Microbial Biotechnology最新文献

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Soil initial bacterial diversity and nutrient availability determine the rate of xenobiotic biodegradation 土壤初始细菌多样性和养分有效性决定了外来生物降解的速率
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-10-24 DOI: 10.1111/1751-7915.13946
Ramesha H. Jayaramaiah, Eleonora Egidi, Catriona A. Macdonald, Jun-Tao Wang, Thomas C. Jeffries, Mallavarapu Megharaj, Brajesh K. Singh
{"title":"Soil initial bacterial diversity and nutrient availability determine the rate of xenobiotic biodegradation","authors":"Ramesha H. Jayaramaiah,&nbsp;Eleonora Egidi,&nbsp;Catriona A. Macdonald,&nbsp;Jun-Tao Wang,&nbsp;Thomas C. Jeffries,&nbsp;Mallavarapu Megharaj,&nbsp;Brajesh K. Singh","doi":"10.1111/1751-7915.13946","DOIUrl":"https://doi.org/10.1111/1751-7915.13946","url":null,"abstract":"<p>Understanding the relative importance of soil microbial diversity, plants and nutrient management is crucial to implement an effective bioremediation approach to xenobiotics-contaminated soils. To date, knowledge on the interactive effects of soil microbiome, plant and nutrient supply on influencing biodegradation potential of soils remains limited. In this study, we evaluated the individual and interactive effects of soil initial bacterial diversity, nutrient amendments (organic and inorganic) and plant presence on the biodegradation rate of pyrene, a polycyclic aromatic hydrocarbon. Initial bacterial diversity had a strong positive impact on soil biodegradation potential, with soil harbouring higher bacterial diversity showing ~ 2 times higher degradation rates than soils with lower bacterial diversity. Both organic and inorganic nutrient amendments consistently improved the degradation rate in lower diversity soils and had negative (inorganic) to neutral (organic) effect in higher diversity soils. Interestingly, plant presence/type did not show any significant effect on the degradation rate in most of the treatments. Structural equation modelling demonstrated that initial bacterial diversity had a prominent role in driving pyrene biodegradation rates. We provide novel evidence that suggests that soil initial microbial diversity, and nutrient amendments should be explicitly considered in the design and employment of bioremediation management strategies for restoring natural habitats disturbed by organic pollutants.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 1","pages":"318-336"},"PeriodicalIF":5.7,"publicationDate":"2021-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1751-7915.13946","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"6028850","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Rapid preparation and antimicrobial activity of polyurea coatings with RE-Doped nano-ZnO re掺杂纳米zno聚脲涂料的快速制备及抗菌性能研究
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-10-22 DOI: 10.1111/1751-7915.13891
Yuanzhe Li, Yang Liu, Bingqing Yao, Srikanth Narasimalu, ZhiLi Dong
{"title":"Rapid preparation and antimicrobial activity of polyurea coatings with RE-Doped nano-ZnO","authors":"Yuanzhe Li,&nbsp;Yang Liu,&nbsp;Bingqing Yao,&nbsp;Srikanth Narasimalu,&nbsp;ZhiLi Dong","doi":"10.1111/1751-7915.13891","DOIUrl":"https://doi.org/10.1111/1751-7915.13891","url":null,"abstract":"<p>The recent COVID-19 virus has led to a rising interest in antimicrobial and antiviral coatings for frequently touched surfaces in public and healthcare settings. Such coatings may have the ability to kill a variety of microorganisms and bio-structures and reduce the risk of virus transmission. This paper proposes an extremely rapid method to introduce rare-earth doping nano-ZnO in polyamines for the preparation of the anti-microbial polyurea coatings. The nano-ZnO is prepared by wet chemical method, and the RE-doped nano-ZnO was obtained by mixing nano ZnO and RE-dopants with an appropriate amount of nitric acid. This rapidly fabricated polyurea coating can effectively reduce bacteria from enriching on the surface. Comparing with pure nano-ZnO group, all the polyurea coatings with four different rare-earth elements (La, Ce, Pr and Gd) doped nano-ZnO. The La-doped nano-ZnO formula group indicates the highest bactericidal rate over 85% to <i>Escherichia coli</i> (<i>E</i>. <i>coli)</i> and <i>Pseudomonas aeruginosa</i> (<i>Pseudomonas</i>). Followed by Ce/ZnO, the bactericidal rate may still remain as high as 83% at room temperature after 25-min UV-exposure. It is believed that the RE-doping process may greatly improve the photocatalytic response to UV light as well as environmental temperature due to its thermal catalytic enhancement. Through the surface characterizations and bioassays, the coatings have a durably high bactericidal rate even after repeated usage. As polyurea coating itself has high mechanical strength and adhesive force with most substrate materials without peel-off found, this rapid preparation method will also provide good prospects in practical applications.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 2","pages":"548-560"},"PeriodicalIF":5.7,"publicationDate":"2021-10-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1751-7915.13891","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5755466","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
