Journal of Asia-Pacific Biodiversity最新文献_第3页

Taxonomic review of the genus Octotemnus Mellié (Coleoptera: Tenebrionoidea: Ciidae) from Korea, with four unrecorded species associated with host fungi 韩国八爪蜂属（鞘翅目：拟步甲总科：姬蜂科）的分类学研究及与寄主真菌相关的4个未记录种

IF 0.6

Journal of Asia-Pacific Biodiversity Pub Date : 2025-01-27 DOI: 10.1016/j.japb.2024.12.006

Boo-Hee Jung , Jinbae Seung

引用次数: 0

The complete chloroplast genome sequence of Begonia jingxiensis (Begoniaceae): Characterization and phylogeny 靖西海棠（海棠科）叶绿体全基因组序列：特征与系统发育

IF 0.6

Journal of Asia-Pacific Biodiversity Pub Date : 2025-01-24 DOI: 10.1016/j.japb.2025.01.001

Qifeng Lu, Wenhua Luo

{"title":"The complete chloroplast genome sequence of Begonia jingxiensis (Begoniaceae): Characterization and phylogeny","authors":"Qifeng Lu, Wenhua Luo","doi":"10.1016/j.japb.2025.01.001","DOIUrl":"10.1016/j.japb.2025.01.001","url":null,"abstract":"<div><div><em>Begonia jingxiensis</em> D. Fang & Y. G. Wei is one of <em>Begonia</em> species which are distributed in limestone karsts of Guangxi, China, and have important ecological and horticultural value. Here, we sequenced, assembled, and annotated the complete chloroplast genome of <em>B. jingxiensis</em> via Illumina sequencing technology. The chloroplast genome of <em>B</em>. <em>jingxiensis</em> was 169,711 bp in size, displayed a typical circular quadripartite structure with a large single-copy region (76,471 bp) and a small single-copy region (18,154 bp), and was separated by two inverted repeat regions (IRa/IRb; 37,543 bp). The genome encoded 140 genes, including 90 protein-coding genes, 42 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Phylogenetic analysis based on the complete chloroplast genome from 22 species supported that <em>B</em>. <em>jingxiensis</em> was clustered with other sect. <em>Coelocentrum</em> species and was a sister to <em>Begonia umbraculifolia</em>. This study will provide valuable genetic information for further species identification, popular genetic, diversity studies, and phylogenetic studies in the genus of <em>Begonia</em>.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 478-482"},"PeriodicalIF":0.6,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Characterization of the complete chloroplast genome of medicinal species Duhaldea nervosa (Asteroideae, Asteraceae) and its phylogenetic analysis 药用植物星形蕨科（asteroidea, Asteraceae）全叶绿体基因组特征及其系统发育分析

IF 0.6

Journal of Asia-Pacific Biodiversity Pub Date : 2025-01-09 DOI: 10.1016/j.japb.2024.12.005

Zhimei Xing , Mingxue Ma , Liuwei Xu , Wei Kang , Shufan Zhou , Yuefei Wang , Abdullah , Xiaoxuan Tian

引用次数: 0

The complete chloroplast genome of Swertia obtusa (Gentianaceae) in Mongolia 蒙古獐牙菜（龙胆科）叶绿体全基因组

IF 0.7

Journal of Asia-Pacific Biodiversity Pub Date : 2024-12-24 DOI: 10.1016/j.japb.2024.12.001

Dashzeveg Oyuntsetseg , Nudkhuu Nyamgerel , Shukherdorj Baasanmunkh , Batlai Oyuntsetseg , Gun-Aajav Bayarmaa , Hyeok Jae Choi

引用次数: 0

Unveiling group dynamics and habitat utilization patterns of invasive sika deer (Cervus nippon) in Jeju Island, South Korea: Insights from camera trapping analysis 揭示济州岛入侵梅花鹿（Cervus nippon）的群体动态和栖息地利用模式：来自相机捕获分析的见解

IF 0.7

Journal of Asia-Pacific Biodiversity Pub Date : 2024-12-23 DOI: 10.1016/j.japb.2024.12.004

