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Reduction in vertical transmission rate of bean common mosaic virus in bee-pollinated common bean plants. 降低蜜蜂授粉蚕豆植物中蚕豆花叶病毒的垂直传播率。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-28 DOI: 10.1186/s12985-024-02407-w
Netsai M Mhlanga, Adrienne E Pate, Warren Arinaitwe, John P Carr, Alex M Murphy
{"title":"Reduction in vertical transmission rate of bean common mosaic virus in bee-pollinated common bean plants.","authors":"Netsai M Mhlanga, Adrienne E Pate, Warren Arinaitwe, John P Carr, Alex M Murphy","doi":"10.1186/s12985-024-02407-w","DOIUrl":"https://doi.org/10.1186/s12985-024-02407-w","url":null,"abstract":"<p><p>Vertical transmission, the transfer of pathogens across generations, is a critical mechanism for the persistence of plant viruses. The transmission mechanisms are diverse, involving direct invasion through the suspensor and virus entry into developing gametes before achieving symplastic isolation. Despite the progress in understanding vertical virus transmission, the environmental factors influencing this process remain largely unexplored. We investigated the complex interplay between vertical transmission of plant viruses and pollination dynamics, focusing on common bean (Phaseolus vulgaris). The intricate relationship between plants and pollinators, especially bees, is essential for global ecosystems and crop productivity. We explored the impact of virus infection on seed transmission rates, with a particular emphasis on bean common mosaic virus (BCMV), bean common mosaic necrosis virus (BCMNV), and cucumber mosaic virus (CMV). Under controlled growth conditions, BCMNV exhibited the highest seed transmission rate, followed by BCMV and CMV. Notably, in the field, bee-pollinated BCMV-infected plants showed a reduced transmission rate compared to self-pollinated plants. This highlights the influence of pollinators on virus transmission dynamics. The findings demonstrate the virus-specific nature of seed transmission and underscore the importance of considering environmental factors, such as pollination, in understanding and managing plant virus spread.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11214251/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141471091","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correction: ZNF148 inhibits HBV replication by downregulating RXRα transcription. 更正:ZNF148 通过下调 RXRα 转录抑制 HBV 复制。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-25 DOI: 10.1186/s12985-024-02420-z
Xinyan Yao, Kexin Xu, Nana Tao, Shengtao Cheng, Huajian Chen, Dapeng Zhang, Minli Yang, Ming Tan, Haibo Yu, Peng Chen, Zongzhu Zhan, Siyi He, Ranran Li, Chunduo Wang, Daiqing Wu, Jihua Ren
{"title":"Correction: ZNF148 inhibits HBV replication by downregulating RXRα transcription.","authors":"Xinyan Yao, Kexin Xu, Nana Tao, Shengtao Cheng, Huajian Chen, Dapeng Zhang, Minli Yang, Ming Tan, Haibo Yu, Peng Chen, Zongzhu Zhan, Siyi He, Ranran Li, Chunduo Wang, Daiqing Wu, Jihua Ren","doi":"10.1186/s12985-024-02420-z","DOIUrl":"10.1186/s12985-024-02420-z","url":null,"abstract":"","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11200815/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141451643","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Discovery and characterization of novel jeilongviruses in wild rodents from Hubei, China. 在中国湖北野生啮齿动物中发现新型吉隆病毒并确定其特征。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-25 DOI: 10.1186/s12985-024-02417-8
Min Gan, Bing Hu, Qingwen Ding, Nailou Zhang, Jinbo Wei, Tao Nie, Kun Cai, Zhenhua Zheng
