Brain InformaticsPub Date : 2024-01-09DOI: 10.1186/s40708-023-00217-4
Sara Saponaro, Francesca Lizzi, Giacomo Serra, Francesca Mainas, Piernicola Oliva, Alessia Giuliano, Sara Calderoni, Alessandra Retico
{"title":"Deep learning based joint fusion approach to exploit anatomical and functional brain information in autism spectrum disorders.","authors":"Sara Saponaro, Francesca Lizzi, Giacomo Serra, Francesca Mainas, Piernicola Oliva, Alessia Giuliano, Sara Calderoni, Alessandra Retico","doi":"10.1186/s40708-023-00217-4","DOIUrl":"10.1186/s40708-023-00217-4","url":null,"abstract":"<p><strong>Background: </strong>The integration of the information encoded in multiparametric MRI images can enhance the performance of machine-learning classifiers. In this study, we investigate whether the combination of structural and functional MRI might improve the performances of a deep learning (DL) model trained to discriminate subjects with Autism Spectrum Disorders (ASD) with respect to typically developing controls (TD).</p><p><strong>Material and methods: </strong>We analyzed both structural and functional MRI brain scans publicly available within the ABIDE I and II data collections. We considered 1383 male subjects with age between 5 and 40 years, including 680 subjects with ASD and 703 TD from 35 different acquisition sites. We extracted morphometric and functional brain features from MRI scans with the Freesurfer and the CPAC analysis packages, respectively. Then, due to the multisite nature of the dataset, we implemented a data harmonization protocol. The ASD vs. TD classification was carried out with a multiple-input DL model, consisting in a neural network which generates a fixed-length feature representation of the data of each modality (FR-NN), and a Dense Neural Network for classification (C-NN). Specifically, we implemented a joint fusion approach to multiple source data integration. The main advantage of the latter is that the loss is propagated back to the FR-NN during the training, thus creating informative feature representations for each data modality. Then, a C-NN, with a number of layers and neurons per layer to be optimized during the model training, performs the ASD-TD discrimination. The performance was evaluated by computing the Area under the Receiver Operating Characteristic curve within a nested 10-fold cross-validation. The brain features that drive the DL classification were identified by the SHAP explainability framework.</p><p><strong>Results: </strong>The AUC values of 0.66±0.05 and of 0.76±0.04 were obtained in the ASD vs. TD discrimination when only structural or functional features are considered, respectively. The joint fusion approach led to an AUC of 0.78±0.04. The set of structural and functional connectivity features identified as the most important for the two-class discrimination supports the idea that brain changes tend to occur in individuals with ASD in regions belonging to the Default Mode Network and to the Social Brain.</p><p><strong>Conclusions: </strong>Our results demonstrate that the multimodal joint fusion approach outperforms the classification results obtained with data acquired by a single MRI modality as it efficiently exploits the complementarity of structural and functional brain information.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2024-01-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10776521/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139404636","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2024-01-08DOI: 10.1186/s40708-023-00216-5
Changhong Jing, Hongzhi Kuai, Hiroki Matsumoto, Tomoharu Yamaguchi, Iman Yi Liao, Shuqiang Wang
{"title":"Addiction-related brain networks identification via Graph Diffusion Reconstruction Network.","authors":"Changhong Jing, Hongzhi Kuai, Hiroki Matsumoto, Tomoharu Yamaguchi, Iman Yi Liao, Shuqiang Wang","doi":"10.1186/s40708-023-00216-5","DOIUrl":"10.1186/s40708-023-00216-5","url":null,"abstract":"<p><p>Functional magnetic resonance imaging (fMRI) provides insights into complex patterns of brain functional changes, making it a valuable tool for exploring addiction-related brain connectivity. However, effectively extracting addiction-related brain connectivity from fMRI data remains challenging due to the intricate and non-linear nature of brain connections. Therefore, this paper proposed the Graph Diffusion Reconstruction Network (GDRN), a novel framework designed to capture addiction-related brain connectivity from fMRI data acquired from addicted rats. The proposed GDRN incorporates a diffusion reconstruction module that effectively maintains the unity of data distribution by reconstructing the training samples, thereby enhancing the model's ability to reconstruct nicotine addiction-related brain networks. Experimental evaluations conducted on a nicotine addiction rat dataset demonstrate that the proposed GDRN effectively explores nicotine addiction-related brain connectivity. The findings suggest that the GDRN holds promise for uncovering and understanding the complex neural mechanisms underlying addiction using fMRI data.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"11 1","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2024-01-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10774517/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139379124","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-12-05DOI: 10.1186/s40708-023-00212-9
