Microbiology Research最新文献

{"title":"Green Synthesis of Nickel Nanoparticles Using Salvadora persica and Their Application in Antimicrobial Activity against Oral Microbes","authors":"Hanan Balto, Musarat Amina, Ramesa Shafi Bhat, Hanan M. Al-Yousef, Sayed H. Auda, Afaf Elansary","doi":"10.3390/microbiolres14040128","DOIUrl":"https://doi.org/10.3390/microbiolres14040128","url":null,"abstract":"The current study evaluated the biogenic synthesis of nickel oxide nanoparticles (SP-NiONPs) from the root extract of (Salvadora persica) S. persica and their biological properties. The nanoparticles were characterized using spectroscopic and microscopic techniques and then evaluated for their antimicrobial properties against 10 oral pathogens. The ultraviolet-visible (UV–Vis) spectra exhibited a distinctive resonance spectrum at 334 nm for the SP-NiONPs produced from S. persica. The fourier transform infrared (FTIR) analysis revealed the presence of functional groups of biomolecules of S. persica that served as reducing and capping agents of the SP-NiONPs. The scanning electron microscope (SEM) and transmission electron microscopy (TEM) analyses showed that the nanoparticles were spherical-shaped, tightly packed, and ranged in size from 18.20 nm to 45.12 nm. The energy dispersive x-ray (EDX) analysis confirmed 69.9% of the nickel (Ni) content by weight, and the X-ray diffraction (XRD) results showed the face-centered cubic (FCC) crystalline structure of the formed SP-NiONPs. The antioxidant activity of the SP-NiONPs exhibited a dose-dependent profile with an IC50 value of 51.45 ± 0.65 and a 54.13 ± 0.98 DPPH• and ABTS•+ radical scavenging activity, respectively. The SP-NiONPs showed an antibacterial activity against all the test strains; however, E. cloacae was found to be the most sensitive strain, with an inhibition zone of 31 ± 0.50 mm. The SEM image of the E. cloacae cells treated with SP-NiONPs showed irregular shapes and ruptured, destroyed cell membranes. Our findings revealed that SP-NiONPs could be used as excellent antibacterial agents against oral pathogens.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":" 6","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135191588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Interaction between the Oral Microbiome and Systemic Diseases: A Narrative Review","authors":"Massimo Pisano, Francesco Giordano, Giuseppe Sangiovanni, Nicoletta Capuano, Alfonso Acerra, Francesco D’Ambrosio","doi":"10.3390/microbiolres14040127","DOIUrl":"https://doi.org/10.3390/microbiolres14040127","url":null,"abstract":"Background: The human being is defined as a ‘superorganism’ since it is made up of its own cells and microorganisms that reside inside and outside the human body. Commensal microorganisms, which are even ten times more numerous than the cells present in the body, perform very important functions for the host, as they contribute to the health of the host, resist pathogens, maintain homeostasis, and modulate the immune system. In the mouth, there are different types of microorganisms, such as viruses, mycoplasmas, bacteria, archaea, fungi, and protozoa, often organized in communities. The aim of this umbrella review is to evaluate if there is a connection between the oral microbiome and systematic diseases. Methodology: A literature search was conducted through PubMed/MEDLINE, the COCHRANE library, Scopus, and Web of Science databases without any restrictions. Because of the large number of articles included and the wide range of methods and results among the studies found, it was not possible to report the results in the form of a systematic review or meta-analysis. Therefore, a narrative review was conducted. We obtained 73.931 results, of which 3593 passed the English language filter. After the screening of the titles and abstracts, non-topic entries were excluded, but most articles obtained concerned interactions between the oral microbiome and systemic diseases. Discussion: A description of the normal microbial flora was present in the oral cavity both in physiological conditions and in local pathological conditions and in the most widespread systemic pathologies. Furthermore, the therapeutic precautions that the clinician can follow in order to intervene on the change in the microbiome have been described. Conclusions: This review highlights what are the intercorrelations of the oral microbiota in healthy subjects and in subjects in pathological conditions. According to several recent studies, there is a clear correlation between dysbiosis of the oral microbiota and diseases such as diabetes, cardiovascular diseases, chronic inflammatory diseases, and neurodegenerative diseases.