Bernhard Dickoré , Almagul Kendirbaeva , Gerwin Kasperek , Helmut Freitag
{"title":"Neottia ovata (L.) Hartm. (Orchidaceae) new for Kyrgyzstan and a review of its distribution in Middle Asia","authors":"Bernhard Dickoré , Almagul Kendirbaeva , Gerwin Kasperek , Helmut Freitag","doi":"10.1016/j.japb.2025.02.002","DOIUrl":"10.1016/j.japb.2025.02.002","url":null,"abstract":"<div><div>This study presents the first confirmed record of <em>Neottia ovata</em> in Kyrgyzstan, clarifying that a previous record was based on misidentification. Habitat details are provided. A compilation of published or otherwise known records reveals a widely scattered distribution of <em>N. ovata</em> in Middle Asia. While neither long-distance dispersal nor recent range expansion can be excluded, our findings suggest a more ancient, persistent presence in the region as a relic, although the species may have been overlooked.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 483-489"},"PeriodicalIF":0.6,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139641","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Preliminary revision on the antlion genus Myrmeleon Linnaeus, 1767 (Neuroptera, Myrmeleontidae) known from India","authors":"Thangalazhi Balakrishnan Suryanarayanan , Levente Ábrahám , Chenthamarakshan Bijoy","doi":"10.1016/j.japb.2025.01.009","DOIUrl":"10.1016/j.japb.2025.01.009","url":null,"abstract":"<div><div>A taxonomic revision and re-examination of 21 species and one subspecies in <em>Myrmeleon</em> (Linnaeus, 1767) recorded from India was done by comparing it with the type specimens from various museums. Taxonomic changes including <em>Grocus fulvescens</em> Navás, 1934 (syn. n.), <em>Myrmeleon assamensis</em> Ghosh, 1984 (syn. n.), and <em>Tafanerus indicus</em> Navás, 1919 (syn. n.), are new junior synonyms of <em>Myrmeleon tenuipennis</em> Rambur, 1842. <em>Myrmeleon oberthuri</em> (Navás, 1923) (syn. n.), and <em>Myrmeleon marginicollis</em> (Gerstaecker, 1894) (syn. n.), are new junior synonyms of <em>Myrmeleon trivialis</em> (Gerstaecker, 1885). <em>Myrmeleon inanis</em> (Gerstaecker, 1894) is moved to new combination as <em>Baliga inanis</em> (Gerstaecker, 1894) (comb. n.). Meanwhile, <em>Baliga kashmirensis</em> (Hassan, Zheng & Liu, 2022) (syn. n.) is a new junior synonym of <em>Baliga inanis</em> (Gerstaecker, 1894). <em>Myrmeleon ermineus</em> (Fabricius, 1798) is moved to new combination as <em>Creoleon ermineus</em> (Fabricius, 1798) (comb. n.). <em>Creoleon griseus</em> (Klug in Ehrenberg, 1834) (syn. n.) is conspecific with <em>Creoleon ermineus</em> (Fabricius, 1798), still, the name <em>Creoleon griseus</em> is recommended because it is a widespread and well-known name in the literature. The status of <em>Myrmeleon mediatus</em> (Navás, 1931), <em>Myrmeleon periculosus</em> (Walker, 1853), <em>Myrmeleon punctatus</em> (Fabricius, 1787) and <em>Myrmeleon ursinus</em> (Fabricius, 1798) remains uncertain because their type specimens are missing or in bad condition. After this revision, <em>Myrmeleon</em> has only five valid species that occur in India. Moreover, the diagnosis, redescription, and key to the valid <em>Myrmeleon</em> species from India are provided.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 427-456"},"PeriodicalIF":0.6,"publicationDate":"2025-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139635","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Occupancy, population density, and activity patterns of endangered Sri Lankan leopard (Panthera pardus kotiya) in Kumana National Park, Sri Lanka","authors":"Pasindu Rodrigo , Chanima Anawarathna , Hiruni Weerasinghe , Ajith Kumara , Charani Gunathilake , Sachini Sigera , Pawan Wishmith , Vinuri Mendis , Tharanga Dhananjani , Wasantha Dissanayaka , Dilantha Samaranayaka , Dulan Jayasekara , Dharshani Mahaulpatha","doi":"10.1016/j.japb.2025.01.008","DOIUrl":"10.1016/j.japb.2025.01.008","url":null,"abstract":"<div><div>Being the apex predator of Sri Lanka’s forests, the endangered Sri Lankan leopard (<em>Panthera pardus kotiya</em>) plays a crucial role in maintaining the balance of natural ecosystems. In this study, we aimed to address the paucity of data related to one of the major leopard habitats of the country, Kumana National Park (KNP). This study investigates the spatial occupancy, population density, and activity patterns of the Sri Lankan leopard in KNP, Sri Lanka. Our findings reveal a higher concentration of leopards around water bodies and rocky areas, which provide shelter and support prey species such as wild buffalo and spotted deer. Using random encounter models (REM) and spatially explicit capture–recapture (SECR) analyses the population density of leopards was estimated. The study identified the eastern region of KNP as having one of the highest recorded leopard densities globally, with REM and SECR estimates showing statistically similar results of approximately 41 leopards per 100 km<sup>2</sup>. This high density is attributed to the availability of prey and habitat variability that supports the ecological needs of leopards. The study underscores the importance of KNP as a stronghold of leopards in southern Sri Lanka and the necessity of preserving its natural habitats.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 416-426"},"PeriodicalIF":0.6,"publicationDate":"2025-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139633","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Sung-Eun Cho , Yong Ho Kim , Dong-Hyeon Lee , Jinheung Lee , Keum Chul Shin , Jong Won Jo , Hae Jin Cho , Nam Kyu Kim
{"title":"Five species of macrofungi (Basidiomycota) new to Korea","authors":"Sung-Eun Cho , Yong Ho Kim , Dong-Hyeon Lee , Jinheung Lee , Keum Chul Shin , Jong Won Jo , Hae Jin Cho , Nam Kyu Kim","doi":"10.1016/j.japb.2025.01.003","DOIUrl":"10.1016/j.japb.2025.01.003","url":null,"abstract":"<div><div>South Korea has more than 3300 islands, each with a unique ecosystem and biodiversity distinct from the mainland. These islands are rich in biological resources of high conservation value, with new and previously undocumented species continually being discovered. However, research on fungal diversity and distribution in these island areas remains limited. Therefore, a mycological investigation was conducted in 2023 in three island areas in Southwestern Korea. Several samples of wild mushrooms were collected and subjected to DNA extraction, polymerase chain reaction, and phylogenetic analysis, resulting in the identification of five specimens from different species. Based on phylogenetic analysis and morphological examination, five species—<em>Agaricus deardorffensis, Agaricus melanocarpus, Boletellus aurocontextus,</em> and <em>Strobilomyces seminudus, Xeromphalina tenuipes</em>—were reported for the first time in Korea. This study presents the morphological descriptions, color photographs, and phylogenetic analyses of these species.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 406-410"},"PeriodicalIF":0.6,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139518","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Taxonomic review of the genus Neolethaeus Distant (Heteroptera: Lygaeoidea: Rhyparochromidae) from Korea","authors":"Geunho Jang , Sunghoon Jung","doi":"10.1016/j.japb.2025.01.005","DOIUrl":"10.1016/j.japb.2025.01.005","url":null,"abstract":"<div><div>In this study, we reviewed the genus <em>Neolethaeus</em> (Lygaeoidea: Rhyparochromidae) from Korea with a new record, <em>Neolethaeus lewisi</em> (Distant, 1883). We provide descriptions, diagnoses, and photographs of adult specimens and genitalia of the Korean species with a key to the species.