Bacterial minicells to the rescue: cyto-Immunotherapy for the treatment of late stage cancers with minimal to no toxicity 细菌小细胞拯救:细胞免疫疗法治疗晚期癌症,毒性很小,甚至没有毒性
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-10-19 DOI: 10.1111/1751-7915.13952
Himanshu Brahmbhatt, Jennifer A. MacDiarmid
{"title":"Bacterial minicells to the rescue: cyto-Immunotherapy for the treatment of late stage cancers with minimal to no toxicity","authors":"Himanshu Brahmbhatt,&nbsp;Jennifer A. MacDiarmid","doi":"10.1111/1751-7915.13952","DOIUrl":"https://doi.org/10.1111/1751-7915.13952","url":null,"abstract":"&lt;p&gt;In the early 1900s, German chemist, Paul Ehrlich commenced developing drugs to treat infectious diseases and coined the term ‘chemotherapy’ defining it as the use of chemicals to treat disease. He developed the first alkylating agents, to treat cancer.&lt;/p&gt;&lt;p&gt;While some spectacular cures were observed with each of these approaches, most patients experienced tumour relapse and eventually succumbed to the disease. These advances provided an incremental advance in the treatment of cancer and almost all of them were associated with moderate to severe toxicity. Throughout this time, there was a major effort to discover antigens that were tumour-specific with a hope that tumour-targeted therapies could be developed with minimal toxicity to normal tissues. This effort has yet to bear fruit.&lt;/p&gt;&lt;p&gt;This issue focuses the mind on taking a step back and learning from history, getting to the roots of the problem and deciphering if there is a better way to address it so that we are able to pursue a more realistic path in the decade to come.&lt;/p&gt;&lt;p&gt;Interestingly, microbial cells may offer solutions to these seemingly insurmountable problems.&lt;/p&gt;&lt;p&gt;Given that most cancer cells elaborate a sophisticated plethora of drug resistance and immune-suppressive mechanisms, is there any way to overcome multi-drug resistance in cancer cells? Going after each different drug resistance mechanism or individual targets would again lead to hundreds of drugs with attendant toxicities and appropriate therapy would be impossible. Additionally, experience shows that targeting just one or two pathways can be easily overcome by tumour cells since they elaborate a multitude of different drug resistance pathways which can overcome single hits.&lt;/p&gt;&lt;p&gt;It is known for some time that there are cytotoxic drugs that can overcome multiple drug resistance mechanisms simply by virtue of the fact that these drugs are super-poisons. Examples include (i) PNU-159682, a metabolite of the anthracycline nemorubicin, a highly potent DNA topoisomerase I inhibitor which is over 2000-fold more toxic than conventional drug doxorubicin, (ii) Duocarmycin which is a DNA minor groove-binding alkylating agent, (iii) Maytansine, a benzoansamacrolide, a highly potent microtubule-targeted compound that induces mitotic arrest and kills tumour cells at sub-nanomolar concentrations etc. Unfortunately, these drugs cannot be administered in patients as free chemotherapy since they are too toxic and would kill a person due to rapid and widespread killing of normal cells. These drugs are being developed as antibody-drug conjugates but even then, they are seriously toxic in patients.&lt;/p&gt;&lt;p&gt;If it were possible to safely administer these drugs into cancer patients so that the drug is specifically taken up inside cancer cells and not normal cells, then it should be possible to kill even the most drug-resistant cancer cells. Bacterial minicells which are anucleate nanoparticles produced as a result of inactivating the genes","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 1","pages":"91-94"},"PeriodicalIF":5.7,"publicationDate":"2021-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1751-7915.13952","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5734276","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
SEVAtile: a standardised DNA assembly method optimised for Pseudomonas seatile:一种针对假单胞菌优化的标准化DNA组装方法
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-10-14 DOI: 10.1111/1751-7915.13922
Eveline-Marie Lammens, Maarten Boon, Dennis Grimon, Yves Briers, Rob Lavigne
