Mitochondrial Dna最新文献_第8页

The complete mitochondrial genome of Java warty pig (Sus verrucosus). 爪哇疣猪(Sus verrucosus)线粒体全基因组。

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2014-01-17 DOI: 10.3109/19401736.2013.873932

Jie Fan, Chun-Hong Li, Wei Shi

引用次数: 3

Complete mitochondrial genome of the serotine bat (Eptesicus serotinus) in Korea. 韩国大棕蝠(Eptesicus serotinus)的全线粒体基因组。

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2013-07-31 DOI: 10.3109/19401736.2013.819503

Taek Woo Nam, Kwang Bae Yoon, Jae Youl Cho, Yung Chul Park

引用次数: 7

Species identification and evolutionary inference of the genera Megalobrama and Parabramis (Cyprinidae: Cultrinae) in China. 中国巨蟹属和副巨蟹属的物种鉴定及进化推断(鲤科:鲤科)。

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2013-09-05 DOI: 10.3109/19401736.2013.823166

X H Bai, X W Guo, X J Zhang, W Song, Y H Li, W Luo, X J Cao, W M Wang

引用次数: 6

The complete mitogenome of Stripe-Backed Shrew, Sorex cylindricauda (Soricidae). 条纹背鼩鼱有丝分裂全基因组的研究。

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2014-01-10 DOI: 10.3109/19401736.2013.855756

Shunde Chen, Feiyun Tu, Xiuyue Zhang, Wei Li, Guiying Chen, Hao Zong, Qiong Wang

引用次数: 18

Blood from a turnip: tissue origin of low-coverage shotgun sequencing libraries affects recovery of mitogenome sequences. 萝卜血:低覆盖率鸟枪测序文库的组织来源影响有丝分裂基因组序列的恢复。

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2013-10-14 DOI: 10.3109/19401736.2013.840588

F Keith Barker, Sara Oyler-McCance, Diana F Tomback

{"title":"Blood from a turnip: tissue origin of low-coverage shotgun sequencing libraries affects recovery of mitogenome sequences.","authors":"F Keith Barker, Sara Oyler-McCance, Diana F Tomback","doi":"10.3109/19401736.2013.840588","DOIUrl":"https://doi.org/10.3109/19401736.2013.840588","url":null,"abstract":"Next generation sequencing methods allow rapid, economical accumulation of data that have many applications, even at relatively low levels of genome coverage. However, the utility of shotgun sequencing data sets for specific goals may vary depending on the biological nature of the samples sequenced. We show that the ability to assemble mitogenomes from three avian samples of two different tissue types varies widely. In particular, data with coverage typical of microsatellite development efforts (∼1×) from DNA extracted from avian blood failed to cover even 50% of the mitogenome, relative to at least 500-fold coverage from muscle-derived data. Researchers should consider possible applications of their data and select the tissue source for their work accordingly. Practitioners analyzing low-coverage shotgun sequencing data (including for microsatellite locus development) should consider the potential benefits of mitogenome assembly, including internal barcode verification of species identity, mitochondrial primer development, and phylogenetics. ","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 3","pages":"384-8"},"PeriodicalIF":0.0,"publicationDate":"2015-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.840588","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31800231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 12

Complete mitochondrial genome of Takydromus sexlineatus (Squamata, Lacertidae). 六线草的线粒体全基因组。

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2013-09-19 DOI: 10.3109/19401736.2013.830299

Ping-Sheng Qin, De-Long Zeng, Li-Xia Hou, Xiao-Wen Yang, Xin-Min Qin

引用次数: 5

Population genetic diversity of the northern snakehead (Channa argus) in China based on the mitochondrial DNA control region and adjacent regions sequences. 基于线粒体DNA控制区和邻区序列的中国北方黑鱼种群遗传多样性研究

Mitochondrial Dna Pub Date : 2015-06-01 Epub Date: 2014-04-14 DOI: 10.3109/19401736.2014.908355