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 411-415"},"PeriodicalIF":0.6,"publicationDate":"2025-02-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Taxonomic review of the genus Octotemnus Mellié (Coleoptera: Tenebrionoidea: Ciidae) from Korea, with four unrecorded species associated with host fungi","authors":"Boo-Hee Jung , Jinbae Seung","doi":"10.1016/j.japb.2024.12.006","DOIUrl":"10.1016/j.japb.2024.12.006","url":null,"abstract":"<div><div>The genus <em>Octotemnus</em> Mellié (Coleoptera: Tenebrionoidea: Ciidae) is taxonomically reviewed from Korea. We present six species of Korean <em>Octotemnus</em>, including four species new to Korea: <em>Octotemnus assimilis</em> Kobayashi & Sota, 2019, <em>Octotemnus aculeatus</em> Kawanabe, 2002, <em>Octotemnus crassus</em> Kobayashi & Sota, 2019, and <em>Octotemnus robustus</em> Kawanabe, 2002. Diagnoses for the four newly recorded species, a key to Korean <em>Octotemnus</em>, photographs for diagnostic characters of adult, line drawings of the male genitalia, and ecological information on their host fungi are provided.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 469-477"},"PeriodicalIF":0.6,"publicationDate":"2025-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome sequence of Begonia jingxiensis (Begoniaceae): Characterization and phylogeny","authors":"Qifeng Lu, Wenhua Luo","doi":"10.1016/j.japb.2025.01.001","DOIUrl":"10.1016/j.japb.2025.01.001","url":null,"abstract":"<div><div><em>Begonia jingxiensis</em> D. Fang & Y. G. Wei is one of <em>Begonia</em> species which are distributed in limestone karsts of Guangxi, China, and have important ecological and horticultural value. Here, we sequenced, assembled, and annotated the complete chloroplast genome of <em>B. jingxiensis</em> via Illumina sequencing technology. The chloroplast genome of <em>B</em>. <em>jingxiensis</em> was 169,711 bp in size, displayed a typical circular quadripartite structure with a large single-copy region (76,471 bp) and a small single-copy region (18,154 bp), and was separated by two inverted repeat regions (IRa/IRb; 37,543 bp). The genome encoded 140 genes, including 90 protein-coding genes, 42 transfer RNA (tRNA) genes, and eight ribosomal RNA (rRNA) genes. Phylogenetic analysis based on the complete chloroplast genome from 22 species supported that <em>B</em>. <em>jingxiensis</em> was clustered with other sect. <em>Coelocentrum</em> species and was a sister to <em>Begonia umbraculifolia</em>. This study will provide valuable genetic information for further species identification, popular genetic, diversity studies, and phylogenetic studies in the genus of <em>Begonia</em>.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 478-482"},"PeriodicalIF":0.6,"publicationDate":"2025-01-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139640","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Zhimei Xing , Mingxue Ma , Liuwei Xu , Wei Kang , Shufan Zhou , Yuefei Wang , Abdullah , Xiaoxuan Tian
{"title":"Characterization of the complete chloroplast genome of medicinal species Duhaldea nervosa (Asteroideae, Asteraceae) and its phylogenetic analysis","authors":"Zhimei Xing , Mingxue Ma , Liuwei Xu , Wei Kang , Shufan Zhou , Yuefei Wang , Abdullah , Xiaoxuan Tian","doi":"10.1016/j.japb.2024.12.005","DOIUrl":"10.1016/j.japb.2024.12.005","url":null,"abstract":"<div><div>Here, we <em>de novo</em> assembled and analyzed the chloroplast (cp) genome of <em>Duhaldea nervosa</em> (Asteroideae, Asteraceae) that showed a quadripartite structure with a total length of 150,916 base pairs (bps). It consisted of a pair of inverted repeats (IRa and IRb each of 24,927 bp), which separated the small single copy (18,188 bp) and large single copy (82,874 bp) regions. The genome contained 112 unique genes, including 4 ribosomal RNA, 79 protein-coding genes (CDS), and 29 transfer RNA genes. Phylogenetic analysis among 79 species revealed a sister relationship between <em>D. nervosa</em> and <em>Duhaldea cappa,</em> which lay within the tribe Inuleae. At the tribal level, our phylogenetic findings indicated a sister relationship of “Astereae with Anthemideae” and “Gnaphalieae with Calenduleae” and rooted by Senecioneae. This study enhanced the understanding of cp genome evolution and phylogeny within the Asteraceae family.