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Mitochondrial Dna最新文献

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The complete mitochondrial genome of Blue Pansy, Junonia orithya (Lepidoptera: Nymphalidae: Nymphalinae). 蓝三色堇，Junonia orithya(鳞翅目:蛱蝶科:蛱蝶科)线粒体全基因组。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-09-11 DOI: 10.3109/19401736.2013.823182
Qinghui Shi, Dunyuan Huang, Yunliang Wang, Jiasheng Hao
{"title":"The complete mitochondrial genome of Blue Pansy, Junonia orithya (Lepidoptera: Nymphalidae: Nymphalinae).","authors":"Qinghui Shi,&nbsp;Dunyuan Huang,&nbsp;Yunliang Wang,&nbsp;Jiasheng Hao","doi":"10.3109/19401736.2013.823182","DOIUrl":"https://doi.org/10.3109/19401736.2013.823182","url":null,"abstract":"<p><p>The complete mitochondrial genome (mitogenome) of Junonia orithya Linnaeus (Lepidoptera: Nymphalidae: Nymphalinae) is determined to be 15,214 bp in length, including 37 typical mitochondrial genes and an AT-rich region. Its gene order and orientation are identical to those of other butterfly species. All PCGs are initiated by typical ATN codons, except for cox1 gene which is started by CGA codon. Nine genes use complete termination codon (TAA), whereas the cox1. cox2. nad1 and nad4 genes end with single T. Except for trnS1(AGN), all tRNA genes display typical secondary cloverleaf structures as those of other insects. The 331 bp long AT-rich region contains several features common to the other lepidopterans, such as the ATAGA motif followed by a 18 bp poly-T stretch, two microsatellite-like (TA)9 elements, a 5 bp poly-A stretch immediately upstream of trnM gene.</p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"245-6"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.823182","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31720050","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Complete mitochondrial DNA genome of Microphysogobio brevirostris (Cypriniformes: Cyprinidae). 短鼻微藻(鲤形目:鲤科)线粒体DNA全基因组。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-09-19 DOI: 10.3109/19401736.2013.825781
Chung-Yao Cheng, Jiang-Ping Wang, Chuan-Wen Ho, Ju-Wen Cheng, Yih-Tsong Ueng
{"title":"Complete mitochondrial DNA genome of Microphysogobio brevirostris (Cypriniformes: Cyprinidae).","authors":"Chung-Yao Cheng,&nbsp;Jiang-Ping Wang,&nbsp;Chuan-Wen Ho,&nbsp;Ju-Wen Cheng,&nbsp;Yih-Tsong Ueng","doi":"10.3109/19401736.2013.825781","DOIUrl":"https://doi.org/10.3109/19401736.2013.825781","url":null,"abstract":"<p><p>In this study, we sequenced the complete mitochondrial genome of Microphysogobio brevirostris (Cypriniformes, Cyprinidae), an endemic primary freshwater fish in Taiwan. This mitochondrial genome, consisting of 16,608 base pairs (bp), encoded 13 protein-coding genes, 2 ribosomal RNAs, 22 transfer RNAs, and a non-coding control region as those found in other vertebrates, with the gene synteny identical to that of typical vertebrates. Control region (D-Loop), of 929 bp lengths long, is located between tRNA(Pro) and tRNA(Phe). The overall base composition of the heavy strand shows T 26.28%, C 26.62%, A 30.26%, and G 16.85%, with a slight AT bias of 56.53%.</p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"293-4"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.825781","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31742088","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Mitochondrial genome of the Anas acuta (Anatidae: Anas). 尖吻Anas的线粒体基因组（Anas科：Anas）。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-09-19 DOI: 10.3109/19401736.2013.825783
Liangheng Yan, Chenli Zhang, Tao Pan, Wenliang Zhou, Chaochao Hu, Qing Chang, Baowei Zhang
{"title":"Mitochondrial genome of the Anas acuta (Anatidae: Anas).","authors":"Liangheng Yan,&nbsp;Chenli Zhang,&nbsp;Tao Pan,&nbsp;Wenliang Zhou,&nbsp;Chaochao Hu,&nbsp;Qing Chang,&nbsp;Baowei Zhang","doi":"10.3109/19401736.2013.825783","DOIUrl":"https://doi.org/10.3109/19401736.2013.825783","url":null,"abstract":"<p><p>The Northern Pintail (Anas acuta) is a common large duck with widely geographic distribution. In this study, the complete mitochondrial genome of A. acuta (16,599 bp in length) was been analyzed for building the database. Similar to the typical mtDNA of vertebrates, it contained 37 genes (13 protein-coding genes, 2 rRNA genes and 22 tRNA genes) and a non-coding region (D-loop). All the genes in A. acuta were distributed on the H-strand, except for the ND6 subunit gene and 10 tRNA genes which were encoded on the L-strand.</p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"297-8"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.825783","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31742091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Complete mitochondrial genome of the freshwater goby Odontobutis potamophila (Perciformes: Odontobutidae). 淡水虾虎鱼(齿形目:齿虎科)线粒体全基因组的研究。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-09-19 DOI: 10.3109/19401736.2013.825784
