Nouamane Bakhdil , Abdelghani El Mousaoui , Abdelilah Hakim
{"title":"Perspectives on modeling pedestrian dynamics by thermostatted kinetic theory","authors":"Nouamane Bakhdil , Abdelghani El Mousaoui , Abdelilah Hakim","doi":"10.1016/j.plrev.2024.08.012","DOIUrl":"10.1016/j.plrev.2024.08.012","url":null,"abstract":"","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"51 ","pages":"Pages 18-19"},"PeriodicalIF":13.7,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142144800","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Why the distinction between language and languages matters Comment on “Language follows a distinct mode of extra-genomic evolution” by Balthasar Bickel, Anne-Lise Giraud, Klaus Zuberbühler, Carel P. van Schaik","authors":"R.I.M. Dunbar","doi":"10.1016/j.plrev.2024.08.010","DOIUrl":"10.1016/j.plrev.2024.08.010","url":null,"abstract":"","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"51 ","pages":"Pages 31-32"},"PeriodicalIF":13.7,"publicationDate":"2024-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142172612","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"White matter, and why twin resemblance can still matter","authors":"Marco Battaglia","doi":"10.1016/j.plrev.2024.08.009","DOIUrl":"10.1016/j.plrev.2024.08.009","url":null,"abstract":"","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"51 ","pages":"Pages 24-26"},"PeriodicalIF":13.7,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142162437","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Xin Di , Li Zhang , Zhiguo Zhang , Bharat B. Biswal
{"title":"Opportunities and challenges in connectivity analysis for task-based fMRI comment on “connectivity analyses for task-based fMRI” by Huang S, De Brigard, F., Cabeza, R, and Davis, S.W.","authors":"Xin Di , Li Zhang , Zhiguo Zhang , Bharat B. Biswal","doi":"10.1016/j.plrev.2024.08.011","DOIUrl":"10.1016/j.plrev.2024.08.011","url":null,"abstract":"","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"51 ","pages":"Pages 13-17"},"PeriodicalIF":13.7,"publicationDate":"2024-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142137494","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Alpha suppression in the context of cross-frequency interactions between fast and intermediate timescales","authors":"Narayanan Srinivasan, Ramya Mudumba","doi":"10.1016/j.plrev.2024.08.008","DOIUrl":"10.1016/j.plrev.2024.08.008","url":null,"abstract":"","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"51 ","pages":"Pages 11-12"},"PeriodicalIF":13.7,"publicationDate":"2024-08-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142098115","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Exploring the genetics of white matter comment on “heritability of white matter in twins: A diffusion neuroimaging review” by Giovanni Videtta, Chiara Colli, Letizia Squarcina, Corrado Fagnani, Emanuela Medda, Paolo Brambilla, and Giuseppe Delvecchio","authors":"Christopher M. Filley","doi":"10.1016/j.plrev.2024.08.007","DOIUrl":"10.1016/j.plrev.2024.08.007","url":null,"abstract":"","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"51 ","pages":"Pages 9-10"},"PeriodicalIF":13.7,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142088721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Life and self-organization on the way to artificial intelligence for collective dynamics","authors":"Nicola Bellomo , Marina Dolfin , Jie Liao","doi":"10.1016/j.plrev.2024.08.006","DOIUrl":"10.1016/j.plrev.2024.08.006","url":null,"abstract":"<div><p>This work is dedicated to the study, modeling, and simulation, of the collective dynamics of interacting living entities. The first perspective is to develop a mathematical theory of swarm intelligence for the above mentioned systems. The second perspective is to design the conceptual tools for a theory of artificial intelligence. The aim is to model a dynamics where interacting entities learn from other entities as well as from the environment and external actions. Then, out of this collective learning process, each entity develops a strategy to pursue specific goals through a decision making process that leads to the dynamic. The approach is based on developments of the kinetic theory of active particles. This paper does not naively state that the problem of artificial intelligence for collective dynamics has been exhaustively considered, but some hints are proposed to contribute to such a challenging perspective in view of further developments.