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Prevalence of icaADBC genes, and correlation with biofilms and antibiotic resistance in S. aureus: a systematic review and meta-analysis. 金黄色葡萄球菌中icaADBC基因的流行及其与生物膜和抗生素耐药性的相关性:系统综述和荟萃分析
IF 1.7
GERMS Pub Date : 2024-12-31 eCollection Date: 2024-12-01 DOI: 10.18683/germs.2024.1448
Khadijeh Bamneshin, Mohsen Poudineh, Roya Haji Alibabaei, Mohammad Reza Jabbari Amiri, Zahra Sadat Fateminasab, Zahra Ghorbani, Reyhaneh Maleki, Azad Khaledi
{"title":"Prevalence of <i>icaADBC</i> genes, and correlation with biofilms and antibiotic resistance in <i>S. aureus</i>: a systematic review and meta-analysis.","authors":"Khadijeh Bamneshin, Mohsen Poudineh, Roya Haji Alibabaei, Mohammad Reza Jabbari Amiri, Zahra Sadat Fateminasab, Zahra Ghorbani, Reyhaneh Maleki, Azad Khaledi","doi":"10.18683/germs.2024.1448","DOIUrl":"https://doi.org/10.18683/germs.2024.1448","url":null,"abstract":"<p><p>We evaluated the gene prevalence of the <i>icaADBC</i> operon, its correlation with biofilm formation and antibiotic resistance through a global meta-analysis. We searched for articles that reported the prevalence of <i>icaADBC</i> operon, biofilm, and antibiotic resistance in <i>S. aureus</i> from 2000 up to 1<sup>st</sup> March 2024. The search was done in scientific databases such as PubMed, Scopus, Google Scholar, EMBASE, and Web of Science. The MESH keywords were: <i>icaADBC</i> operon, biofilm, methicillin-resistant <i>Staphylococcus aureus</i>, antibiotic resistance. Comprehensive Meta-Analysis Software was used for data analysis. The estimation of the combined prevalence of each desired variable was performed by depicting a forest plot through the random-effects model with a 95% confidence interval. Data heterogeneity was estimated by Q and I<sup>2</sup> indices, and p-value <0.05 was reflected as statistically significant heterogeneity. Fifteen articles were eligible for inclusion. The prevalence of <i>ica</i> operon genes varied between 28-51.5%. The prevalence of total <i>ica</i> operon genes in <i>S. aureus</i> was reported at 42.4% (95%CI: 29.4-56.5). Biofilm formation prevalence of <i>S. aureus</i> isolates in different studies was reported between 10-100%. The rate of total biofilm in <i>S. aureus</i> was 95.8%. The rate of total strong, moderate, and weak biofilm in <i>S. aureus</i> was reported at 35.4%, 35.3%, and 23.9%, respectively. Most reviewed studies reported a correlation between <i>ica</i> genes and biofilm. We found that many studies reported a correlation between the high prevalence of <i>ica</i> operon genes, phenotypic biofilm production, and antibiotic resistance. Also, regardless of whether the strains were MRSA or not, the high biofilm formation ability was reported at 95.8% by most studies.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 4","pages":"387-401"},"PeriodicalIF":1.7,"publicationDate":"2024-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12013665/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144057358","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Updates in viral hepatitis in 2024 - summary of education, research and leadership activities of the ESCMID Study Group for Viral Hepatitis (ESGVH). 2024年病毒性肝炎的最新进展——ESCMID病毒性肝炎研究组(ESGVH)的教育、研究和领导活动摘要
IF 1.7
GERMS Pub Date : 2024-12-31 eCollection Date: 2024-12-01 DOI: 10.18683/germs.2024.1442
Oana Săndulescu, İmran Hasanoğlu, Mojca Matičič
{"title":"Updates in viral hepatitis in 2024 - summary of education, research and leadership activities of the ESCMID Study Group for Viral Hepatitis (ESGVH).","authors":"Oana Săndulescu, İmran Hasanoğlu, Mojca Matičič","doi":"10.18683/germs.2024.1442","DOIUrl":"https://doi.org/10.18683/germs.2024.1442","url":null,"abstract":"","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 4","pages":"320-321"},"PeriodicalIF":1.7,"publicationDate":"2024-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12013663/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144019531","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Isolation of Shiga toxin-producing Escherichia coli O157 and non-O157 from retail imported frozen beef marketed in Saudi Arabia using immunomagnetic separation and multiplex PCR. 利用免疫磁分离和多重PCR技术从沙特阿拉伯销售的零售进口冷冻牛肉中分离出产志贺毒素的大肠杆菌O157和非O157。