Maniram Banjade , Young-Hun Jeong , Do-Hun Lee , Hong-Shik Oh

{"title":"Unveiling group dynamics and habitat utilization patterns of invasive sika deer (Cervus nippon) in Jeju Island, South Korea: Insights from camera trapping analysis","authors":"Maniram Banjade , Young-Hun Jeong , Do-Hun Lee , Hong-Shik Oh","doi":"10.1016/j.japb.2024.12.004","DOIUrl":"10.1016/j.japb.2024.12.004","url":null,"abstract":"<div><div>Invasive species pose significant threats to native ecosystems and species, especially on islands with high rates of endemism and susceptibility. The introduction of the sika deer (<em>Cervus nippon</em>) to South Korea has negatively impacted its wild ecosystems and native species, including those on Jeju Island. However, there is limited knowledge of sika deer ecology to inform effective species management and policy decisions. To bridge this knowledge gap, we examined the group dynamics, with a focus on age-sex class structure, group size, and habitat utilization variation of sika deer on Jeju Island, South Korea, by analyzing three years of camera trap data. Our findings illuminate a slightly skewed sex ratio toward females, with adults and yearlings comprising the dominant age class. The annual relative abundance of each age class showed a single activity peak in May for both yearlings and adults, whereas a peak was observed in August for juveniles. Group sizes ranged from to 1–7 individuals, with a mean group size of 3.72 ± 1.25 individuals. Habitat utilization patterns differed by age class, with juvenile abundance escalating with increasing distance from the forest edge, whereas adult females were active close to human settlements. This study highlights the critical importance of controlling the adult female population as a direct strategy for mitigating conflicts arising from sika deer habitat utilization. By addressing the unique behavior and habitat preferences of sika deer, our findings provide valuable insights for informed decision-making, effective species management, and preservation of native ecosystems, particularly on Jeju Island.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 3","pages":"Pages 563-569"},"PeriodicalIF":0.7,"publicationDate":"2024-12-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144917227","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

The complete chloroplast genome and phylogenetic position of Cymbidium hartinahianum, an endemic and endangered orchid of Sumatra, Indonesia 印尼苏门答腊岛特有濒危兰花蕙兰（Cymbidium hartinahianum）叶绿体全基因组及系统发育定位

IF 0.6

Journal of Asia-Pacific Biodiversity Pub Date : 2024-12-21 DOI: 10.1016/j.japb.2024.12.003

Aninda Retno Utami Wibowo , Lina Susanti Juswara , Destri Destri , Diego Bogarín , Imam Bagus Nugroho , Izu Andry Fijridiyanto , Richa Kusuma Wati

{"title":"The complete chloroplast genome and phylogenetic position of Cymbidium hartinahianum, an endemic and endangered orchid of Sumatra, Indonesia","authors":"Aninda Retno Utami Wibowo , Lina Susanti Juswara , Destri Destri , Diego Bogarín , Imam Bagus Nugroho , Izu Andry Fijridiyanto , Richa Kusuma Wati","doi":"10.1016/j.japb.2024.12.003","DOIUrl":"10.1016/j.japb.2024.12.003","url":null,"abstract":"<div><div><em>Cymbidium</em> (Orchidaceae: Epidendroideae) includes species of significant horticultural and ecological importance, yet limited research exists on the distribution and phylogeny of <em>Cymbidium hartinahianum</em>, an orchid endemic to North Sumatra, Indonesia. Here, we present the complete plastid genome of <em>Cymbidium hartinahianum</em>. The whole plastid genome was sequenced using the Illumina platform, followed by a pipeline for plastome assembly, annotation, and visualization. The circular genome with a length of 150,370 bp possesses the typical quadripartite structure, consisting of a large single-copy (LSC) region of 84,189 bp, a small single-copy (SSC) region of 14,611 bp, and a pair of inverted repeats (IRs) regions of 25,785 bp. The plastid genome has a total GC content of 37.0%. Annotation revealed 148 gene species, including 96 protein-coding genes, 52 transfer RNA, and four ribosomal RNA (rRNA) genes. Bayesian and maximum likelihood phylogenetic analyses based on 52 plastomes confirmed that <em>C. hartinahianum</em> is sister to <em>C. floribundum</em> and belongs to the <em>Cymbidium</em> section <em>Floribundum</em>. This newly sequenced plastome data will be valuable for future <em>Cymbidium</em> phylogenomic and biogeographical studies. It also provides new molecular data for conservation efforts, including DNA barcoding to help prevent the illegal trade of this endangered orchid.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 457-462"},"PeriodicalIF":0.6,"publicationDate":"2024-12-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Diversity of invertebrates within the burrows of the streaked shearwater (Calonectris leucomelas) on Toshima Island, Izu Islands, Japan 日本伊豆群岛富岛条纹鹱（Calonectris leucomelas）洞穴内无脊椎动物的多样性

IF 0.7

Journal of Asia-Pacific Biodiversity Pub Date : 2024-12-21 DOI: 10.1016/j.japb.2024.12.002