Loren Koçillari, Marco Celotto, Nikolas A Francis, Shoutik Mukherjee, Behtash Babadi, Patrick O Kanold, Stefano Panzeri
{"title":"Behavioural relevance of redundant and synergistic stimulus information between functionally connected neurons in mouse auditory cortex.","authors":"Loren Koçillari, Marco Celotto, Nikolas A Francis, Shoutik Mukherjee, Behtash Babadi, Patrick O Kanold, Stefano Panzeri","doi":"10.1186/s40708-023-00212-9","DOIUrl":"10.1186/s40708-023-00212-9","url":null,"abstract":"<p><p>Measures of functional connectivity have played a central role in advancing our understanding of how information is transmitted and processed within the brain. Traditionally, these studies have focused on identifying redundant functional connectivity, which involves determining when activity is similar across different sites or neurons. However, recent research has highlighted the importance of also identifying synergistic connectivity-that is, connectivity that gives rise to information not contained in either site or neuron alone. Here, we measured redundant and synergistic functional connectivity between neurons in the mouse primary auditory cortex during a sound discrimination task. Specifically, we measured directed functional connectivity between neurons simultaneously recorded with calcium imaging. We used Granger Causality as a functional connectivity measure. We then used Partial Information Decomposition to quantify the amount of redundant and synergistic information about the presented sound that is carried by functionally connected or functionally unconnected pairs of neurons. We found that functionally connected pairs present proportionally more redundant information and proportionally less synergistic information about sound than unconnected pairs, suggesting that their functional connectivity is primarily redundant. Further, synergy and redundancy coexisted both when mice made correct or incorrect perceptual discriminations. However, redundancy was much higher (both in absolute terms and in proportion to the total information available in neuron pairs) in correct behavioural choices compared to incorrect ones, whereas synergy was higher in absolute terms but lower in relative terms in correct than in incorrect behavioural choices. Moreover, the proportion of redundancy reliably predicted perceptual discriminations, with the proportion of synergy adding no extra predictive power. These results suggest a crucial contribution of redundancy to correct perceptual discriminations, possibly due to the advantage it offers for information propagation, and also suggest a role of synergy in enhancing information level during correct discriminations.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"34"},"PeriodicalIF":0.0,"publicationDate":"2023-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10697912/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138488632","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-12-03DOI: 10.1186/s40708-023-00213-8
Puskar Bhattarai, Ahmed Taha, Bhavin Soni, Deepa S Thakuri, Erin Ritter, Ganesh B Chand
{"title":"Predicting cognitive dysfunction and regional hubs using Braak staging amyloid-beta biomarkers and machine learning.","authors":"Puskar Bhattarai, Ahmed Taha, Bhavin Soni, Deepa S Thakuri, Erin Ritter, Ganesh B Chand","doi":"10.1186/s40708-023-00213-8","DOIUrl":"10.1186/s40708-023-00213-8","url":null,"abstract":"<p><p>Mild cognitive impairment (MCI) is a transitional stage between normal aging and early Alzheimer's disease (AD). The presence of extracellular amyloid-beta (Aβ) in Braak regions suggests a connection with cognitive dysfunction in MCI/AD. Investigating the multivariate predictive relationships between regional Aβ biomarkers and cognitive function can aid in the early detection and prevention of AD. We introduced machine learning approaches to estimate cognitive dysfunction from regional Aβ biomarkers and identify the Aβ-related dominant brain regions involved with cognitive impairment. We employed Aβ biomarkers and cognitive measurements from the same individuals to train support vector regression (SVR) and artificial neural network (ANN) models and predict cognitive performance solely based on Aβ biomarkers on the test set. To identify Aβ-related dominant brain regions involved in cognitive prediction, we built the local interpretable model-agnostic explanations (LIME) model. We found elevated Aβ in MCI compared to controls and a stronger correlation between Aβ and cognition, particularly in Braak stages III-IV and V-VII (p < 0.05) biomarkers. Both SVR and ANN, especially ANN, showed strong predictive relationships between regional Aβ biomarkers and cognitive impairment (p < 0.05). LIME integrated with ANN showed that the parahippocampal gyrus, inferior temporal gyrus, and hippocampus were the most decisive Braak regions for predicting cognitive decline. Consistent with previous findings, this new approach suggests relationships between Aβ biomarkers and cognitive impairment. The proposed analytical framework can estimate cognitive impairment from Braak staging Aβ biomarkers and delineate the dominant brain regions collectively involved in AD pathophysiology.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"33"},"PeriodicalIF":0.0,"publicationDate":"2023-12-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10694120/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138478795","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-11-25DOI: 10.1186/s40708-023-00210-x