IF 1.7
GERMS Pub Date : 2024-12-31 eCollection Date: 2024-12-01 DOI: 10.18683/germs.2024.1445
Ahlam Almulhim, Amer Alomar, Ibrahim Alhabib, Lamya Zohair Yamani, Nasreldin Elhadi
{"title":"Isolation of Shiga toxin-producing <i>Escherichia coli</i> O157 and non-O157 from retail imported frozen beef marketed in Saudi Arabia using immunomagnetic separation and multiplex PCR.","authors":"Ahlam Almulhim, Amer Alomar, Ibrahim Alhabib, Lamya Zohair Yamani, Nasreldin Elhadi","doi":"10.18683/germs.2024.1445","DOIUrl":"https://doi.org/10.18683/germs.2024.1445","url":null,"abstract":"<p><strong>Introduction: </strong>Shiga toxin-producing <i>Escherichia coli</i> (STEC), particularly <i>E. coli</i> O157:H7, is a major contributor to foodborne outbreaks globally. Both <i>E. coli</i> O157 and non-O157 strains can lead to severe health issues, including hemolytic colitis and hemolytic uremic syndrome, which can result in kidney failure.</p><p><strong>Methods: </strong>Two hundred and one frozen beef samples were purchased from various supermarkets located in the Eastern Province of Saudi Arabia and subsequently enriched in tryptic soy broth (TSB). From the enriched samples in TSB, 1 mL portion was mixed with immunomagnetic beads (IMB) coated with specific antibodies targeting the <i>E. coli</i> O157 O antigen. The beads, which contained the captured bacteria, were then streaked onto CHROMagar O157 and Sorbitol MacConkey (SMAC) agar. The DNA extracted from these samples was examined using multiplex PCR to identify potential virulence gene markers, specifically <i>stx</i>-1, <i>stx</i>-2, and <i>eae</i>.</p><p><strong>Results: </strong>Of the 201 examined samples, 88 (43.8%) and 106 (52.7%) were positive for <i>E. coli</i> and produced colorless and mauve colonies on SMAC agar and CHROMagar O157, respectively. Out of 298 isolates in total, 174 isolates of <i>E. coli</i> were isolated with IMB enrichment. The highest detection rate of virulence gene markers was found among isolates that had been isolated using IMB enrichment, where 25 (8.4%), 2 (0.7%) and 12 (4%) isolates tested positive for <i>stx</i>1, <i>stx</i>2, and <i>eae</i> genes respectively. Among 42 isolates harboring potential virulence gene markers, 11 isolates were identified as <i>E. coli</i> O157 (<i>stx</i> <sub>1</sub> <sup>+</sup>/<i>eae</i> <sup>+</sup> or <i>stx</i> <sub>2</sub> <sup>+</sup>/<i>eae</i> <sup>+</sup>). ERIC-PCR genotyping was able to determine the genetic relatedness among 42 isolates of <i>E. coli</i> O157 and <i>E. coli</i> non-O157 into 10 types with four identical related clusters and a genetic similarity rate above 90% homology from the identified isolates.</p><p><strong>Conclusions: </strong>The present study gives a clear perspective on STEC contamination in imported frozen beef marketed in Saudi Arabia. Because of the many possibilities of STEC contamination in imported frozen beef, further studies on the spread of STEC at various levels of imported frozen meat are needed on a long-term basis.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 4","pages":"352-361"},"PeriodicalIF":1.7,"publicationDate":"2024-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12013668/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144001137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparison of microbial preservation methods: a narrative review. 微生物保存方法的比较:述评。
IF 1.7
GERMS Pub Date : 2024-12-31 eCollection Date: 2024-12-01 DOI: 10.18683/germs.2024.1447
Wijesundara Mudiyanselage Thilini Nimansala Senaratne, Jayaweera Arachchige Asela Sampath Jayaweera