{"title":"Discovery and characterization of novel jeilongviruses in wild rodents from Hubei, China.","authors":"Min Gan, Bing Hu, Qingwen Ding, Nailou Zhang, Jinbo Wei, Tao Nie, Kun Cai, Zhenhua Zheng","doi":"10.1186/s12985-024-02417-8","DOIUrl":"10.1186/s12985-024-02417-8","url":null,"abstract":"<p><p>The genus Jeilongvirus comprises non-segmented negative-stranded RNA viruses that are classified within the Paramyxoviridae family by phylogeny. Jeilongviruses are found in various reservoirs, including rodents and bats. Rodents are typical viral reservoirs with diverse spectra and zoonotic potential. Little is currently known about jeilongviruses in rodents from central China. The study utilized high-throughput and Sanger sequencing to obtain jeilongvirus genomes, including those of two novel strains (HBJZ120/CHN/2021 (17,468 nt) and HBJZ157/CHN/2021 (19,143 nt)) and three known viruses (HBXN18/CHN/2021 (19,212 nt), HBJZ10/CHN/2021 (19,700 nt), HBJM106/CHN/2021 (18,871 nt)), which were characterized by genome structure, identity matrix, and phylogenetic analysis. Jeilongviruses were classified into three subclades based on their topology, phylogeny, and hosts. Based on the amino acid sequence identities and phylogenetic analysis of the L protein, HBJZ120/CHN/2021 and HBJZ157/CHN/2021 were found to be strains rather than novel species. Additionally, according to specific polymerase chain reaction screening, the positive percentage of Beilong virus in Hubei was 6.38%, suggesting that Beilong virus, belonging to the Jeilongvirus genus, is likely to be widespread in wild rodents. The identification of novel strains further elucidated the genomic diversity of jeilongviruses. Additionally, the prevalence of jeilongviruses in Hubei, China, was profiled, establishing a foundation for the surveillance and early warning of emerging paramyxoviruses.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11201313/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141451644","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Impact of subtype C-specific amino acid variants on HIV-1 Tat-TAR interaction: insights from molecular modelling and dynamics. C 亚型特异性氨基酸变体对 HIV-1 Tat-TAR 相互作用的影响:分子建模和动力学的启示。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-25 DOI: 10.1186/s12985-024-02419-6
Piwai T Gotora, Keaghan Brown, Darius R Martin, Rencia van der Sluis, Ruben Cloete, Monray E Williams
{"title":"Impact of subtype C-specific amino acid variants on HIV-1 Tat-TAR interaction: insights from molecular modelling and dynamics.","authors":"Piwai T Gotora, Keaghan Brown, Darius R Martin, Rencia van der Sluis, Ruben Cloete, Monray E Williams","doi":"10.1186/s12985-024-02419-6","DOIUrl":"10.1186/s12985-024-02419-6","url":null,"abstract":"<p><strong>Background: </strong>HIV-1 produces Tat, a crucial protein for transcription, viral replication, and CNS neurotoxicity. Tat interacts with TAR, enhancing HIV reverse transcription. Subtype C Tat variants (C31S, R57S, Q63E) are associated with reduced transactivation and neurovirulence compared to subtype B. However, their precise impact on Tat-TAR binding is unclear. This study investigates how these substitutions affect Tat-TAR interaction.</p><p><strong>Methods: </strong>We utilized molecular modelling techniques, including MODELLER, to produce precise three-dimensional structures of HIV-1 Tat protein variants. We utilized Tat subtype B as the reference or wild type, and generated Tat variants to mirror those amino acid variants found in Tat subtype C. Subtype C-specific amino acid substitutions were selected based on their role in the neuropathogenesis of HIV-1. Subsequently, we conducted molecular docking of each Tat protein variant to TAR using HDOCK, followed by molecular dynamic simulations.