Zhihong Ma, Xuefen Yang, Xiujie Zhang, Ruibin Yang
{"title":"Complete mitochondrial genome of the freshwater goby Odontobutis potamophila (Perciformes: Odontobutidae).","authors":"Zhihong Ma,&nbsp;Xuefen Yang,&nbsp;Xiujie Zhang,&nbsp;Ruibin Yang","doi":"10.3109/19401736.2013.825784","DOIUrl":"https://doi.org/10.3109/19401736.2013.825784","url":null,"abstract":"<p><p>In this study, we cloned and sequenced the complete mitochondrial genome of Odontobutis potamophila. The genome was found to be 16,932 bp in size with a mostly conserved structural organization when compared with that of other teleost fish. It contained 37 genes (13 protein-coding genes, 22 transfer RNA genes, and 2 ribosomal RNA genes) and 2 main non-coding regions (the control region and the origin of the light strand replication). Rearrangements of tRNAs (tRNA-Ser, tRNA-Leu, tRNA-His) and three additional longer non-coding regions (43 bp, 336 bp and 76 bp, respectively) were present between the ND4 and ND5 genes. Within the control region, typical conserved domains, such as the termination-associated sequence, central and conserved sequence blocks domains were identified. This mitogenome sequence data would contribute to better understanding population genetics and phylogenetic analysis of the Odontobutidae.</p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"299-300"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.825784","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31742095","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
Complete mitochondrial genome of the blue shark Prionace glauca (Elasmobranchii: Carcharhiniformes). 青鲨(蓝鳃目:鲨目)线粒体全基因组的研究。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2013-09-19 DOI: 10.3109/19401736.2013.825790
Xiao Chen, Dan Xiang, Weiming Ai, Xiaofang Shi
{"title":"Complete mitochondrial genome of the blue shark Prionace glauca (Elasmobranchii: Carcharhiniformes).","authors":"Xiao Chen,&nbsp;Dan Xiang,&nbsp;Weiming Ai,&nbsp;Xiaofang Shi","doi":"10.3109/19401736.2013.825790","DOIUrl":"https://doi.org/10.3109/19401736.2013.825790","url":null,"abstract":"<p><p>In this study, we first presented the complete mitochondrial genome of the blue shark Prionace Glauca, a pelagic and oceanic species. It is 16,705 bp in length and contains 2 rRNA genes, 22 tRNA genes, 13 protein-coding genes and 1 putative control region. The overall base composition is 31.6% A, 24.4% C, 13.1% G and 30.9% T. Overlaps and short inter-genic spaces are located in the genome. The tRNA-Ser2 loses the dihydrouridine arm and cannot be folded into the typical clover-leaf secondary structure. Two start codons (GTG and ATG) with two stop codons (TAG and TAA) or with one incomplete stop codon (T) are found in the 13 protein-coding genes. The control region contains high A + T (69.9%) and low G (12.0%).</p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"313-4"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.825790","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31742510","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
The complete mitochondrial genome of Clarias fuscus (Teleostei, Siluriformes: Clariidae). 褐藻的完整线粒体基因组（Teleostei，志留目：Claridae）。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2014-01-27 DOI: 10.3109/19401736.2013.823177
Chuanjiang Zhou, Xuzhen Wang, Lihong Guan, Shunping He
{"title":"The complete mitochondrial genome of Clarias fuscus (Teleostei, Siluriformes: Clariidae).","authors":"Chuanjiang Zhou,&nbsp;Xuzhen Wang,&nbsp;Lihong Guan,&nbsp;Shunping He","doi":"10.3109/19401736.2013.823177","DOIUrl":"https://doi.org/10.3109/19401736.2013.823177","url":null,"abstract":"<p><p>The Clarias fuscus is an important economic fish in China and distributed widely in south China, e.g. Yangtze river, Pearl River, and Min River, even Hainan island. It is also distributed in Southeast Asia and Africa, so it is a good model for study population genetics and geological changes of these region. In this study, the complete mitochondrial genome sequence of C. fuscus has been obtained with PCR. The gene composition and arrangement of mitochondrial genome sequence of C. fuscus are similar to most of other vertebrates, which contains 13 protein-coding genes, 22 tRNA genes, 2 rRNA genes, and a non-coding control region with total length of 16,518 bp. Most of genes are encoded on Heavy-Strand (H-strand), except for eight tRNA and ND6 genes. Like most vertebrates, the bias of G and C has universality in different region (genes). The complete mitochondrial genome sequence of C. fuscus would contribute for better understanding of population genetics, conservation, biogeography, evolution of this species.