{"title":"Comparison of microbial preservation methods: a narrative review.","authors":"Wijesundara Mudiyanselage Thilini Nimansala Senaratne, Jayaweera Arachchige Asela Sampath Jayaweera","doi":"10.18683/germs.2024.1447","DOIUrl":"https://doi.org/10.18683/germs.2024.1447","url":null,"abstract":"<p><p>Many microorganisms are used to produce antibiotics, vaccines, and medicines for various diseases, and preserving these microorganisms and viruses can ensure that the development process is streamlined. We have reviewed the short-term and long-term microbial and viral preservation methods including novel and emerging technologies. Short-term preservation methods of microorganisms are designed to maintain the viability of the organisms for periods ranging from a few days up to one year. The novel microfluid systems allow for the creation of microenvironments that support the growth and proliferation of specific microorganisms and the isolation of individual cells or small populations of microorganisms for studying microbial behavior and interactions. Long-term preservation involves storing the organisms for an extended period, ranging from months to decades, while retaining their viability and genetic stability. The mineral oil or liquid paraffin storage, storage in distilled water, storage in sterile soil, lyophilization, and cryopreservation are well known, and encapsulation of nanoparticles to preserve microorganisms, electrospinning, and electro spraying and supercooling are novel and emerging methods. Each short and long-term microbial and viral preservation method has advantages and disadvantages, and, based on the requirement, the appropriate method can be chosen.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 4","pages":"375-386"},"PeriodicalIF":1.7,"publicationDate":"2024-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12013664/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143988731","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative phenotypic and proteomic analysis of colistin-exposed Pseudomonas aeruginosa. 暴露于粘菌素的铜绿假单胞菌的比较表型和蛋白质组学分析。
IF 1.7
GERMS Pub Date : 2024-09-30 eCollection Date: 2024-09-01 DOI: 10.18683/germs.2024.1436
Nguyen Bao Vy Tran, Thuc Quyen Huynh, Hong Loan Ngo, Ngoc Hoa Binh Nguyen, Thi Hiep Nguyen, Thi Hang Tong, Thi Truc Ly Trinh, Van Dung Nguyen, Le Nhat Minh Pham, Prem Prakash Das, Teck Kwang Lim, Qingsong Lin, Thi Thu Hoai Nguyen
{"title":"Comparative phenotypic and proteomic analysis of colistin-exposed <i>Pseudomonas</i> <i>aeruginosa</i>.","authors":"Nguyen Bao Vy Tran, Thuc Quyen Huynh, Hong Loan Ngo, Ngoc Hoa Binh Nguyen, Thi Hiep Nguyen, Thi Hang Tong, Thi Truc Ly Trinh, Van Dung Nguyen, Le Nhat Minh Pham, Prem Prakash Das, Teck Kwang Lim, Qingsong Lin, Thi Thu Hoai Nguyen","doi":"10.18683/germs.2024.1436","DOIUrl":"https://doi.org/10.18683/germs.2024.1436","url":null,"abstract":"<p><strong>Introduction: </strong>The emergence of colistin resistance threatens the treatment of <i>Pseudomonas aeruginosa</i> infections.</p><p><strong>Methods: </strong>In this study, in vitro development of colistin resistance was investigated using comparative phenotypic and proteomic analysis of <i>P. aeruginosa</i> ATCC 9027, its 14-day colistin sub-MIC exposed strain (Col-E1), and 10-day antibiotic-free cultured Col-E1 strain (Col-E2). Antibiotic susceptibility, morphology, virulence factors, and proteomic changes were assessed using disc-diffusion, agar-based, spectrophotometry, SEM, and iTRAQ-LC-MS/MS methods.</p><p><strong>Results: </strong>Colistin-exposed strains decreased susceptibility to colistin while remaining susceptible to other antibiotics. Col-E1 reduced the cell lengths by 17.67% and the colony size by 36.16% compared to the initial strain. The reduction remained in Col-E2. The pyocyanin production was reduced in Col-E1 (p=0.025, Tukey HSD) and increased again in Col-E2 (p=0.005, Tukey HSD). In contrast, no significant changes in elastase, protease, rhamnolipid, pyoverdine, and biofilm production were observed (p>0.05, Tukey HSD). In Col-E1, the proteome analysis showed 135 differentially expressed proteins (DEPs) of which 94 DEPs (69.23%) maintained their expression change in Col-E2. Among DEPs, 82 were involved in metabolism and protein synthesis. Some DEPs (6/135) played a role in stress response such as GrpE (fold change: 14.93) and Hmp (fold change: 12.08). In particular, membrane proteins like OprD, DdlB, and OprI showed significant colistin response with fold change of -8.47, 6.43 and 6.19, respectively.