ACM Transactions on Parallel Computing最新文献

{"title":"Performance Implication of Tensor Irregularity and Optimization for Distributed Tensor Decomposition","authors":"Zheng Miao, Jon C. Calhoun, Rong Ge, Jiajia Li","doi":"10.1145/3580315","DOIUrl":"https://doi.org/10.1145/3580315","url":null,"abstract":"Tensors are used by a wide variety of applications to represent multi-dimensional data; tensor decompositions are a class of methods for latent data analytics, data compression, and so on. Many of these applications generate large tensors with irregular dimension sizes and nonzero distribution. CANDECOMP/PARAFAC decomposition (Cpd) is a popular low-rank tensor decomposition for discovering latent features. The increasing overhead on memory and execution time of Cpd for large tensors requires distributed memory implementations as the only feasible solution. The sparsity and irregularity of tensors hinder the improvement of performance and scalability of distributed memory implementations. While previous works have been proved successful in Cpd for tensors with relatively regular dimension sizes and nonzero distribution, they either deliver unsatisfactory performance and scalability for irregular tensors or require significant time overhead in preprocessing. In this work, we focus on medium-grained tensor distribution to address their limitation for irregular tensors. We first thoroughly investigate through theoretical and experimental analysis. We disclose that the main cause of poor Cpd performance and scalability is the imbalance of multiple types of computations and communications and their tradeoffs; and sparsity and irregularity make it challenging to achieve their balances and tradeoffs. Irregularity of a sparse tensor is categorized based on two aspects: very different dimension sizes and a non-uniform nonzero distribution. Typically, focusing on optimizing one type of load imbalance causes other ones more severe for irregular tensors. To address such challenges, we propose irregularity-aware distributed Cpd that leverages the sparsity and irregularity information to identify the best tradeoff between different imbalances with low time overhead. We materialize the idea with two optimization methods: the prediction-based grid configuration and matrix-oriented distribution policy, where the former forms the global balance among computations and communications, and the latter further adjusts the balances among computations. The experimental results show that our proposed irregularity-aware distributed Cpd is more scalable and outperforms the medium- and fine-grained distributed implementations by up to 4.4 × and 11.4 × on 1,536 processors, respectively. Our optimizations support different sparse tensor formats, such as compressed sparse fiber (CSF), coordinate (COO), and Hierarchical Coordinate (HiCOO), and gain good scalability for all of them.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-02-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43336829","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Tridigpu: A GPU Library for Block Tridiagonal and Banded Linear Equation Systems","authors":"Christopher J. Klein, R. Strzodka","doi":"10.1145/3580373","DOIUrl":"https://doi.org/10.1145/3580373","url":null,"abstract":"In this article, we present a CUDA library with a C API for solving block cyclic tridiagonal and banded systems on one GPU. The library can process block tridiagonal systems with block sizes from 1 × 1 (scalar) to 4 × 4 and banded systems with up to four sub- and superdiagonals. For the compute-intensive block size cases and cases with many right-hand sides, we write out an explicit factorization to memory; however, for the scalar case, the fastest approach is to only output the coarse system and recompute the factorization. Prominent features of the library are (scaled) partial pivoting for improved numeric stability; highest-performance kernels, which completely utilize GPU memory bandwidth; and support for multiple sparse or dense right-hand side and solution vectors. The additional memory consumption is only 5% of the original tridiagonal system, which enables the solution of systems up to GPU memory size. The performance of the state-of-the-art scalar tridiagonal solver of cuSPARSE is outperformed by factor 5 for large problem sizes of 225 unknowns, on a GeForce RTX 2080 Ti.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45870092","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Non-overlapping High-accuracy Parallel Closure for Compact Schemes: Application in Multiphysics and Complex Geometry","authors":"P. Sundaram, A. Sengupta, V. K. Suman, T. Sengupta","doi":"10.1145/3580005","DOIUrl":"https://doi.org/10.1145/3580005","url":null,"abstract":"Compact schemes are often preferred in performing scientific computing for their superior spectral resolution. Error-free parallelization of a compact scheme is a challenging task due to the requirement of additional closures at the inter-processor boundaries. Here, sources of the error due to sub-domain boundary closures for the compact schemes are analyzed with global spectral analysis. A high-accuracy parallel computing strategy devised in “ A high-accuracy preserving parallel algorithm for compact schemes for DNS. ACM Trans. Parallel Comput. 