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 463-468"},"PeriodicalIF":0.6,"publicationDate":"2025-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The complete chloroplast genome and phylogenetic position of Cymbidium hartinahianum, an endemic and endangered orchid of Sumatra, Indonesia","authors":"Aninda Retno Utami Wibowo , Lina Susanti Juswara , Destri Destri , Diego Bogarín , Imam Bagus Nugroho , Izu Andry Fijridiyanto , Richa Kusuma Wati","doi":"10.1016/j.japb.2024.12.003","DOIUrl":"10.1016/j.japb.2024.12.003","url":null,"abstract":"<div><div><em>Cymbidium</em> (Orchidaceae: Epidendroideae) includes species of significant horticultural and ecological importance, yet limited research exists on the distribution and phylogeny of <em>Cymbidium hartinahianum</em>, an orchid endemic to North Sumatra, Indonesia. Here, we present the complete plastid genome of <em>Cymbidium hartinahianum</em>. The whole plastid genome was sequenced using the Illumina platform, followed by a pipeline for plastome assembly, annotation, and visualization. The circular genome with a length of 150,370 bp possesses the typical quadripartite structure, consisting of a large single-copy (LSC) region of 84,189 bp, a small single-copy (SSC) region of 14,611 bp, and a pair of inverted repeats (IRs) regions of 25,785 bp. The plastid genome has a total GC content of 37.0%. Annotation revealed 148 gene species, including 96 protein-coding genes, 52 transfer RNA, and four ribosomal RNA (rRNA) genes. Bayesian and maximum likelihood phylogenetic analyses based on 52 plastomes confirmed that <em>C. hartinahianum</em> is sister to <em>C. floribundum</em> and belongs to the <em>Cymbidium</em> section <em>Floribundum</em>. This newly sequenced plastome data will be valuable for future <em>Cymbidium</em> phylogenomic and biogeographical studies. It also provides new molecular data for conservation efforts, including DNA barcoding to help prevent the illegal trade of this endangered orchid.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 457-462"},"PeriodicalIF":0.6,"publicationDate":"2024-12-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139638","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Genetic diversity of freshwater shrimp Palaemon paucidens around Lake Biwa, Japan with the invasion of foreign genotypes","authors":"Yudai Aoki , Shotaro Tani , Chogo Ogasawara , Tadashi Imai , Pamela Afi Tettey , Al-Wahaibi Mohamed Khalfan , Hidetoshi Saito","doi":"10.1016/j.japb.2024.11.011","DOIUrl":"10.1016/j.japb.2024.11.011","url":null,"abstract":"<div><div><em>Palaemon paucidens</em> is a freshwater shrimp widely distributed mainly in East Asia. Palaemonid shrimps are collected in Japan for fishing bait. They are also imported from South Korea and China. Currently, there are concerns about the negative impacts that the escape and establishment of these commercially transported individuals may have on local populations, such as on their genetic disturbance. In this study, molecular genetic analysis based on 16S rDNA of 229 individuals collected along the coast of Lake Biwa was conducted to clarify genetic population structure of the shrimp in the lake, which is a major harvesting area in Japan. A total of seven haplotypes (Hap1-7) were identified, and the most frequent haplotype (Hap1) was consistent with the haplogroup (A-I) determined in a previous study. In addition, another haplogroup (A-Biwa) consisting of four haplotypes (Hap2,5-7) was subsequently confirmed, and three (Hap5-7) of these haplotypes were identified for the first time in this study. The other two haplotypes (Hap3, 4) were presumed to be of foreign origin, probably from South Korea. There is strong concern that these foreign haplotypes will not only spread throughout Lake Biwa but will also spread to other parts of Japan via shrimp transport, causing synergistic genetic disturbance.</div></div>","PeriodicalId":37957,"journal":{"name":"Journal of Asia-Pacific Biodiversity","volume":"18 2","pages":"Pages 399-405"},"PeriodicalIF":0.6,"publicationDate":"2024-12-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144139517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}