</p><p><strong>Results: </strong>Molecular docking results indicated that Tat subtype B (TatWt) showed the highest affinity for the TAR element (-262.07), followed by TatC31S (-261.61), TatQ63E (-256.43), TatC31S/R57S/Q63E (-238.92), and TatR57S (-222.24). However, binding free energy analysis showed higher affinities for single variants TatQ63E (-349.2 ± 10.4 kcal/mol) and TatR57S (-290.0 ± 9.6 kcal/mol) compared to TatWt (-247.9 ± 27.7 kcal/mol), while TatC31S and TatC31S/R57SQ/63E showed lower values. Interactions over the protein trajectory were also higher for TatQ63E and TatR57S compared to TatWt, TatC31S, and TatC31S/R57SQ/63E, suggesting that modifying amino acids within the Arginine/Glutamine-rich region notably affects TAR interaction. Single amino acid mutations TatR57S and TatQ63E had a significant impact, while TatC31S had minimal effect. Introducing single amino acid variants from TatWt to a more representative Tat subtype C (TatC31S/R57SQ/63E) resulted in lower predicted binding affinity, consistent with previous findings.</p><p><strong>Conclusions: </strong>These identified amino acid positions likely contribute significantly to Tat-TAR interaction and the differential pathogenesis and neuropathogenesis observed between subtype B and subtype C. Additional experimental investigations should prioritize exploring the influence of these amino acid signatures on TAR binding to gain a comprehensive understanding of their impact on viral transactivation, potentially identifying them as therapeutic targets.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11202254/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141451645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chronic active Epstein-Barr virus infection with reinfection of SARS-CoV-2: a case report. 慢性活动性 Epstein-Barr 病毒感染合并 SARS-CoV-2 再感染:病例报告。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-24 DOI: 10.1186/s12985-024-02418-7
Hongmei Wu, Li Liu, Jialin Qu, Chunrui Wang, Xiaofeng Shi, Yu Lei
{"title":"Chronic active Epstein-Barr virus infection with reinfection of SARS-CoV-2: a case report.","authors":"Hongmei Wu, Li Liu, Jialin Qu, Chunrui Wang, Xiaofeng Shi, Yu Lei","doi":"10.1186/s12985-024-02418-7","DOIUrl":"10.1186/s12985-024-02418-7","url":null,"abstract":"<p><p>We describe the case of a 57-year-old male with jaundice, abdominal distension and fatigue. He was diagnosed as chronic active Epstein-Barr virus infection (CAEBV) due to intermittent elevated liver enzymes, hepatosplenomegaly and pancytopenia, with persistent positive of EBV biomarkers in blood and also positive in liver tissue. The patient was reinfected by SARS-CoV-2 within 2 months companied with CAEBV. The patient's second infection with SARS-CoV-2 led to the aggravated liver dysfunction with pneumonia and re-admission. After receiving symptomatic treatment, the patient showed significantly improvement of symptoms with partially restoration of liver function. After discharge, the patient's health status continued to deteriorate and eventually died. The instances of SARS-CoV-2 co-infection with the original chronic virus are not uncommon, but the exact mechanism of EBV and SARS-CoV-2 coinfection and the relationship between them are still unclear. Since co-infection of SARS-CoV-2 with original chronic virus might affect each other and lead disease aggravated and complicated, it is necessary to differentiate in the diagnosis of disease and it is important to be aware of the re-infection signs of SARS-CoV-2 in people with chronic virus infection diseases, as well as the risk of co-infection of SARS-CoV-2 with other viruses.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194969/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141443419","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of hematological parameters in asymptomatic and non-severe cases of Omicron variant infection. 血液学参数在无症状和非重症奥米克龙变异感染病例中的作用。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-24 DOI: 10.1186/s12985-024-02414-x
Suqin Ben, Fengying Gao, Ziheng Xu, Rulin Zhang, Xingyi Zhang, Ning Wang, Min Zhang, Lili Hou