</p><p><strong>Conclusions: </strong>In summary, colistin response in <i>P. aeruginosa</i> seemed to affect morphology, production of pyocyanin, and proteins of metabolism, protein synthesis, stress response and membrane.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 3","pages":"246-266"},"PeriodicalIF":1.7,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703588/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142956470","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Varicella zoster virus central nervous system infection - a retrospective study from a tertiary center in Greece. 水痘带状疱疹病毒中枢神经系统感染——来自希腊某三级中心的回顾性研究。
IF 1.7
GERMS Pub Date : 2024-09-30 eCollection Date: 2024-09-01 DOI: 10.18683/germs.2024.1437
Konstantinos Alexakis, Petros Ioannou, George Sourvinos, Diamantis P Kofteridis
{"title":"Varicella zoster virus central nervous system infection - a retrospective study from a tertiary center in Greece.","authors":"Konstantinos Alexakis, Petros Ioannou, George Sourvinos, Diamantis P Kofteridis","doi":"10.18683/germs.2024.1437","DOIUrl":"https://doi.org/10.18683/germs.2024.1437","url":null,"abstract":"<p><strong>Introduction: </strong>Central nervous system (CNS) infection due to the varicella zoster virus (VZV) can complicate the primary infection or the reactivation, leading to significant mortality and morbidity. This study aimed to describe the clinical, laboratory, and radiological characteristics of patients with confirmed VZV CNS infection in a tertiary hospital in Greece.</p><p><strong>Methods: </strong>Data about patients hospitalized from January 2018 to September 2023 with CNS infection by VZV, confirmed by a syndromic polymerase chain reaction in the cerebrospinal fluid (CSF), were retrospectively collected and evaluated.</p><p><strong>Results: </strong>In total, 14 patients were recorded. The median age was 49 years, and 35.7% were male. Headache was present in 71.4%, a rash in 57.1%, and fevers, nausea or vomiting, and disorientation in 35.7%. The CSF showed lymphocytic pleocytosis in all patients. Brain magnetic resonance imaging was performed in 53.8%. Empirical antivirals were given in 69.2%, and intravenous acyclovir was given to all patients after identification of VZV in the CSF. Only 7.1% (1 patient) required intensive care unit admission, and 7.1% (1 patient) died. Patients presenting without a rash may be slightly younger, have a slightly lower Charlson comorbidity index, be more likely to present with photophobia or phonophobia, and have lower serum CRP.</p><p><strong>Conclusions: </strong>Patients presenting with VZV CNS infection have lymphocytic pleocytosis in the CSF and usually have a favorable outcome with antiviral treatment. Those presenting without a rash may have a different overall clinical phenotype from those with a rash; however, this must be evaluated in larger studies in the future.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 3","pages":"267-276"},"PeriodicalIF":1.7,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703585/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142956489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigation of risk factors for household-based dengue virus infection in Borobudur Subdistrict, Magelang, Indonesia. 印度尼西亚马格朗婆罗浮屠街道家庭登革热病毒感染危险因素调查。
IF 1.7
GERMS Pub Date : 2024-09-30 eCollection Date: 2024-09-01 DOI: 10.18683/germs.2024.1438
Naufal Arif Ismail, Jamaluddin Haikhah, Evania Tasnim Fauziah, Muhammad Adam Prabasunu, Fadila Husnia Rahma, Siswanto Siswanto, Vita Widyasari