</p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"270-1"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.823177","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32058529","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Single nucleotide polymorphisms in the mitochondrial displacement loop region modifies malignant melanoma: a study in Chinese Han population. 线粒体位移环区域的单核苷酸多态性改变了恶性黑色素瘤:中国汉族人群的研究。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2014-03-24 DOI: 10.3109/19401736.2014.900613
Wenjin Zhang, Wei Wang, Zhifeng Jia
{"title":"Single nucleotide polymorphisms in the mitochondrial displacement loop region modifies malignant melanoma: a study in Chinese Han population.","authors":"Wenjin Zhang,&nbsp;Wei Wang,&nbsp;Zhifeng Jia","doi":"10.3109/19401736.2014.900613","DOIUrl":"https://doi.org/10.3109/19401736.2014.900613","url":null,"abstract":"<p><p>Accumulation of single nucleotide polymorphisms (SNPs) in the displacement loop (D-loop) of mitochondrial DNA (mtDNA) may be associated with an increased cancer risk. We investigated the malignant melanoma (MM) risk profile of D-loop SNPs in a case-controlled study in Chinese Han population. A statistically significant increase in SNP frequency for the T16362C, A16399G and T195C alleles was observed in MM patients (p < 0.05) comparing the MM patients to controls, which indicted that the patients who carry these alleles were susceptible to MM. The study identified SNPs in the mitochondrial D-loop could increase MM risk in Chinese Han people. The analysis of genetic polymorphisms in the mitochondrial D-loop can help identify subgroups of patients who are at a higher risk of developing MM in Chinese Han population, thereby helping to make therapeutic decisions for these patients.</p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"205-7"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2014.900613","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32201940","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
Genetic divergence in wild population of endangered yellowtail catfish Pangasius pangasius (Hamilton-Buchanan, 1822) revealed by mtDNA. 濒危黄尾鲶鱼Pangasius Pangasius (Hamilton-Buchanan, 1822)野生种群遗传分化的mtDNA分析。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2014-01-10 DOI: 10.3109/19401736.2013.861455
Vindhya Mohindra, Rajeev K Singh, Rajesh Kumar, R S Sah, Kuldeep K Lal
{"title":"Genetic divergence in wild population of endangered yellowtail catfish Pangasius pangasius (Hamilton-Buchanan, 1822) revealed by mtDNA.","authors":"Vindhya Mohindra,&nbsp;Rajeev K Singh,&nbsp;Rajesh Kumar,&nbsp;R S Sah,&nbsp;Kuldeep K Lal","doi":"10.3109/19401736.2013.861455","DOIUrl":"https://doi.org/10.3109/19401736.2013.861455","url":null,"abstract":"Abstract Pangasius pangasius, an endangered freshwater fish species, is an important component of capture fishery from Indian rivers. Samples collected through commercial catches from three riverine populations were analyzed with cytb (307 bp) and ATPase6&8 (842 bp) regions for population variation and differentiation. The sequences of the both the mitochondrial regions revealed high haplotype and low nucleotide diversity. Shallow genetic diversity based on ATPase6&8 was observed, however its haplotypes network clearly indicated two distinct mitochondrial lineages. Mismatch distribution suggested population bottlenecks followed by expansion in Mahanadi population. The present study indicated the ATPase6&8 to be a potential mitochondrial marker for studying the population sub-structuring in the wild population of P. pangasius.","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"182-6"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.861455","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32018161","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Is mitochondrial tRNA Cys G5821A a deleterious mutation? 线粒体tRNA Cys G5821A是有害突变吗?