{"title":"The role of hematological parameters in asymptomatic and non-severe cases of Omicron variant infection.","authors":"Suqin Ben, Fengying Gao, Ziheng Xu, Rulin Zhang, Xingyi Zhang, Ning Wang, Min Zhang, Lili Hou","doi":"10.1186/s12985-024-02414-x","DOIUrl":"10.1186/s12985-024-02414-x","url":null,"abstract":"<p><strong>Background: </strong>Omicron variants are currently the predominant circulating lineage worldwide and most cases are mild or asymptomatic. The Omicron variant is characterized by high transmissibility and immune evasion. Early identification of Omicron cases in clinical settings is crucial for controlling its spread. Previous studies have indicated that changes in hematological parameters can be used to predict the severity of coronavirus disease 2019 (COVID-19). However, the role of hematological parameters in non-severe and asymptomatic cases remains unknown. This study aimed to investigate the role of hematological parameters in non-severe and asymptomatic Omicron variant infections.</p><p><strong>Methods: </strong>Hematological parameters and results were analyzed and compared in symptomatic (n = 356) and asymptomatic (n = 171) groups respectively, and between these two groups with positive COVID-19 tests. The utility of hematological parameters for predicting positive COVID-19 tests was analyzed using receiver operating characteristic curves.</p><p><strong>Results: </strong>Individuals with non-severe cases exhibited decreased levels of platelets, lymphocytes, eosinophils, basophils, lymphocytes (%), eosinophils (%), and basophils (%), while exhibiting elevated counts of monocytes, neutrophils (%), monocytes (%), neutrophil-to-lymphocyte ratio, platelet-to-lymphocyte ratio (PLR), and C-reactive protein (CRP) when compared to suspected cases or asymptomatic carriers. In asymptomatic patients, positive carriers had lower leukocyte, neutrophil, and lymphocyte counts but higher monocyte, monocyte (%), PLR, and CRP levels than negative carriers. Basophil counts combined with lymphocytes or the PLR demonstrated a more significant predictive value in screening non-severe cases earlier compared to other parameters. The combined assessment of the monocyte (%) and the PLR had the highest area under the curve for diagnosing asymptomatic carriers.</p><p><strong>Conclusions: </strong>Circulating basophils, alone or in combination with other hematological parameters, may be used as efficient biomarkers for early screening of non-severe Omicron cases.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11197332/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141447155","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular surveillance for dengue serotypes among the population living in Moyen-Ogooué province, Gabon; evidence of the presence of dengue serotype 1. 对加蓬中奥古埃省居民登革热血清型的分子监测;登革热血清型 1 存在的证据。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-20 DOI: 10.1186/s12985-024-02406-x
Rodrigue Bikangui, Soulemane Parkouda, Ayong More, Marien Veraldy Magossou Mbadinga, Ismael Piérrick Mikelet Boussoukou, Georgelin Nguema Ondo, Anne Marie Mouina Nkoma, Rafiou Adamou, Yabo Josiane Honkpehedji, Elie Gide Rossatanga, Yuri Ushijima, Haruka Abe, Bertrand Lell, Jean Claude Dejon-Agobé, Jiro Yasuda, Ayola Akim Adegnika
{"title":"Molecular surveillance for dengue serotypes among the population living in Moyen-Ogooué province, Gabon; evidence of the presence of dengue serotype 1.","authors":"Rodrigue Bikangui, Soulemane Parkouda, Ayong More, Marien Veraldy Magossou Mbadinga, Ismael Piérrick Mikelet Boussoukou, Georgelin Nguema Ondo, Anne Marie Mouina Nkoma, Rafiou Adamou, Yabo Josiane Honkpehedji, Elie Gide Rossatanga, Yuri Ushijima, Haruka Abe, Bertrand Lell, Jean Claude Dejon-Agobé, Jiro Yasuda, Ayola Akim Adegnika","doi":"10.1186/s12985-024-02406-x","DOIUrl":"10.1186/s12985-024-02406-x","url":null,"abstract":"<p><strong>Background: </strong>Despite dengue virus (DENV) outbreak in Gabon a decade ago, less is known on the potential circulation of DENV serotypes in the country. Previous studies conducted in some areas of the country, are limited to hospital-based surveys which reported the presence of some cases of serotype 2 and 3 seven years ago and more recently the serotype 1. As further investigation, we extend the survey to the community of Moyen Ogooué region with the aim to assess the presence of the dengue virus serotypes, additionally to characterize chikungunya (CHIKV) infection and describe the symptomatology associated with infections.