Giacomo Serra, Francesca Mainas, Bruno Golosio, Alessandra Retico, Piernicola Oliva
{"title":"Effect of data harmonization of multicentric dataset in ASD/TD classification.","authors":"Giacomo Serra, Francesca Mainas, Bruno Golosio, Alessandra Retico, Piernicola Oliva","doi":"10.1186/s40708-023-00210-x","DOIUrl":"10.1186/s40708-023-00210-x","url":null,"abstract":"<p><p>Machine Learning (ML) is nowadays an essential tool in the analysis of Magnetic Resonance Imaging (MRI) data, in particular in the identification of brain correlates in neurological and neurodevelopmental disorders. ML requires datasets of appropriate size for training, which in neuroimaging are typically obtained collecting data from multiple acquisition centers. However, analyzing large multicentric datasets can introduce bias due to differences between acquisition centers. ComBat harmonization is commonly used to address batch effects, but it can lead to data leakage when the entire dataset is used to estimate model parameters. In this study, structural and functional MRI data from the Autism Brain Imaging Data Exchange (ABIDE) collection were used to classify subjects with Autism Spectrum Disorders (ASD) compared to Typical Developing controls (TD). We compared the classical approach (external harmonization) in which harmonization is performed before train/test split, with an harmonization calculated only on the train set (internal harmonization), and with the dataset with no harmonization. The results showed that harmonization using the whole dataset achieved higher discrimination performance, while non-harmonized data and harmonization using only the train set showed similar results, for both structural and connectivity features. We also showed that the higher performances of the external harmonization are not due to larger size of the sample for the estimation of the model and hence these improved performance with the entire dataset may be ascribed to data leakage. In order to prevent this leakage, it is recommended to define the harmonization model solely using the train set.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"32"},"PeriodicalIF":0.0,"publicationDate":"2023-11-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10676338/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"138441425","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-11-18DOI: 10.1186/s40708-023-00211-w
Alessia Sarica, Federica Aracri, Maria Giovanna Bianco, Fulvia Arcuri, Andrea Quattrone, Aldo Quattrone
{"title":"Explainability of random survival forests in predicting conversion risk from mild cognitive impairment to Alzheimer's disease.","authors":"Alessia Sarica, Federica Aracri, Maria Giovanna Bianco, Fulvia Arcuri, Andrea Quattrone, Aldo Quattrone","doi":"10.1186/s40708-023-00211-w","DOIUrl":"10.1186/s40708-023-00211-w","url":null,"abstract":"<p><p>Random Survival Forests (RSF) has recently showed better performance than statistical survival methods as Cox proportional hazard (CPH) in predicting conversion risk from mild cognitive impairment (MCI) to Alzheimer's disease (AD). However, RSF application in real-world clinical setting is still limited due to its black-box nature.For this reason, we aimed at providing a comprehensive study of RSF explainability with SHapley Additive exPlanations (SHAP) on biomarkers of stable and progressive patients (sMCI and pMCI) from Alzheimer's Disease Neuroimaging Initiative. We evaluated three global explanations-RSF feature importance, permutation importance and SHAP importance-and we quantitatively compared them with Rank-Biased Overlap (RBO). Moreover, we assessed whether multicollinearity among variables may perturb SHAP outcome. Lastly, we stratified pMCI test patients in high, medium and low risk grade, to investigate individual SHAP explanation of one pMCI patient per risk group.We confirmed that RSF had higher accuracy (0.890) than CPH (0.819), and its stability and robustness was demonstrated by high overlap (RBO > 90%) between feature rankings within first eight features. SHAP local explanations with and without correlated variables had no substantial difference, showing that multicollinearity did not alter the model. FDG, ABETA42 and HCI were the first important features in global explanations, with the highest contribution also in local explanation. FAQ, mPACCdigit, mPACCtrailsB and RAVLT immediate had the highest influence among all clinical and neuropsychological assessments in increasing progression risk, as particularly evident in pMCI patients' individual explanation. In conclusion, our findings suggest that RSF represents a useful tool to support clinicians in estimating conversion-to-AD risk and that SHAP explainer boosts its clinical utility with intelligible and interpretable individual outcomes that highlights key features associated with AD prognosis.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"31"},"PeriodicalIF":0.0,"publicationDate":"2023-11-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10657350/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136399652","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-11-10DOI: 10.1186/s40708-023-00208-5