7, 4, 1-32 (2020)” systematically eliminates error due to parallelization and does not require overlapping points at the sub-domain boundaries. This closure is applicable for any compact scheme and is termed here as non-overlapping high-accuracy parallel (NOHAP) sub-domain boundary closure. In the present work, the advantages of the NOHAP closure are shown with the model convection equation and by solving the compressible Navier–Stokes equation for three-dimensional Rayleigh–Taylor instability simulations involving multiphysics dynamics and high Reynolds number flow past a natural laminar flow airfoil using a body-conforming curvilinear coordinate system. Linear scalability of the NOHAP closure is shown for the large-scale simulations using up to 19,200 processors.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45088678","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Fast Parallel Algorithms for Enumeration of Simple, Temporal, and Hop-constrained Cycles","authors":"J. Blanuša, K. Atasu, P. Ienne","doi":"10.1145/3611642","DOIUrl":"https://doi.org/10.1145/3611642","url":null,"abstract":"Cycles are one of the fundamental subgraph patterns and being able to enumerate them in graphs enables important applications in a wide variety of fields, including finance, biology, chemistry, and network science. However, to enable cycle enumeration in real-world applications, efficient parallel algorithms are required. In this work, we propose scalable parallelisation of state-of-the-art sequential algorithms for enumerating simple, temporal, and hop-constrained cycles. First, we focus on the simple cycle enumeration problem and parallelise the algorithms by Johnson and by Read and Tarjan in a fine-grained manner. We theoretically show that our resulting fine-grained parallel algorithms are scalable, with the fine-grained parallel Read-Tarjan algorithm being strongly scalable. In contrast, we show that straightforward coarse-grained parallel versions of these simple cycle enumeration algorithms that exploit edge- or vertex-level parallelism are not scalable. Next, we adapt our fine-grained approach to enable the enumeration of cycles under time-window, temporal, and hop constraints. Our evaluation on a cluster with 256 CPU cores that can execute up to 1,024 simultaneous threads demonstrates a near-linear scalability of our fine-grained parallel algorithms when enumerating cycles under the aforementioned constraints. On the same cluster, our fine-grained parallel algorithms achieve, on average, one order of magnitude speedup compared to the respective coarse-grained parallel versions of the state-of-the-art algorithms for cycle enumeration. The performance gap between the fine-grained and the coarse-grained parallel algorithms increases as we use more CPU cores.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2023-01-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45204474","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Parallel Minimum Cuts in O(m log2 n) Work and Low Depth","authors":"Daniel Anderson, G. Blelloch","doi":"10.1145/3565557","DOIUrl":"https://doi.org/10.1145/3565557","url":null,"abstract":"We present a randomized O(m log2 n) work, O(polylog n) depth parallel algorithm for minimum cut. This algorithm matches the work bounds of a recent sequential algorithm by Gawrychowski, Mozes, and Weimann [ICALP’20], and improves on the previously best parallel algorithm by Geissmann and Gianinazzi [SPAA’18], which performs O(m log4 n) work in O(polylog n) depth. Our algorithm makes use of three components that might be of independent interest. Firstly, we design a parallel data structure that efficiently supports batched mixed queries and updates on trees. It generalizes and improves the work bounds of a previous data structure of Geissmann and Gianinazzi and is work efficient with respect to the best sequential algorithm. Secondly, we design a parallel algorithm for approximate minimum cut that improves on previous results by Karger and Motwani. We use this algorithm to give a work-efficient procedure to produce a tree packing, as in Karger’s sequential algorithm for minimum cuts. Lastly, we design an efficient parallel algorithm for solving the minimum 2-respecting cut problem.