{"title":"SEVAtile: a standardised DNA assembly method optimised for Pseudomonas","authors":"Eveline-Marie Lammens,&nbsp;Maarten Boon,&nbsp;Dennis Grimon,&nbsp;Yves Briers,&nbsp;Rob Lavigne","doi":"10.1111/1751-7915.13922","DOIUrl":"https://doi.org/10.1111/1751-7915.13922","url":null,"abstract":"<p>To meet the needs of synthetic biologists, DNA assembly methods have transformed from simple ‘cut-and-paste’ procedures to highly advanced, standardised assembly techniques. Implementing these standardised DNA assembly methods in biotechnological research conducted in non-model hosts, including <i>Pseudomonas putida</i> and <i>Pseudomonas aeruginosa</i>, could greatly benefit reproducibility and predictability of experimental results. SEVAtile is a Type IIs-based assembly approach, which enables the rapid and standardised assembly of genetic parts – or tiles – to create genetic circuits in the established SEVA-vector backbone. Contrary to existing DNA assembly methods, SEVAtile is an easy and straightforward method, which is compatible with any vector, both SEVA- and non-SEVA. To prove the efficiency of the SEVAtile method, a three-vector system was successfully generated to independently co-express three different proteins in <i>P. putida</i> and <i>P. aeruginosa</i>. More specifically, one of the vectors, pBGDes, enables genomic integration of assembled circuits in the Tn7 landing site, while self-replicatory vectors pSTDesX and pSTDesR enable inducible expression from the XylS/<i>Pm</i> and RhaRS/<i>PrhaB</i> expression systems, respectively. Together, we hope these vector systems will support research in both the microbial SynBio and <i>Pseudomonas</i> field.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 1","pages":"370-386"},"PeriodicalIF":5.7,"publicationDate":"2021-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1751-7915.13922","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"6238369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Antimicrobial resistance: progress and challenges in antibiotic discovery and anti-infective therapy 抗菌素耐药性:抗生素发现和抗感染治疗的进展和挑战
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-10-05 DOI: 10.1111/1751-7915.13945
Tino Krell, Miguel A. Matilla
{"title":"Antimicrobial resistance: progress and challenges in antibiotic discovery and anti-infective therapy","authors":"Tino Krell,&nbsp;Miguel A. Matilla","doi":"10.1111/1751-7915.13945","DOIUrl":"https://doi.org/10.1111/1751-7915.13945","url":null,"abstract":"<p>The alarming rise in the emergence of antimicrobial resistance in human, animal and plant pathogens is challenging global health and food production. Traditional strategies used for antibiotic discovery persistently result in the re-isolation of known compounds, calling for the need to develop more rational strategies to identify new antibiotics. Additionally, anti-infective therapy approaches targeting bacterial signalling pathways related to virulence is emerging as an alternative to the use of antibiotics. In this perspective article, we critically analyse approaches aimed at revitalizing the identification of new antibiotics and to advance antivirulence therapies. The development of high-throughput <i>in vivo</i>, <i>in vitro</i> and <i>in silico</i> platforms, together with the progress in chemical synthesis, analytical chemistry and structural biology, are reviving a research area that is of tremendous relevance for global health.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 1","pages":"70-78"},"PeriodicalIF":5.7,"publicationDate":"2021-10-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1751-7915.13945","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"6094987","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 15
In vivo, in vitro and in silico: an open space for the development of microbe-based applications of synthetic biology 体内,体外和硅:一个开放的空间,为开发微生物为基础的应用合成生物学
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-09-27 DOI: 10.1111/1751-7915.13937
Antoine Danchin
{"title":"In vivo, in vitro and in silico: an open space for the development of microbe-based applications of synthetic biology","authors":"Antoine Danchin","doi":"10.1111/1751-7915.13937","DOIUrl":"https://doi.org/10.1111/1751-7915.13937","url":null,"abstract":"<p>Living systems are studied using three complementary approaches: living cells, cell-free systems and computer-mediated modelling. Progresses in understanding, allowing researchers to create novel chassis and industrial processes rest on a cycle that combines <i>in vivo</i>, <i>in vitro</i> and <i>in silico</i> studies. This design–build–test–learn iteration loop cycle between experiments and analyses combines together physiology, genetics, biochemistry and bioinformatics in a way that keeps going forward. Because computer-aided approaches are not directly constrained by the material nature of the entities of interest, we illustrate here how this virtuous cycle allows researchers to explore chemistry which is foreign to that present in extant life, from whole chassis to novel metabolic cycles. Particular emphasis is placed on the importance of evolution.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 1","pages":"42-64"},"PeriodicalIF":5.7,"publicationDate":"2021-09-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1751-7915.13937","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"6076578","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Web Alert: Amino acids from microbes for biotechnology 网络警告:用于生物技术的微生物氨基酸