Sharan J Prakash, Kimberly M Van Auken, David P Hill, Paul W Sternberg
{"title":"Semantic representation of neural circuit knowledge in Caenorhabditis elegans.","authors":"Sharan J Prakash, Kimberly M Van Auken, David P Hill, Paul W Sternberg","doi":"10.1186/s40708-023-00208-5","DOIUrl":"10.1186/s40708-023-00208-5","url":null,"abstract":"<p><p>In modern biology, new knowledge is generated quickly, making it challenging for researchers to efficiently acquire and synthesise new information from the large volume of primary publications. To address this problem, computational approaches that generate machine-readable representations of scientific findings in the form of knowledge graphs have been developed. These representations can integrate different types of experimental data from multiple papers and biological knowledge bases in a unifying data model, providing a complementary method to manual review for interacting with published knowledge. The Gene Ontology Consortium (GOC) has created a semantic modelling framework that extends individual functional gene annotations to structured descriptions of causal networks representing biological processes (Gene Ontology-Causal Activity Modelling, or GO-CAM). In this study, we explored whether the GO-CAM framework could represent knowledge of the causal relationships between environmental inputs, neural circuits and behavior in the model nematode C. elegans [C. elegans Neural-Circuit Causal Activity Modelling (CeN-CAM)]. We found that, given extensions to several relevant ontologies, a wide variety of author statements from the literature about the neural circuit basis of egg-laying and carbon dioxide (CO<sub>2</sub>) avoidance behaviors could be faithfully represented with CeN-CAM. Through this process, we were able to generate generic data models for several categories of experimental results. We also discuss how semantic modelling may be used to functionally annotate the C. elegans connectome. Thus, Gene Ontology-based semantic modelling has the potential to support various machine-readable representations of neurobiological knowledge.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"30"},"PeriodicalIF":0.0,"publicationDate":"2023-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10638142/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"72015645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-11-04DOI: 10.1186/s40708-023-00209-4
Lena Kopnarski, Laura Lippert, Julian Rudisch, Claudia Voelcker-Rehage
{"title":"Predicting object properties based on movement kinematics.","authors":"Lena Kopnarski, Laura Lippert, Julian Rudisch, Claudia Voelcker-Rehage","doi":"10.1186/s40708-023-00209-4","DOIUrl":"https://doi.org/10.1186/s40708-023-00209-4","url":null,"abstract":"<p><p>In order to grasp and transport an object, grip and load forces must be scaled according to the object's properties (such as weight). To select the appropriate grip and load forces, the object weight is estimated based on experience or, in the case of robots, usually by use of image recognition. We propose a new approach that makes a robot's weight estimation less dependent on prior learning and, thereby, allows it to successfully grasp a wider variety of objects. This study evaluates whether it is feasible to predict an object's weight class in a replacement task based on the time series of upper body angles of the active arm or on object velocity profiles. Furthermore, we wanted to investigate how prediction accuracy is affected by (i) the length of the time series and (ii) different cross-validation (CV) procedures. To this end, we recorded and analyzed the movement kinematics of 12 participants during a replacement task. The participants' kinematics were recorded by an optical motion tracking system while transporting an object, 80 times in total from varying starting positions to a predefined end position on a table. The object's weight was modified (made lighter and heavier) without changing the object's visual appearance. Throughout the experiment, the object's weight (light/heavy) was randomly changed without the participant's knowledge. To predict the object's weight class, we used a discrete cosine transform to smooth and compress the time series and a support vector machine for supervised learning from the achieved discrete cosine transform parameters. Results showed good prediction accuracy (up to [Formula: see text], depending on the CV procedure and the length of the time series). Even at the beginning of a movement (after only 300 ms), we were able to predict the object weight reliably (within a classification rate of [Formula: see text]).</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"29"},"PeriodicalIF":0.0,"publicationDate":"2023-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10625504/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71487017","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-10-31DOI: 10.1186/s40708-023-00206-7
Abinaya Gopalakrishnan, Raj Gururajan, Revathi Venkataraman, Xujuan Zhou, Ka Chan Ching, Arul Saravanan, Maitrayee Sen