</p><p><strong>Method: </strong>A cross-sectional survey was conducted from April 2020 to March 2021. The study included participants of both sexes and any age one year and above, with fever or history of fever in the past seven days until blood collection. Eligible volunteers were clinically examined, and blood sample was collected for the detection of DENV and CHIKV using RT-qPCR. Positive samples were selected for the target sequencing.</p><p><strong>Results: </strong>A total of 579 volunteers were included. Their mean age (SD) was 20 (20) years with 55% of them being female. Four cases of DENV infection were diagnosed giving a prevalence of 0.7% (95%CI: 0.2-1.8) in our cohort while no case of CHIKV was detected. The common symptoms and signs presented by the DENV cases included fatigue, arthralgia myalgia, cough, and loss of appetite. DENV-1was the only virus detected by RT-qPCR.</p><p><strong>Conclusion: </strong>Our results confirm the presence of active dengue infection in the region, particularly DENV-1, and could suggest the decline of DENV-2 and DENV-3. Continuous surveillance remains paramount to comprehensively describe the extent of dengue serotypes distribution in the Moyen-Ogooué region of Gabon.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11191199/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141432882","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The prevalence and genotype distribution of high-risk human papillomaviruses among women in Xianning, China. 中国咸宁妇女中高危人乳头瘤病毒的流行率和基因型分布。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-18 DOI: 10.1186/s12985-024-02413-y
Bin Qiu, Na Jiang, Jinpeng Jiang, Xuebao Mao, Xiuhong Wang
{"title":"The prevalence and genotype distribution of high-risk human papillomaviruses among women in Xianning, China.","authors":"Bin Qiu, Na Jiang, Jinpeng Jiang, Xuebao Mao, Xiuhong Wang","doi":"10.1186/s12985-024-02413-y","DOIUrl":"10.1186/s12985-024-02413-y","url":null,"abstract":"<p><strong>Background: </strong>The persistent infection of high-risk Human papillomavirus(HPV) is considered the main cause of cervical intraepithelial neoplasia and cervical cancer. But various cervical lesions caused by HPV infection can be properly prevented by timely vaccination. However, the distribution of HPV genotypes varies geographically.</p><p><strong>Methods: </strong>Retrospective analysis of high-risk HPV prevalence of 16,150 women from 2020 to 2022 in xianning of China. HPV genotyping was performed using a PCR-RDB Kit that can detect 18 high-risk HPV genotypes recommended by China's National Medical Products Administration. The prevalence of 18 high-risk HPV genotypes and their relationship with cervical lesions as well as vaccine efficacy were analyzed.</p><p><strong>Results: </strong>A total of 2431 women were confirmed to have different types of high-risk HPV infections. The overall positive rate reached 15.05%(2431/16,150). The most prevalent high-risk HPV genotypes were HPV52, 16, 58, 53, and 51. The prevalence of high-risk HPV reached peak at age ≤ 20(20.95%) and age ≥ 61(20.56%). The most prevalent high-risk HPV genotypes were HPV16, 58, 18, 33 and 52 in cervical cancer cases, HPV16, 52, 58, 33 and 18 in CIN2/3 cases, and HPV52, 58, 16, 53 and 18 in CIN1 cases, respectively.</p><p><strong>Conclusion: </strong>HPV16, 58 and 18 are the most dangerous and carcinogenic genotypes in xianning, China. Conducting epidemiological investigations on high-risk HPV has significant clinical value in guiding HPV vaccination work.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11186159/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141421166","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of novel Epstein-Barr virus-derived antigen formulations for monitoring virus-specific T cells in pediatric patients with infectious mononucleosis. 评估用于监测传染性单核细胞增多症儿科患者病毒特异性 T 细胞的新型 Epstein-Barr 病毒衍生抗原制剂。