Ryota Asano , Taito Kamata , Wataru Suzuki , Yuki Yamaguchi , Takashi Nomura

{"title":"Diversity of invertebrates within the burrows of the streaked shearwater (Calonectris leucomelas) on Toshima Island, Izu Islands, Japan","authors":"Ryota Asano , Taito Kamata , Wataru Suzuki , Yuki Yamaguchi , Takashi Nomura","doi":"10.1016/j.japb.2024.12.002","DOIUrl":"10.1016/j.japb.2024.12.002","url":null,"abstract":"<div><div>Bird nests form a unique environment that supports a diverse community of invertebrates, which is often overlooked in biodiversity studies. This study analyzed the invertebrate communities in the nests of <em>Calonectris leucomelas</em> on Toshima Island in the Izu Islands, Japan, confirming a total of 292 individuals. Insecta was the dominant class (49%), followed by Arachnida (28.1%), Crustacea (18.8%), Gastropoda (2.1%), Diplopoda (1.7%), and Oligochaeta (0.3%). Within the class Insecta, Coleoptera exhibited the highest abundance (97.2%), with <em>Trox niponensis</em> representing 82.5%. The suborder Metastigmata was identified within Arachnida. In Crustacea, Isopoda (85.5%) and <em>Spherillo dorsalis</em> (80%) were prevalent. Gastropoda included members of Stylommatophora and Architaenioglossa, whereas Diplopoda contained Polydesmida and an unidentified order. Oligochaeta was represented by a single species. Food habit classification revealed 40.4% as “Keratin feeders,” including <em>T. niponensis</em> adults and <em>Trox</em> larvae. “Detritivores” constituted 24%, “Blood-sucking” species in Arachnida accounted for 28.1%, and the “Other” category (1.7%) included various species. Additionally, 5.8% were classified as “Uncertain.” This comprehensive examination provides insights into the intricate relationships between <em>C. leucomelas</em> nests and the diverse invertebrate communities that influence nest utilization patterns and potentially impact nestling survival.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 3","pages":"Pages 557-562"},"PeriodicalIF":0.7,"publicationDate":"2024-12-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144917226","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Genetic diversity of freshwater shrimp Palaemon paucidens around Lake Biwa, Japan with the invasion of foreign genotypes 外来基因型入侵下琵琶湖淡水对虾的遗传多样性

IF 0.6

Journal of Asia-Pacific Biodiversity Pub Date : 2024-12-07 DOI: 10.1016/j.japb.2024.11.011

Yudai Aoki , Shotaro Tani , Chogo Ogasawara , Tadashi Imai , Pamela Afi Tettey , Al-Wahaibi Mohamed Khalfan , Hidetoshi Saito

{"title":"Genetic diversity of freshwater shrimp Palaemon paucidens around Lake Biwa, Japan with the invasion of foreign genotypes","authors":"Yudai Aoki , Shotaro Tani , Chogo Ogasawara , Tadashi Imai , Pamela Afi Tettey , Al-Wahaibi Mohamed Khalfan , Hidetoshi Saito","doi":"10.1016/j.japb.2024.11.011","DOIUrl":"10.1016/j.japb.2024.11.011","url":null,"abstract":"<div><div><em>Palaemon paucidens</em> is a freshwater shrimp widely distributed mainly in East Asia. Palaemonid shrimps are collected in Japan for fishing bait. They are also imported from South Korea and China. Currently, there are concerns about the negative impacts that the escape and establishment of these commercially transported individuals may have on local populations, such as on their genetic disturbance. In this study, molecular genetic analysis based on 16S rDNA of 229 individuals collected along the coast of Lake Biwa was conducted to clarify genetic population structure of the shrimp in the lake, which is a major harvesting area in Japan. A total of seven haplotypes (Hap1-7) were identified, and the most frequent haplotype (Hap1) was consistent with the haplogroup (A-I) determined in a previous study. In addition, another haplogroup (A-Biwa) consisting of four haplotypes (Hap2,5-7) was subsequently confirmed, and three (Hap5-7) of these haplotypes were identified for the first time in this study. The other two haplotypes (Hap3, 4) were presumed to be of foreign origin, probably from South Korea. There is strong concern that these foreign haplotypes will not only spread throughout Lake Biwa but will also spread to other parts of Japan via shrimp transport, causing synergistic genetic disturbance.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 399-405"},"PeriodicalIF":0.6,"publicationDate":"2024-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Four species of Ciidae (Coleoptera: Tenebrionoidea) from Jeju Island in Korea associated with the bracket fungus, Inonotus mikadoi (Basidiomycetes: Hymenochaetaceae) 韩国济州岛蚊科四种（鞘翅目：拟步甲总科）与托架菌Inonotus mikadoi的关联（担子菌目：膜毛菌科）

IF 0.6

Journal of Asia-Pacific Biodiversity Pub Date : 2024-12-04 DOI: 10.1016/j.japb.2024.11.012

Boo Hee Jung , Jinbae Seung

引用次数: 0

Colobopsis kapilashi sp. nov. (Hymenoptera: Formicidae) a new ant species from India with a key to the Indian species （膜翅目：蚁科）印度蚁一新种及印度蚁种检索键

IF 0.7

Journal of Asia-Pacific Biodiversity Pub Date : 2024-11-30 DOI: 10.1016/j.japb.2024.10.012

Tarun Dhadwal, Himender Bharti

引用次数: 0