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-09-18 DOI: 10.1111/1751-7915.13923
Lawrence P. Wackett
{"title":"Web Alert: Amino acids from microbes for biotechnology","authors":"Lawrence P. Wackett","doi":"10.1111/1751-7915.13923","DOIUrl":"https://doi.org/10.1111/1751-7915.13923","url":null,"abstract":"Amino acids have traditionally been derived on scale via microbes that overproduce specific amino acids that they excrete into fermentation broths. This paper describes the potential to use biomass and specific catalysts to produce a number of a-amino acids. If scalable and economically feasible, these methods could compete with the current microbial fermentation processes used in industry. Microbial Biotechnology (2021) 14(5), 2241–2242 doi:10.1111/1751-7915.13923","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"14 5","pages":"2241-2242"},"PeriodicalIF":5.7,"publicationDate":"2021-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sfamjournals.onlinelibrary.wiley.com/doi/epdf/10.1111/1751-7915.13923","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5696680","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of essential β-oxidation genes and corresponding metabolites for oestrogen degradation by actinobacteria 放线菌降解雌激素必需β-氧化基因及其代谢产物的鉴定
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-09-15 DOI: 10.1111/1751-7915.13921
Tsun-Hsien Hsiao, Tzong-Huei Lee, Meng-Rong Chuang, Po-Hsiang Wang, Menghsiao Meng, Masae Horinouchi, Toshiaki Hayashi, Yi-Lung Chen, Yin-Ru Chiang
{"title":"Identification of essential β-oxidation genes and corresponding metabolites for oestrogen degradation by actinobacteria","authors":"Tsun-Hsien Hsiao,&nbsp;Tzong-Huei Lee,&nbsp;Meng-Rong Chuang,&nbsp;Po-Hsiang Wang,&nbsp;Menghsiao Meng,&nbsp;Masae Horinouchi,&nbsp;Toshiaki Hayashi,&nbsp;Yi-Lung Chen,&nbsp;Yin-Ru Chiang","doi":"10.1111/1751-7915.13921","DOIUrl":"https://doi.org/10.1111/1751-7915.13921","url":null,"abstract":"<p>Steroidal oestrogens (C<sub>18</sub>) are contaminants receiving increasing attention due to their endocrine-disrupting activities at sub-nanomolar concentrations. Although oestrogens can be eliminated through photodegradation, microbial function is critical for removing oestrogens from ecosystems devoid of sunlight exposure including activated sludge, soils and aquatic sediments. Actinobacteria were found to be key oestrogen degraders in manure-contaminated soils and estuarine sediments. Previously, we used the actinobacterium <i>Rhodococcus</i> sp. strain B50 as a model microorganism to identify two oxygenase genes, <i>aedA</i> and <i>aedB</i>, involved in the activation and subsequent cleavage of the estrogenic A-ring respectively. However, genes responsible for the downstream degradation of oestrogen A/B-rings remained completely unknown. In this study, we employed tiered comparative transcriptomics, gene disruption experiments and mass spectrometry-based metabolite profile analysis to identify oestrogen catabolic genes. We observed the up-regulation of thiolase-encoding <i>aedF</i> and <i>aedK</i> in the transcriptome of strain B50 grown with oestrone. Consistently, two downstream oestrogenic metabolites, 5-oxo-4-norestrogenic acid (C<sub>17</sub>) and 2,3,4-trinorestrogenic acid (C<sub>15</sub>), were accumulated in <i>aedF-</i> and <i>aedK</i>-disrupted strain B50 cultures. Disruption of <i>fadD3</i> [3aα-H-4α(3'-propanoate)-7aβ-methylhexahydro-1,5-indanedione (HIP)-coenzyme A-ligase gene] in strain B50 resulted in apparent HIP accumulation in oestrone-fed cultures, indicating the essential role of <i>fadD3</i> in actinobacterial oestrogen degradation. In addition, we detected a unique <i>meta</i>-cleavage product, 4,5-<i>seco</i>-estrogenic acid (C<sub>18</sub>), during actinobacterial oestrogen degradation. Differentiating the oestrogenic metabolite profile and degradation genes of actinobacteria and proteobacteria enables the cost-effective and time-saving identification of potential oestrogen degraders in various ecosystems through liquid chromatography–mass spectrometry analysis and polymerase chain reaction-based functional assays.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 3","pages":"949-966"},"PeriodicalIF":5.7,"publicationDate":"2021-09-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1111/1751-7915.13921","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5677613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Auxin-mediated induction of GAL promoters by conditional degradation of Mig1p improves sesquiterpene production in Saccharomyces cerevisiae with engineered acetyl-CoA synthesis 生长素介导的Mig1p有条件降解诱导GAL启动子通过工程乙酰辅酶a合成提高酿酒酵母倍半萜的产量