IF 4.8 3区 医学
Virology Journal Pub Date : 2024-06-14 DOI: 10.1186/s12985-024-02411-0
Franziska Fischer, Johannes Mücke, Louisa Werny, Katrin Gerrer, Lorenz Mihatsch, Stefanie Zehetmaier, Isa Riedel, Jonas Geisperger, Maren Bodenhausen, Lina Schulte-Hillen, Dieter Hoffmann, Ulrike Protzer, Josef Mautner, Uta Behrends, Tanja Bauer, Nina Körber
{"title":"Evaluation of novel Epstein-Barr virus-derived antigen formulations for monitoring virus-specific T cells in pediatric patients with infectious mononucleosis.","authors":"Franziska Fischer, Johannes Mücke, Louisa Werny, Katrin Gerrer, Lorenz Mihatsch, Stefanie Zehetmaier, Isa Riedel, Jonas Geisperger, Maren Bodenhausen, Lina Schulte-Hillen, Dieter Hoffmann, Ulrike Protzer, Josef Mautner, Uta Behrends, Tanja Bauer, Nina Körber","doi":"10.1186/s12985-024-02411-0","DOIUrl":"10.1186/s12985-024-02411-0","url":null,"abstract":"<p><strong>Background: </strong>Infection with the Epstein-Barr virus (EBV) elicits a complex T-cell response against a broad range of viral proteins. Hence, identifying potential differences in the cellular immune response of patients with different EBV-associated diseases or different courses of the same disorder requires interrogation of a maximum number of EBV antigens. Here, we tested three novel EBV-derived antigen formulations for their ability to reactivate virus-specific T cells ex vivo in patients with EBV-associated infectious mononucleosis (IM).</p><p><strong>Methods: </strong>We comparatively analyzed EBV-specific CD4+ and CD8+ T-cell responses to three EBV-derived antigen formulations in 20 pediatric patients during the early phase of IM: T-activated EBV proteins (BZLF1, EBNA3A) and EBV-like particles (EB-VLP), both able to induce CD4+ and CD8+ T-cell responses ex vivo, as well as an EBV-derived peptide pool (PP) covering 94 well-characterized CD8+ T-cell epitopes. We assessed the specificity, magnitude, kinetics, and functional characteristics of EBV-specific immune responses at two sequential time points (v1 and v2) within the first six weeks after IM symptom onset (T<sub>onset</sub>).</p><p><strong>Results: </strong>All three tested EBV-derived antigen formulations enabled the detection of EBV-reactive T cells during the early phase of IM without prior T-cell expansion in vitro. EBV-reactive CD4+ and CD8+ T cells were mainly mono-functional (CD4+: mean 64.92%, range 56.15-71.71%; CD8+: mean 58.55%, range 11.79-85.22%) within the first two weeks after symptom onset (v1) with IFN-γ and TNF-secreting cells representing the majority of mono-functional EBV-reactive T cells. By contrast, PP-reactive CD8+ T cells were primarily bi-functional (>60% at v1 and v2), produced IFN-γ and TNF and had more tri-functional than mono-functional components. We observed a moderate correlation between viral load and EBNA3A, EB-VLP, and PP-reactive CD8+ T cells (r<sub>s</sub> = 0.345, 0.418, and 0.356, respectively) within the first two weeks after T<sub>onset</sub>, but no correlation with the number of detectable EBV-reactive CD4+ T cells.</p><p><strong>Conclusions: </strong>All three EBV-derived antigen formulations represent innovative and generic recall antigens suitable for monitoring EBV-specific T-cell responses ex vivo. Their combined use facilitates a thorough analysis of EBV-specific T-cell immunity and allows the identification of functional T-cell signatures linked to disease development and severity.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.8,"publicationDate":"2024-06-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11179387/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141321728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Humoral immunity to SARS-CoV-2 in kidney transplant recipients and dialysis patients: IgA and IgG patterns unraveled after SARS-CoV-2 infection and vaccination. 肾移植受者和透析患者对 SARS-CoV-2 的体液免疫:感染 SARS-CoV-2 和接种疫苗后 IgA 和 IgG 模式的解密。