{"title":"Investigation of risk factors for household-based dengue virus infection in Borobudur Subdistrict, Magelang, Indonesia.","authors":"Naufal Arif Ismail, Jamaluddin Haikhah, Evania Tasnim Fauziah, Muhammad Adam Prabasunu, Fadila Husnia Rahma, Siswanto Siswanto, Vita Widyasari","doi":"10.18683/germs.2024.1438","DOIUrl":"https://doi.org/10.18683/germs.2024.1438","url":null,"abstract":"<p><strong>Introduction: </strong>Dengue infection poses a serious threat to global public health, including Indonesia. The rapid spread and significant economic impact are crucial concerns for control efforts. Investigating risk factors of dengue virus infection is necessary to formulate effective strategies, particularly at the household level. This study aims to investigate contributing risk factors to dengue virus transmission in the Borobudur Subdistrict, Magelang, Indonesia, an area with persistently high dengue infection mortality rates.</p><p><strong>Methods: </strong>This study adopted a case-control design and utilized secondary data collected from six villages in the Borobudur Subdistrict. A total of 111 households (37 cases and 74 controls) participated in the study and completed a questionnaire encompassing: 1) Sociodemographic data; 2) Healthy housing components; 3) Sanitation and behavioral components; and 4) Dengue infection prevention practices. Data were analyzed bivariately using statistical software to identify differences in group proportions.</p><p><strong>Results: </strong>The findings of this study indicate that the presence of stagnant water (odds ratio [OR]: 5.02) and mosquito larvae (OR: 4.80) around the house, morning sleep habits (OR: 6.97), and lack of participation in anti-dengue programs (OR: 3.23) are significant risk factors (p<0.05) for dengue infection. However, no significant differences (p>0.05) were found in healthy housing components between the case and control groups.</p><p><strong>Conclusions: </strong>This study has identified contributing risk factors to dengue virus transmission in the Borobudur Subdistrict. These results can serve as a foundation for designing more effective intervention programs for dengue infection and future prevention efforts.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 3","pages":"277-286"},"PeriodicalIF":1.7,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703583/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142956476","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesizing and assessing influenza vaccine evidence: Strengths and limitations of the recent ECDC report on the effectiveness of new and enhanced influenza vaccines. Communication on: the "European Centre for Disease Prevention and Control. Systematic review update on the efficacy, effectiveness and safety of newer and enhanced seasonal influenza vaccines for the prevention of laboratory confirmed influenza in individuals aged 18 years and over. Stockholm: ECDC; 2024". 综合和评估流感疫苗证据:最近ECDC关于新型和增强型流感疫苗有效性报告的优势和局限性。来文:“欧洲疾病预防和控制中心”。关于用于预防18岁及以上人群实验室确诊流感的新型和增强型季节性流感疫苗的功效、有效性和安全性的系统评价最新情况。斯德哥尔摩:ECDC;2024”。
IF 1.7
GERMS Pub Date : 2024-09-30 eCollection Date: 2024-09-01 DOI: 10.18683/germs.2024.1441
George Kassianos, Rok Civljak, Gerrit Adrianus van Essen, Oana Falup Pecurariu, Filipe Froes, Andrey Galev, Kadri Kõivumägi, Zuzana Kristufkova, Ernest Kuchar, Jan Kyncl, Helena C Maltezou, Miloš Marković, Anne Mosnier, Raúl Ortiz de Lejarazu Y Leonardo, Alessandro Rossi, Jörg Schelling
{"title":"Synthesizing and assessing influenza vaccine evidence: Strengths and limitations of the recent ECDC report on the effectiveness of new and enhanced influenza vaccines. Communication on: the \"European Centre for Disease Prevention and Control. Systematic review update on the efficacy, effectiveness and safety of newer and enhanced seasonal influenza vaccines for the prevention of laboratory confirmed influenza in individuals aged 18 years and over. Stockholm: ECDC; 2024\".","authors":"George Kassianos, Rok Civljak, Gerrit Adrianus van Essen, Oana Falup Pecurariu, Filipe Froes, Andrey Galev, Kadri Kõivumägi, Zuzana Kristufkova, Ernest Kuchar, Jan Kyncl, Helena C Maltezou, Miloš Marković, Anne Mosnier, Raúl Ortiz de Lejarazu Y Leonardo, Alessandro Rossi, Jörg Schelling","doi":"10.18683/germs.2024.1441","DOIUrl":"https://doi.org/10.18683/germs.2024.1441","url":null,"abstract":"<p><p>High quality research