{"title":"Attribute Selection Hybrid Network Model for risk factors analysis of postpartum depression using Social media.","authors":"Abinaya Gopalakrishnan, Raj Gururajan, Revathi Venkataraman, Xujuan Zhou, Ka Chan Ching, Arul Saravanan, Maitrayee Sen","doi":"10.1186/s40708-023-00206-7","DOIUrl":"https://doi.org/10.1186/s40708-023-00206-7","url":null,"abstract":"<p><strong>Background and objective: </strong>Postpartum Depression (PPD) is a frequently ignored birth-related consequence. Social network analysis can be used to address this issue because social media network serves as a platform for their users to communicate with their friends and share their opinions, photos, and videos, which reflect their moods, feelings, and sentiments. In this work, the depression of delivered mothers is identified using the PPD score and segregated into control and depressed groups. Recently, to detect depression, deep learning methods have played a vital role. However, these methods still do not clarify why some people have been identified as depressed.</p><p><strong>Methods: </strong>We have developed Attribute Selection Hybrid Network (ASHN) to detect the postpartum depression diagnoses framework. Later analysis of the post of mothers who have been confirmed with the score calculated by the experts of the field using physiological questionnaire score. The model works on the analysis of the attributes of the negative Facebook posts for Depressed user Diagnosis, which is a large general forum. This framework explains the process of analyzing posts containing Sentiment, depressive symptoms, and reflective thinking and suggests psycho-linguistic and stylistic attributes of depression in posts.</p><p><strong>Results: </strong>The experimental results show that ASHN works well and is easy to understand. Here, four attribute networks based on psychological studies were used to analyze the different parts of posts by depressed users. The results of the experiments show the extraction of psycho-linguistic markers-based attributes, the recording of assessment metrics including Precision, Recall and F1 score and visualization of those attributes were used title-wise as well as words wise and compared with daily life, depression and postpartum depressed people using Word cloud. Furthermore, a comparison to a reference with Baseline and ASHN model was carried out.</p><p><strong>Conclusions: </strong>Attribute Selection Hybrid Network (ASHN) mimics the importance of attributes in social media posts to predict depressed mothers. Those mothers were anticipated to be depressed by answering a questionnaire designed by domain experts with prior knowledge of depression. This work will help researchers look at social media posts to find useful evidence for other depressive symptoms.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"28"},"PeriodicalIF":0.0,"publicationDate":"2023-10-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10618142/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"71427639","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Brain InformaticsPub Date : 2023-10-10DOI: 10.1186/s40708-023-00205-8
Tianhua Chen
{"title":"Investigating the mental health of university students during the COVID-19 pandemic in a UK university: a machine learning approach using feature permutation importance.","authors":"Tianhua Chen","doi":"10.1186/s40708-023-00205-8","DOIUrl":"10.1186/s40708-023-00205-8","url":null,"abstract":"<p><p>Mental wellbeing of university students is a growing concern that has been worsening during the COVID-19 pandemic. Numerous studies have gathered empirical data to explore the mental health impact of the pandemic on university students and investigate factors associated with higher levels of distress. While the online questionnaire survey has been a prevalent means to collect data, regression analysis has been observed a dominating approach to interpret and understand the impact of independent factors on a mental wellbeing state of interest. Drawbacks such as sensitivity to outliers, ineffectiveness in case of multiple predictors highly correlated may limit the use of regression in complex scenarios. These observations motivate the underlying research to propose alternative computational methods to investigate the questionnaire data. Inspired by recent machine learning advances, this research aims to construct a framework through feature permutation importance to empower the application of a variety of machine learning algorithms that originate from different computational frameworks and learning theories, including algorithms that cannot directly provide exact numerical contributions of individual factors. This would enable to explore quantitative impact of predictors in influencing student mental wellbeing from multiple perspectives as a result of using different algorithms, thus complementing the single view due to the dominant use of regression. Applying the proposed approach over an online survey in a UK university, the analysis suggests the past medical record and wellbeing history and the experience of adversity contribute significantly to mental wellbeing states; and the frequent communication with families and friends to keep good relationship as well as regular exercise are generally contributing to improved mental wellbeing.</p>","PeriodicalId":37465,"journal":{"name":"Brain Informatics","volume":"10 1","pages":"27"},"PeriodicalIF":0.0,"publicationDate":"2023-10-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10564685/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41183816","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}