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":" 42","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135240898","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Model of Pulmonary Co-Infection of Aspergillus and Pseudomonas in Immunocompetent Mice","authors":"Gabriele Sass, David A. Stevens","doi":"10.3390/microbiolres14040126","DOIUrl":"https://doi.org/10.3390/microbiolres14040126","url":null,"abstract":"Co-infection with Pseudomonas (Pa) and Aspergillus (Af) commonly occurs in the airways of immune-compromised patients or in cystic fibrosis and frequently results in more severe outcomes than mono-infection. We affixed both pathogens to agar beads, separately (Af beads, Pa beads) or on the same bead (AfPa beads) and infected immunocompetent mice, an in vivo Af-Pa interaction model. Endotracheal administration was superior to intranasal, allowing larger beads to be administered resulting in longer lung residence. The CFU of the Af beads, diameter 150–250 µm, were detectable for ≤21 days. Af-bead-infected mice cleared the Af infection more than mice infected with AfPa beads, but Af clearance was the same with a combination of beads (Af beads + Pa beads). Pa-infected mice had more Pa clearance in the presence of Af than with Pa beads alone. In vitro studies supported our conclusion that the close proximity of Af and Pa (on AfPa beads) was disadvantageous for Af, whereas a larger distance (Af + Pa beads) was not. We demonstrated that the interaction between Pseudomonas and Aspergillus during co-infection can be studied in immunocompetent mice. The mutual inhibition of Af and Pa in vivo appears to be dependent on their proximity. We review the literature relating to animal models of infection with Af, Pa, or both.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"346 2‐3","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135392457","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Respiratory Way without Microbial Growth of Paracoccus denitrificans","authors":"Monserrat Alonso-Vargas, Lizbeth Anahí Portillo-Torres, Yuridia Mercado-Flores, María del Rocío Ramírez-Vargas, Arturo Cadena-Ramírez","doi":"10.3390/microbiolres14040125","DOIUrl":"https://doi.org/10.3390/microbiolres14040125","url":null,"abstract":"This study elucidates the effects of Carbon/Nitrogen (C/N) ratios on the respiratory behavior of Paracoccus denitrificans PD1222, a microorganism noted for its metabolic adaptability. We explored its ability to undergo dissimilative denitrification, a less understood process where energy is harnessed from nutrient consumption without resultant growth. By manipulating the C/N ratios and available nitrogen sources in our experimental design, we were able to demonstrate significant shifts in P. denitrificans metabolic behavior. At a C/N ratio of 1.34, with nitrate as the sole nitrogen source, dissimilative denitrification occurred with no observable increase in biomass. Succinate, the provided carbon source, was quickly metabolized without contributing to cell growth. Our results contribute to the understanding of environmental microbiology, specifically denitrification processes, and indicate P. denitrificans’s potential for wastewater treatment scenarios, where pollutant consumption without biomass proliferation is desired.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135590005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Preliminary Data on Escherichia coli, Yersinia enterocolitica, and Other Bacteria, as well as Absent African Swine Fever Virus in the Gut Microbiota of Wild Mice and Voles from Bulgaria","authors":"Yana Ilieva, Maya Margaritova Zaharieva, Lyudmila Dimitrova, Mila D. Kaleva, Joanna Jordanova, Maya Dimitrova, Michaela Beltcheva, Iliana Aleksieva, Yordan Georgiev, Yordan Manasiev, Hristo Najdenski","doi":"10.3390/microbiolres14040123","DOIUrl":"https://doi.org/10.3390/microbiolres14040123","url":null,"abstract":"Small mammals are bioindicator organisms, and, through their gut microbiota (GM), could be carriers of pathogens and resistant bacteria. Also, wild GM composition has been suggested to have large implications for conservation efforts. Seventeen bacterial species were obtained from intestinal samples of Bulgarian yellow-necked mice (Apodemus flavicollis) and bank voles (Myodes glareolus) via classic microbiological cultivation and biochemical identification. Twelve Gram-negative—Escherichia coli, Yersinia enterocolitica, Yersinia kristensenii, Hafnia alvei, Serratia liquefaciens, Serratia marcescens, Serratia proteamaculans, Pseudescherichia vulneris, Klebsiella pneumoniae ssp. ozaenae, Enterobacter cloacea, Pantoea agglomerans, Pseudomonas fluorescens group—and five Gram-positive bacteria, Enterococcus faecium, Enterococcus faecalis, Enterococcus hirae, Bacillus thuringiensis, and Lysinibacillus sphaericus, were discovered. Enterobacteriaceae was the most abundant family. The isolates belonged to one of the major reported taxa in rodents, Firmicutes (the Gram-positive species) and to the less abundant, but still among the first, phyla, Proteobacteria (the Gram-negative strains). We did not find any members of the other major phylum, Bacteroidetes, likely due to lack of metagenomic techniques. E. coli and Y. enterocolitica were confirmed with polymerase chain reaction. Almost all strains had pathogenic potential, but the good condition of the test animals suggests their commensal role. The Y. enterocolitica strains did not have the ail pathogenicity gene. There was high prevalence of multi-drug resistance (MDR), but for the expected species with high level of intrinsic resistance, such as the enterococci and S. marcescens. E. coli and some other species had very low antimicrobial resistance (AMR), in line with other studies of wild rodents. Many of the strains had biotechnological potential; e.g., B. thuringiensis is the most used biological insecticide, with its proteins incorporated into the Bt genetically modified maize. The GM of the tested wild mice and voles from Bulgaria proved to be a source of bacterial diversity; many of the strains were promising in terms of biotechnology, and, in addition, the samples did not contain the African swine fever virus.