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-09-09 DOI: 10.1111/1751-7915.13880
Irfan Farabi Hayat, Manuel Plan, Birgitta E. Ebert, Geoff Dumsday, Claudia E. Vickers, Bingyin Peng
{"title":"Auxin-mediated induction of GAL promoters by conditional degradation of Mig1p improves sesquiterpene production in Saccharomyces cerevisiae with engineered acetyl-CoA synthesis","authors":"Irfan Farabi Hayat,&nbsp;Manuel Plan,&nbsp;Birgitta E. Ebert,&nbsp;Geoff Dumsday,&nbsp;Claudia E. Vickers,&nbsp;Bingyin Peng","doi":"10.1111/1751-7915.13880","DOIUrl":"https://doi.org/10.1111/1751-7915.13880","url":null,"abstract":"<p>The yeast <i>Saccharomyces cerevisiae</i> uses the pyruvate dehydrogenase-bypass for acetyl-CoA biosynthesis. This relatively inefficient pathway limits production potential for acetyl-CoA-derived biochemical due to carbon loss and the cost of two high-energy phosphate bonds per molecule of acetyl-CoA. Here, we attempted to improve acetyl-CoA production efficiency by introducing heterologous acetylating aldehyde dehydrogenase and phosphoketolase pathways for acetyl-CoA synthesis to enhance production of the sesquiterpene <i>trans</i>-nerolidol. In addition, we introduced auxin-mediated degradation of the glucose-dependent repressor Mig1p to allow induced expression of <i>GAL</i> promoters on glucose so that production potential on glucose could be examined. The novel genes that we used to reconstruct the heterologous acetyl-CoA pathways did not sufficiently complement the loss of endogenous acetyl-CoA pathways, indicating that superior heterologous enzymes are necessary to establish fully functional synthetic acetyl-CoA pathways and properly explore their potential for nerolidol synthesis. Notwithstanding this, nerolidol production was improved twofold to a titre of ˜ 900 mg l<sup>−1</sup> in flask cultivation using a combination of heterologous acetyl-CoA pathways and Mig1p degradation. Conditional Mig1p depletion is presented as a valuable strategy to improve the productivities in the strains engineered with <i>GAL</i> promoters-controlled pathways when growing on glucose.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"14 6","pages":"2627-2642"},"PeriodicalIF":5.7,"publicationDate":"2021-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1111/1751-7915.13880","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5783054","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
A polyhydroxyalkanoates bioprocess improvement case study based on four fed-batch feeding strategies 基于四种分批投料策略的聚羟基烷酸酯生物工艺改进案例研究
IF 5.7 2区 生物学
Microbial Biotechnology Pub Date : 2021-09-09 DOI: 10.1111/1751-7915.13879
Maciej W. Guzik, Gearóid F. Duane, Shane T. Kenny, Eoin Casey, Pawe? Mielcarek, Magdalena Wojnarowska, Kevin E. O’Connor
{"title":"A polyhydroxyalkanoates bioprocess improvement case study based on four fed-batch feeding strategies","authors":"Maciej W. Guzik,&nbsp;Gearóid F. Duane,&nbsp;Shane T. Kenny,&nbsp;Eoin Casey,&nbsp;Pawe? Mielcarek,&nbsp;Magdalena Wojnarowska,&nbsp;Kevin E. O’Connor","doi":"10.1111/1751-7915.13879","DOIUrl":"https://doi.org/10.1111/1751-7915.13879","url":null,"abstract":"<p>The modelling and optimization of a process for the production of the medium chain length polyhydroxyalkanoate (mcl-PHA) by the bacterium <i>Pseudomonas putida</i> KT2440 when fed a synthetic fatty acid mixture (SFAM) was investigated. Four novel feeding strategies were developed and tested using a constructed model and the optimum one implemented in further experiments. This strategy yielded a cell dry weight of 70.6 g l<sup>−1</sup> in 25 h containing 38% PHA using SFAM at 5 l scale. A phosphate starvation strategy was implemented to improve PHA content, and this yielded 94.1 g l<sup>−1</sup> in 25 h containing 56% PHA using SFAM at 5 l scale. The process was successfully operated at 20 l resulting in a cell dry weight of 91.2 g l<sup>−1</sup> containing 65% PHA at the end of a 25-h incubation.</p>","PeriodicalId":49145,"journal":{"name":"Microbial Biotechnology","volume":"15 3","pages":"996-1006"},"PeriodicalIF":5.7,"publicationDate":"2021-09-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1111/1751-7915.13879","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"5783049","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
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