> and <i>18S rRNA</i> gene sequences were used, a total of 2947 bp. For the morphological dataset, 204 characters were analysed. The combined analysis involved 3151 characters and 80 taxa. Our analyses supported five subgenera within the genus <i>Merodon</i> described and diagnosed here: <i>Albimerodon</i> subgen. nov., <i>Auremerodon</i> subgen. nov., <i>Avidumerodon</i> subgen. nov., <i>Desutumerodo</i><i>n</i> subgen. nov., and <i>Natamerodon</i> subgen. nov.</p>","PeriodicalId":50688,"journal":{"name":"Cladistics","volume":"41 6","pages":"545-564"},"PeriodicalIF":6.2,"publicationDate":"2025-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144977032","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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