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"38 15","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135773331","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Identification, Viability, and Membrane Potential during the Cryopreservation of Autochthonous Lactic-Acid Bacteria Isolated from Artisanal Adobera Cheese from Los Altos de Jalisco","authors":"Ramón Ignacio Arteaga-Garibay, Raúl Jacobo Delgado-Macuil, Lorena Jacqueline Gómez-Godínez, Carlos Iván Cruz-Cárdenas, Zuamí Villagrán, Silvia Giono-Cerezo, Lily Xochitl Zelaya-Molina, Luis Miguel Anaya-Esparza, José Martín Ruvalcaba-Gómez","doi":"10.3390/microbiolres14040124","DOIUrl":"https://doi.org/10.3390/microbiolres14040124","url":null,"abstract":"Lactic acid bacteria (LAB) comprise a group of microorganisms responsible for developing the sensory and chemical characteristics of several foods and fermented products, particularly cheese. For this reason, after isolation and identification of LAB, validated protocols and procedures for their long-term preservation without compromising its integrity and technological properties, as well as methodologies aiming to assess their viability and integrity are paramount. This study aimed to isolate and identify autochthonous LAB from artisanal Adobera cheese and determine the effect of LAB cryopreservation with thioglycolate broth and glycerol on their viability, membrane integrity, and kinetics. Sixteen LAB were isolated and genetically identified from artisanal cheese samples; eleven of those strains were selected (genus Lactobacillus, Leuconostoc, Streptococcus, and Lactococcus) and included in the cryo-preservation assay. The initial average concentration of the bacterial suspensions was 6.89 log10 CFU mL−1; increasing to 8.9 log10 CFU mL−1 21 days later and slightly reduced at day 42 post-preservation (losses below one logarithm). About 77% of the cells maintained their membrane potential 180 days after their preservation and showed normal Kinetic parameters, maintaining normal adaptation times (Lag phase) and Log phases (9 h average), before reaching the stationary phase. The proposed protocol constitutes a viable alternative to the long-term preservation of different LAB genera because it keeps their viability and integrity. Using flow cytometry allowed the enumeration of viable LAB and provide evidence of the integrity of their membrane.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"38 16","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135773329","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Geobacter grbiciae—A New Electron Donor in the Formation of Co-Cultures via Direct Interspecies Electron Transfer","authors":"Panbo Deng, Lulu Wang, Xia Li, Jinshan Zhang, Haiming Jiang","doi":"10.3390/microbiolres14040122","DOIUrl":"https://doi.org/10.3390/microbiolres14040122","url":null,"abstract":"Geobacter grbiciae can grow via coupling oxidation of ethanol to the reduction of various forms of soluble Fe(III) and poorly crystalline Fe(III) oxide, suggesting that G. grbiciae can act as an electron-donor microbe for forming co-cultures through direct interspecies electron transfer (DIET). In this report, potential co-cultures through DIET of G. grbiciae and Methanosarcina barkeri 800, G. sulfurreducens Δhyb, or Methanospirillum hungatei, as electron-acceptor microbes, were examined. Co-cultures of G. grbiciae and G. sulfurreducens Δhyb were performed with ethanol as the sole electron-donor substance and fumarate as the electron-acceptor substance in the presence of granular activated carbon (GAC), magnetite, or polyester felt. The conditions for co-culturing G. grbiciae and M. barkeri 800 (or M. hungatei) were the same as those for G. grbiciae and G. sulfurreducens Δhyb, except fumarate was absent and different cultivation temperatures were used. All co-cultures were anaerobically cultivated. Samples were regularly withdrawn from the co-cultures to monitor methane, fumarate, and succinate via gas or high-performance liquid chromatography. G. grbiciae formed functional co-cultures with M. barkeri 800 in the presence of GAC or magnetite. No co-culture of G. grbiciae with the H2/formate-utilizing methanogen M. hungatei was observed. Additionally, G. grbiciae formed functional co-cultures with H2/formate-un-utilizing G. sulfurreducens Δhyb without the GAC or magnetite supplement. These findings indicate electron transfer between G. grbiciae and M. barkeri 800/G. sulfurreducens Δhyb is via DIET rather than H2/formate, confirming that G. grbiciae acts as an electron-donor microbe. Although the co-cultures of G. grbiciae and M. barkeri 800 syntrophically converted ethanol to methane through DIET, the conversion of propionate or butyrate to methane was not observed. These findings expand the range of microbes that can act as electron donors for interaction with other microbes through DIET. However, propionate and butyrate metabolism through DIET in mixed microbial communities with methane as a product requires further analysis. This study provides a framework for finding new electron-donor microbes.