</p></div>","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"51 ","pages":"Pages 1-8"},"PeriodicalIF":13.7,"publicationDate":"2024-08-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1571064524000976/pdfft?md5=760dc8389abd8423b1d9393d25dcefd0&pid=1-s2.0-S1571064524000976-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142088720","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The role of alpha activity in regulating inward and outward conscious perception","authors":"A. Zaccaro , B. Neri","doi":"10.1016/j.plrev.2024.08.005","DOIUrl":"10.1016/j.plrev.2024.08.005","url":null,"abstract":"","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"50 ","pages":"Pages 226-227"},"PeriodicalIF":13.7,"publicationDate":"2024-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142012948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Data-driven mathematical modeling approaches for COVID-19: A survey","authors":"Jacques Demongeot , Pierre Magal","doi":"10.1016/j.plrev.2024.08.004","DOIUrl":"10.1016/j.plrev.2024.08.004","url":null,"abstract":"<div><p>In this review, we successively present the methods for phenomenological modeling of the evolution of reported and unreported cases of COVID-19, both in the exponential phase of growth and then in a complete epidemic wave. After the case of an isolated wave, we present the modeling of several successive waves separated by endemic stationary periods. Then, we treat the case of multi-compartmental models without or with age structure. Eventually, we review the literature, based on 260 articles selected in 11 sections, ranging from the medical survey of hospital cases to forecasting the dynamics of new cases in the general population. This review favors the phenomenological approach over the mechanistic approach in the choice of references and provides simulations of the evolution of the number of observed cases of COVID-19 for 10 states (California, China, France, India, Israel, Japan, New York, Peru, Spain and United Kingdom).</p></div>","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"50 ","pages":"Pages 166-208"},"PeriodicalIF":13.7,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1571064524000952/pdfft?md5=f967bce35df14fa525ec4cc5f498e8f3&pid=1-s2.0-S1571064524000952-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141979564","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Huiying Gong , Hongxing Wang , Yu Wang , Shen Zhang , Xiang Liu , Jincan Che , Shuang Wu , Jie Wu , Xiaomei Sun , Shougong Zhang , Shing-Tung Yau , Rongling Wu
{"title":"Topological change of soil microbiota networks for forest resilience under global warming","authors":"Huiying Gong , Hongxing Wang , Yu Wang , Shen Zhang , Xiang Liu , Jincan Che , Shuang Wu , Jie Wu , Xiaomei Sun , Shougong Zhang , Shing-Tung Yau , Rongling Wu","doi":"10.1016/j.plrev.2024.08.001","DOIUrl":"10.1016/j.plrev.2024.08.001","url":null,"abstract":"<div><p>Forest management by thinning can mitigate the detrimental impact of increasing drought caused by global warming. Growing evidence shows that the soil microbiota can coordinate the dynamic relationship between forest functions and drought intensity, but how they function as a cohesive whole remains elusive. We outline a statistical topology model to chart the roadmap of how each microbe acts and interacts with every other microbe to shape the dynamic changes of microbial communities under forest management. To demonstrate its utility, we analyze a soil microbiota data collected from a two-way longitudinal factorial experiment involving three stand densities and three levels of rainfall over a growing season in artificial plantations of a forest tree – larix (<em>Larix kaempferi</em>). We reconstruct the most sophisticated soil microbiota networks that code maximally informative microbial interactions and trace their dynamic trajectories across time, space, and environmental signals. By integrating GLMY homology theory, we dissect the topological architecture of these so-called omnidirectional networks and identify key microbial interaction pathways that play a pivotal role in mediating the structure and function of soil microbial communities. The statistical topological model described provides a systems tool for studying how microbial community assembly alters its structure, function and evolution under climate change.</p></div>","PeriodicalId":403,"journal":{"name":"Physics of Life Reviews","volume":"50 ","pages":"Pages 228-251"},"PeriodicalIF":13.7,"publicationDate":"2024-08-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142044526","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}