is critical for evidence-based decision making in public health and fundamental to maintain progress and trust in immunization programs in Europe. In 2024 the European Centre for Disease Prevention and Control (ECDC) conducted an update of the 2020 systematic review to capture more recent evidence on of the efficacy, effectiveness of influenza vaccines in individuals aged 18 years and older in the prevention of laboratory-confirmed influenza. While this report was highly anticipated due to the strength of the protocol and processes put in place, during our assessment, we expressed two chief concerns. We are concerned by the grading of the evidence certainty applied and being unable to reproduce some data extracted in the report from the primary sources. While the systematic review benefited of strong methods and processes, the execution of the research protocol warrants revision due to the issues discussed. We encourage the ECDC to work towards an updated review within a reasonable time frame to avoid misinterpretation by decision-making bodies across Europe.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 3","pages":"301-305"},"PeriodicalIF":1.7,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703587/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142956481","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Vitamin D and COVID-19: comparative analysis with other respiratory infections and impact of comorbidities. 维生素D与COVID-19:与其他呼吸道感染及合并症影响的比较分析
IF 1.7
GERMS Pub Date : 2024-09-30 eCollection Date: 2024-09-01 DOI: 10.18683/germs.2024.1435
Laura Constantin, Anca Ungurianu, Isabela Ţârcomnicu, Ema Bălulescu, Denisa Margină
{"title":"Vitamin D and COVID-19: comparative analysis with other respiratory infections and impact of comorbidities.","authors":"Laura Constantin, Anca Ungurianu, Isabela Ţârcomnicu, Ema Bălulescu, Denisa Margină","doi":"10.18683/germs.2024.1435","DOIUrl":"https://doi.org/10.18683/germs.2024.1435","url":null,"abstract":"<p><strong>Introduction: </strong>The COVID-19 pandemic has promoted an intensive investigation into the pathophysiological mechanisms of SARS-CoV-2 infection, risk factors, and its impact on disease severity. Vitamin D has generated significant attention for its potential role in viral prevention and immune defense due to its pleiotropic functions, including immunomodulation and antimicrobial effects. This study aimed to assess serum 25(OH)D3 levels in patients with COVID-19 compared to those with other viral respiratory infections and to evaluate associations of vitamin D levels with symptomatology, clinical characteristics, presence of comorbidities and laboratory investigation.</p><p><strong>Methods: </strong>The study included 78 patients admitted to a hospital with COVID-19 (52 patients) or other viral respiratory infections (26 patients). Routine blood biomarkers, markers of inflammation, markers of endothelial dysfunction, serum 25(OH)D3 were analyzed, and patients were classified according to vitamin D levels and presence of comorbidities.</p><p><strong>Results: </strong>Most patients had vitamin D levels <30 ng/mL and there was no significant difference in 25(OH)D3 levels between patients with and without COVID-19 (p=0.768). Aging and comorbidity prevalence were significantly increased in the COVID-19 than in the non-COVID-19 group (p<0.001; p=0.049). A significant positive correlation was determined between endocan level and serum ferritin concentration in patients with COVID-19 and vitamin D deficiency. A borderline significantly elevated NLR was observed in patients with COVID-19 who were also vitamin D deficient, compared with the similar non-COVID-19 subgroup (p=0.05). In patients with COVID-19 and insufficient vitamin D, levels of 25(OH)D negatively correlated with endocan. Interestingly, COVID-19 patients with diabetes exhibited significantly lower 25(OH)D3 levels compared to non-diabetic patients (p=0.003), along with higher ferritin levels, suggesting a potential association between vitamin D deficiency and diabetes in COVID-19.</p><p><strong>Conclusions: </strong>These findings contribute to the understanding of the complex interplay between vitamin D status, comorbidities, and COVID-19 outcomes, emphasizing the need for further research to elucidate their underlying mechanisms and clinical implications.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 3","pages":"232-245"},"PeriodicalIF":1.7,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703589/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142956493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