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"50 3","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135932862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Antibiotic-Resistant Bacteria in Environmental Water Sources from Southern Chile: A Potential Threat to Human Health","authors":"Matías Jofré Bartholin, Boris Barrera Vega, Liliana Berrocal Silva","doi":"10.3390/microbiolres14040121","DOIUrl":"https://doi.org/10.3390/microbiolres14040121","url":null,"abstract":"Antimicrobial resistance (AMR) is a critical global issue affecting public and animal health. The overuse of antibiotics in human health, animal production, agriculture, and aquaculture has led to the selection of antibiotic-resistant strains, particularly in Gram-negative bacteria. Mutations and horizontal gene transfer play a significant role in the development of antimicrobial resistance, leading to the reduced efficacy of current antibiotics. Today, AMR in bacteria and antibiotic-resistance genes (ARGs) are increasingly recognized in multiple environmental sources, including recreational and irrigation waters. This study aims to identify Gram-negative bacteria from surface aquatic reservoirs in southern Chile and assess their susceptibility to clinically relevant antibiotics. Water samples were collected from four lakes, five rivers, one waterfall, and one watershed in southern Chile to isolate environmental Gram-negative bacilli (GNB). API-20E and MALDI–TOF were employed for bacterial identification. Kirby–Bauer disc diffusion tests and multiplex PCR were performed to determine their susceptibility profile. A total of 26 GNB strains were isolated from environmental water samples, predominantly belonging to the Pseudomonas (n = 9) and Acinetobacter (n = 7) genera. Among these strains, 96.2% were resistant to ampicillin and cefazoline, while 26.9% and 34.6% showed resistance to ceftazidime and cefepime, respectively. Additionally, 38.5% exhibited resistance to colistin. Two Enterobacter cloacae strains obtained from Cachapoal River (sixth region) and Villarrica Lake (ninth region), respectively, presented a multidrug-resistant (MDR) phenotype and carried at least two extended-spectrum β-lactamase (ESBL) genes. Thus, antibiotic-resistant GNB and ARGs were found in natural water reservoirs, raising concerns about the dissemination of resistance determinants among potentially pathogenic bacteria in environmental microbial communities.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"35 11","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135270789","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Phaeohyphomycosis: A Review","authors":"Carlos D. Sánchez-Cárdenas, Mariel Isa-Pimentel, Roberto Arenas","doi":"10.3390/microbiolres14040120","DOIUrl":"https://doi.org/10.3390/microbiolres14040120","url":null,"abstract":"Phaeohyphomycosis, a worldwide fungal infection, refers to uncommon superficial, subcutaneous, or systemic infections caused by melanized fungi. Currently, about 70 genera and 150 species have been described. It can be confirmed by mycological, histopathological, or molecular methods. Treatment can be performed by surgery or systemic antifungals.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"54 4","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135871307","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Exploring the Variability in Antibacterial Testing of Resin Dental Composites among Investigators: A Narrative Review","authors":"Ashlesha Pal, Noorulain Altaf, Anum Mahmood, Shazia Akbar, Nazrah Maher, Naresh Kumar, Muhammad Sohail Zafar, Laura Murcia, Ricardo E. Oñate-Sánchez","doi":"10.3390/microbiolres14040119","DOIUrl":"https://doi.org/10.3390/microbiolres14040119","url":null,"abstract":"Caries is a common dental problem brought on by factors like excessive sugar consumption, poor oral hygiene, and the presence of microorganisms in the mouth. This dental pathology is treated with a variety of filling materials, including tooth-colored direct resin dental composite (RDC), glass ionomer cement (GIC), and dental amalgam (also known as silver filling). RDC is the most preferred filling material in dental clinics due to its excellent esthetics and minimal tooth preparation, making it the need of the modern era. However, antimicrobial agents were added to this material in order to enhance its ability to prevent secondary caries. The antibacterial activity of RDC has been tested using a variety of methods, but testing protocols have been found to vary. Thusly, the point of this article is to examine the disparity in the strategy involved by specialists for testing the antibacterial properties of RDCs.","PeriodicalId":43788,"journal":{"name":"Microbiology Research","volume":"61 4","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135809955","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}