IF 4 3区 医学
Virology Journal Pub Date : 2024-06-13 DOI: 10.1186/s12985-024-02410-1
Caroline De Bouver, Jason Bouziotis, Veerle P W M Wijtvliet, Kevin K Ariën, Joachim Mariën, Leo Heyndrickx, Marie M Couttenye, Hans J W de Fijter, Fabienne Mestrez, Serge Treille, Olivier Mat, Frederic Collart, Sabine D Allard, Lies Vingerhoets, Pieter Moons, Daniel Abramowicz, Benedicte Y De Winter, Lissa Pipeleers, Karl Martin Wissing, Kristien J Ledeganck
{"title":"Humoral immunity to SARS-CoV-2 in kidney transplant recipients and dialysis patients: IgA and IgG patterns unraveled after SARS-CoV-2 infection and vaccination.","authors":"Caroline De Bouver, Jason Bouziotis, Veerle P W M Wijtvliet, Kevin K Ariën, Joachim Mariën, Leo Heyndrickx, Marie M Couttenye, Hans J W de Fijter, Fabienne Mestrez, Serge Treille, Olivier Mat, Frederic Collart, Sabine D Allard, Lies Vingerhoets, Pieter Moons, Daniel Abramowicz, Benedicte Y De Winter, Lissa Pipeleers, Karl Martin Wissing, Kristien J Ledeganck","doi":"10.1186/s12985-024-02410-1","DOIUrl":"10.1186/s12985-024-02410-1","url":null,"abstract":"<p><strong>Background: </strong>Infection with SARS-CoV-2 in high-risk groups such as kidney transplant and dialysis patients is shown to be associated with a more serious course of the disease. Four years after the start of the COVID-19 pandemic, crucial knowledge on the immune responses in these patient groups is still lacking. Therefore, this study aimed at investigating the humoral immune response after a SARS-CoV-2 infection compared to vaccination as well as the evolution of immunoglobulins over time.</p><p><strong>Methods: </strong>Kidney transplant recipients, patients on haemodialysis or on peritoneal dialysis and healthy controls were included in this longitudinal multicenter study. SARS-CoV-2 anti-RBD, anti-NP and anti-S1S2 immunoglobulin G (IgG) and A (IgA) as well as the neutralizing antibody capacity were measured.</p><p><strong>Results: </strong>Kidney transplant recipients had a significantly better humoral response to SARS-CoV-2 after infection (86.4%) than after a two-dose mRNA vaccination (55.8%) while seroconversion was comparable in patients on haemodialysis after infection (95.8%) versus vaccination (89.4%). In individuals without prior COVID-19, the IgG levels after vaccination were significantly lower in kidney transplant recipients when compared to all other groups. However, the IgA titres remained the highest in this patient group at each time point, both after infection and vaccination. A history COVID-19 was associated with higher antibody levels after double-dose vaccination in all patient categories and, while decreasing, titres remained high six months after double-dose vaccination.</p><p><strong>Conclusion: </strong>Kidney transplant recipients had a more robust humoral response to SARS-CoV-2 following infection compared to a two-dose mRNA vaccination, while patients on haemodialysis exhibited comparable seroconversion rates. Notably, individuals with prior COVID-19 exhibited higher IgG levels in response to vaccination. Hybrid immunity is thus the best possible defence against severe COVID-19 disease and seems also to hold up for these populations. Next, it is not clear whether the higher IgA levels in the kidney transplant recipients is beneficial for neutralizing SARS-CoV-2 or if it is a sign of disease severity.</p>","PeriodicalId":23616,"journal":{"name":"Virology Journal","volume":null,"pages":null},"PeriodicalIF":4.0,"publicationDate":"2024-06-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11170792/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141318398","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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