Aiguo Zhou, Xiaolei Zhuo, Qing Zou, Jintao Chen, Jixing Zou

{"title":"Population genetic diversity of the northern snakehead (Channa argus) in China based on the mitochondrial DNA control region and adjacent regions sequences.","authors":"Aiguo Zhou, Xiaolei Zhuo, Qing Zou, Jintao Chen, Jixing Zou","doi":"10.3109/19401736.2014.908355","DOIUrl":"https://doi.org/10.3109/19401736.2014.908355","url":null,"abstract":"Genetic variation and population structure of northern snakehead (Channa argus) from eight locations in China were investigated using mitochondrial DNA control region and adjacent regions sequences. Sequence analysis showed that there were 105 haplotypes in 260 individuals, 48 unique haplotypes and 57 shared haplotypes, but no common haplotype shared by all populations. As a whole, the haplotype diversity was high (h=0.989), while the nucleotide diversity was low (π=0.00482). AMOVA analysis detected significant genetic differentiation among all eight populations (FST=0.328, p<0.01) and 66.17% of the total variance was resulted from intra-population differentiation. UPGMA analysis indicated that the eight populations could be divided into four major clusters, which was consistent with that the eight sampled locations were belonged to four isolated river systems. The neutrality and mismatch distribution tests suggested that the eight populations of C. argus in the sampling locations underwent recent population expansion. Among the eight populations, the Erhai Lake population may represent a unique genetic resource and therefore needs to be conserved.","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 3","pages":"341-9"},"PeriodicalIF":0.0,"publicationDate":"2015-06-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2014.908355","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32256013","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 7

Analysis of BRCA1 and mtDNA haplotypes and mtDNA polymorphism in familial breast cancer. 家族性乳腺癌BRCA1和mtDNA单倍型及mtDNA多态性分析。

Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-08-28 DOI: 10.3109/19401736.2013.825773

Cristina Gutiérrez Povedano, Josefa Salgado, Carmen Gil, Maitane Robles, Ana Patiño-García, Jesús García-Foncillas

{"title":"Analysis of BRCA1 and mtDNA haplotypes and mtDNA polymorphism in familial breast cancer.","authors":"Cristina Gutiérrez Povedano, Josefa Salgado, Carmen Gil, Maitane Robles, Ana Patiño-García, Jesús García-Foncillas","doi":"10.3109/19401736.2013.825773","DOIUrl":"https://doi.org/10.3109/19401736.2013.825773","url":null,"abstract":"Mitochondrial DNA (mtDNA) defects have been postulated to play an important role in the modulation and/or progression of cancer. In the past decade, a wide spectrum of mtDNA variations have been suggested as potentially sensitive and specific biomarkers for several human cancer types. In this context, single nucleotide polymorphisms (SNPs) described as protective or risk variants have been published, in particular in breast cancer, though not without controversy. Moreover, many mtDNA haplogroups have been associated with different phenotypes and diseases. We genotyped 18 SNPs, 15 of them defining European mtDNA haplogroups, including SNPs described as protective or risk variants, 7 SNPs that determine BRCA1 haplotypes and a BRCA1 intron 7 polymorphism. We included in this study 90 Caucasian unrelated women with breast cancer with familial criteria and 96 controls. Our aim was to clarify the importance of any of these SNPs, mitochondrial haplogroups and BRCA1 haplotypes in the modulation of breast cancer. We detected no significant differences in the distribution of BRCA1 haplotypes between patients and controls. Haplogroup U and the 12308G variant of mtDNA were overrepresented within the control group (p = 0.005 and p = 0.036, respectively) compared to breast cancer. Finally, we identified a significant association between the BRCA1 intron 7 polymorphism and BRCA1 haplotypes. Specifically, (TTC)6/6 and (TTC)6/7 genotypes with the seven polymorphic site cassette of \"H2-like\" haplotypes, and the (TTC)7/7 genotype associated with the \"H1-like\" haplotypes (p < 0.001).","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"227-31"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.825773","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31689702","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 17

Complete female mitochondrial genome of Anodonta anatina (Mollusca: Unionidae): confirmation of a novel protein-coding gene (F ORF). andonta anatina(软体动物:联合科)完整的雌性线粒体基因组:一个新的蛋白质编码基因(forf)的确认。

Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-09-11 DOI: 10.3109/19401736.2013.823176

Marianna Soroka, Artur Burzyński

引用次数: 18

Complete mitochondrial genome of Pseudorasbora elongata (Cypriniformes: Cyprinidae). 长形伪鲤(鲤形目:鲤科)线粒体全基因组。

Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-09-11 DOI: 10.3109/19401736.2013.823184

Anhui Chen, Rong Xia, Guangchun Lei, Cuizhang Fu

引用次数: 9