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2022-12-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46270508","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Optimal Algorithms for Right-sizing Data Centers","authors":"S. Albers, Jens Quedenfeld","doi":"10.1145/3565513","DOIUrl":"https://doi.org/10.1145/3565513","url":null,"abstract":"Electricity cost is a dominant and rapidly growing expense in data centers. Unfortunately, much of the consumed energy is wasted, because servers are idle for extended periods of time. We study a capacity management problem that dynamically right-sizes a data center, matching the number of active servers with the varying demand for computing capacity. We resort to a data-center optimization problem introduced by Lin, Wierman, Andrew, and Thereska [25, 27] that, over a time horizon, minimizes a combined objective function consisting of operating cost, modeled by a sequence of convex functions, and server switching cost. All prior work addresses a continuous setting in which the number of active servers, at any time, may take a fractional value. In this article, we investigate for the first time the discrete data-center optimization problem where the number of active servers, at any time, must be integer valued. Thereby, we seek truly feasible solutions. First, we show that the offline problem can be solved in polynomial time. Our algorithm relies on a new, yet intuitive graph theoretic model of the optimization problem and performs binary search in a layered graph. Second, we study the online problem and extend the algorithm Lazy Capacity Provisioning (LCP) by Lin et al. [25, 27] to the discrete setting. We prove that LCP is 3-competitive. Moreover, we show that no deterministic online algorithm can achieve a competitive ratio smaller than 3. Hence, while LCP does not attain an optimal competitiveness in the continuous setting, it does so in the discrete problem examined here. We prove that the lower bound of 3 also holds in a problem variant with more restricted operating cost functions, introduced by Lin et al. [25]. In addition, we develop a randomized online algorithm that is 2-competitive against an oblivious adversary. It is based on the algorithm of Bansal et al. [7] (a deterministic, 2-competitive algorithm for the continuous setting) and uses randomized rounding to obtain an integral solution. Moreover, we prove that 2 is a lower bound for the competitive ratio of randomized online algorithms, so our algorithm is optimal. We prove that the lower bound still holds for the more restricted model. Finally, we address the continuous setting and give a lower bound of 2 on the best competitiveness of online algorithms. This matches an upper bound by Bansal et al. [7]. A lower bound of 2 was also shown by Antoniadis and Schewior [4]. We develop an independent proof that extends to the scenario with more restricted operating cost.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2022-10-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42464168","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"A Family of Relaxed Concurrent Queues for Low-Latency Operations and Item Transfers","authors":"Giorgos Kappes, S. Anastasiadis","doi":"10.1145/3565514","DOIUrl":"https://doi.org/10.1145/3565514","url":null,"abstract":"The producer-consumer communication over shared memory is a critical function of current scalable systems. Queues that provide low latency and high throughput on highly utilized systems can improve the overall performance perceived by the end users. In order to address this demand, we set as priority to achieve both high operation performance and item transfer speed. The Relaxed Concurrent Queues (RCQs) are a family of queues that we have designed and implemented for that purpose. Our key idea is a relaxed ordering model that splits the enqueue and dequeue operations into a stage of sequential assignment to a queue slot and a stage of concurrent execution across the slots. At each slot, we apply no order restrictions among the operations of the same type. We define several variants of the RCQ algorithms with respect to offered concurrency, required hardware instructions, supported operations, occupied memory space, and precondition handling. For specific RCQ algorithms, we provide pseudo-code definitions and reason about their correctness and progress properties. Additionally, we theoretically estimate and experimentally validate the worst-case distance between an RCQ algorithm and a strict first-in-first-out (FIFO) queue. We developed prototype implementations of the RCQ algorithms and experimentally compare them with several representative strict FIFO and relaxed data structures over a range of workload and system settings. The RCQS algorithm is a provably linearizable lock-free member of the RCQ family. We experimentally show that RCQS achieves factors to orders of magnitude advantage over the state-of-the-art strict or relaxed queue algorithms across several latency and throughput statistics of the queue operations and item transfers.