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2014-03-12 DOI: 10.3109/19401736.2014.892107
Lijuan Wei, Wengen Gao, Yafei Ma, Quanxing Cao, Xianfen Zhang
{"title":"Is mitochondrial tRNA Cys G5821A a deleterious mutation?","authors":"Lijuan Wei,&nbsp;Wengen Gao,&nbsp;Yafei Ma,&nbsp;Quanxing Cao,&nbsp;Xianfen Zhang","doi":"10.3109/19401736.2014.892107","DOIUrl":"https://doi.org/10.3109/19401736.2014.892107","url":null,"abstract":"<p><p>Although there are increasing reports showed a positive link between mitochondrial tRNACys G5821A mutation and mitochondrial diseases. However, its role remained controversial. In this paper, we took a comprehensive data analysis concerning this mutation and clinical diseases. Our data indicated that this mutation lacked an evolutionary conservation and did not get involved in the thermodynamic change of tRNACys gene. Therefore, based on these observations, we proposed that G5821A mutation is not deleterious mutation. </p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":" ","pages":"202-4"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2014.892107","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40300776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Primer effect in the detection of mtDNA heteroplasmy: insights from horse Cytochrome b gene. 引物效应在mtDNA异质性检测中的应用——来自马细胞色素b基因的启示。
Mitochondrial Dna Pub Date : 2015-04-01 Epub Date: 2014-01-10 DOI: 10.3109/19401736.2013.855924
Qianjun Zhao, Ye Kang, Yabin Pu, Lili Niu, Weijun Guan, Xiaohong He, Hongping Zhang, Hyuntae Lim, Yuehui Ma, Tao Zhong
{"title":"Primer effect in the detection of mtDNA heteroplasmy: insights from horse Cytochrome b gene.","authors":"Qianjun Zhao,&nbsp;Ye Kang,&nbsp;Yabin Pu,&nbsp;Lili Niu,&nbsp;Weijun Guan,&nbsp;Xiaohong He,&nbsp;Hongping Zhang,&nbsp;Hyuntae Lim,&nbsp;Yuehui Ma,&nbsp;Tao Zhong","doi":"10.3109/19401736.2013.855924","DOIUrl":"https://doi.org/10.3109/19401736.2013.855924","url":null,"abstract":"<p><p>Heteroplasmy, the presence of bi-allelic mtDNA types within an individual, has been previously detected in the D-loop region and Cytochrome b gene (Cytb) of mitochondrial DNA using PCR-RFLP. However, heteroplasmy was absent in thousands of equine mtDNA sequences deposited in GenBank. To address whether heteroplasmy widely exists in mitochondria of Chinese indigenous horses, we generated the data set of the target sites in Cytb region with Sanger sequencing and PCR-RFLP method as well. In this study, 23 heteroplasmic individuals were detected in 430 Chinese local horses. Both site and length heteroplasmy were identified in horse Cytb, especially in Xinihe and Ujumqin breeds. Our data provide evidence that the forward and reverse primers seem to produce a similar approximation to the proportion of mutation base call. However, locations of primers affected the proper detection of mtDNA heteroplasmy. The data obtained in this study highlight the importance of the primers in the accurate detection of heteroplasmy. </p>","PeriodicalId":49805,"journal":{"name":"Mitochondrial Dna","volume":"26 2","pages":"178-81"},"PeriodicalIF":0.0,"publicationDate":"2015-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.3109/19401736.2013.855924","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"32018173","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
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