In vivo systemic vancomycin determination from polymethyl methacrylate and morselized bone allograft used in two stage septic knee revision arthroplasty. 聚甲基丙烯酸甲酯和异体骨块在两期化脓性膝关节置换术中的体内系统万古霉素测定。
IF 1.7
GERMS Pub Date : 2024-09-30 eCollection Date: 2024-09-01 DOI: 10.18683/germs.2024.1440
Andrei Bunea, Dan Lăptoiu, Isabela Târcomnicu, Dan Oţelea, Gheorghe Popescu, Rodica Marinescu
{"title":"In vivo systemic vancomycin determination from polymethyl methacrylate and morselized bone allograft used in two stage septic knee revision arthroplasty.","authors":"Andrei Bunea, Dan Lăptoiu, Isabela Târcomnicu, Dan Oţelea, Gheorghe Popescu, Rodica Marinescu","doi":"10.18683/germs.2024.1440","DOIUrl":"https://doi.org/10.18683/germs.2024.1440","url":null,"abstract":"<p><strong>Introduction: </strong>This paper examines the use of local antibiotic therapy in one-stage septic revision surgery for late periprosthetic joint infections (PJIs). This case study suggests that morselized bone allografts impregnated with antibiotics in powder form are a preferable alternative to polymethyl methacrylate (PMMA) because they can generate higher local antibiotic concentrations. Current research also recommends using vancomycin and aminoglycosides as the preferred choice of antibiotics, as they may have low diffusion in tissues when administered intravenously, but are effective when administered locally. The article emphasizes the importance of achieving high local antibiotic concentrations to eradicate bacterial biofilms and provides guidelines for the preparation of bone allografts.</p><p><strong>Case report: </strong>The paper assesses the case study of a 68-year-old male patient who underwent two-stage total revision surgery for a late septic failure of the endoprosthesis (approximatively one year after implantation). The first stage involved removing the implant, debridement, lavage, and setting a fixed spacer manually made from polymethyl methacrylate impregnated with 4 g of vancomycin. The second stage of revision surgery utilized a morselized bone allograft impregnated with 4 g of vancomycin as a means of local antibiotic therapy and bone defect coverage. Systemic levels of vancomycin were measured at 4, 8, 12 and 24 hours respectively after surgery. During this period, no systemic vancomycin was administered. After the second stage was carried out and the testing was carried out, systemic vancomycin therapy was initiated and the plasma levels of the drug were assessed and subsequently therapeutic doses were adjusted.</p><p><strong>Conclusions: </strong>Vancomycin loaded bone allograft achieved higher systemic concentrations that its polymethyl methacrylate counterpart, when being manually loaded with the same amount of antibiotic. Nonetheless, the levels were well below nephrotoxic levels, indicating that this may be a valuable tool for local means of antibiotic therapy in selected patients that could not endure such a systemic therapeutic regiment. For septic revisions, antibiotic loaded bone allograft holds a valuable place in the surgical arsenal of local antimicrobial treatment, by far exceeding that of the polymethyl methacrylate.</p>","PeriodicalId":45107,"journal":{"name":"GERMS","volume":"14 3","pages":"294-300"},"PeriodicalIF":1.7,"publicationDate":"2024-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11703586/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142956472","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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