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2022-10-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45988660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Orthogonal Layers of Parallelism in Large-Scale Eigenvalue Computations","authors":"A. Alvermann, G. Hager, H. Fehske","doi":"10.1145/3614444","DOIUrl":"https://doi.org/10.1145/3614444","url":null,"abstract":"We address the communication overhead of distributed sparse matrix-(multiple)-vector multiplication in the context of large-scale eigensolvers, using filter diagonalization as an example. The basis of our study is a performance model, which includes a communication metric that is computed directly from the matrix sparsity pattern without running any code. The performance model quantifies to which extent scalability and parallel efficiency are lost due to communication overhead. To restore scalability, we identify two orthogonal layers of parallelism in the filter diagonalization technique. In the horizontal layer the rows of the sparse matrix are distributed across individual processes. In the vertical layer bundles of multiple vectors are distributed across separate process groups. An analysis in terms of the communication metric predicts that scalability can be restored if, and only if, one implements the two orthogonal layers of parallelism via different distributed vector layouts. Our theoretical analysis is corroborated by benchmarks for application matrices from quantum and solid state physics, road networks, and nonlinear programming. We finally demonstrate the benefits of using orthogonal layers of parallelism with two exemplary application cases—an exciton and a strongly correlated electron system—which incur either small or large communication overhead.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2022-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41741959","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Checkpointing Workflows à la Young/Daly Is Not Good Enough","authors":"A. Benoit, Lucas Perotin, Y. Robert, Hongyang Sun","doi":"10.1145/3548607","DOIUrl":"https://doi.org/10.1145/3548607","url":null,"abstract":"This article revisits checkpointing strategies when workflows composed of multiple tasks execute on a parallel platform. The objective is to minimize the expectation of the total execution time. For a single task, the Young/Daly formula provides the optimal checkpointing period. However, when many tasks execute simultaneously, the risk that one of them is severely delayed increases with the number of tasks. To mitigate this risk, a possibility is to checkpoint each task more often than with the Young/Daly strategy. But is it worth slowing each task down with extra checkpoints? Does the extra checkpointing make a difference globally? This article answers these questions. On the theoretical side, we prove several negative results for keeping the Young/Daly period when many tasks execute concurrently, and we design novel checkpointing strategies that guarantee an efficient execution with high probability. On the practical side, we report comprehensive experiments that demonstrate the need to go beyond the Young/Daly period and to checkpoint more often for a wide range of application/platform settings.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2022-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47044084","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Improving the Speed and Quality of Parallel Graph Coloring","authors":"Ghadeer Alabandi, Martin Burtscher","doi":"10.1145/3543545","DOIUrl":"https://doi.org/10.1145/3543545","url":null,"abstract":"Graph coloring assigns a color to each vertex of a graph such that no two adjacent vertices get the same color. It is a key building block in many applications. In practice, solutions that require fewer distinct colors and that can be computed faster are typically preferred. Various coloring heuristics exist that provide different quality versus speed tradeoffs. The highest-quality heuristics tend to be slow. To improve performance, several parallel implementations have been proposed. This paper describes two improvements of the widely used LDF heuristic. First, we present a “shortcutting” approach to increase the parallelism by non-speculatively breaking data dependencies. Second, we present “color reduction” techniques to boost the solution of LDF. On 18 graphs from various domains, the shortcutting approach yields 2.5 times more parallelism in the mean, and the color-reduction techniques improve the result quality by up to 20%. Our deterministic CUDA implementation running on a Titan V is 2.9 times faster in the mean and uses as few or fewer colors as the best GPU codes from the literature.","PeriodicalId":42115,"journal":{"name":"ACM Transactions on Parallel Computing","volume":null,"pages":null},"PeriodicalIF":1.6,"publicationDate":"2022-07-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"47285975","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}