Seminars in cell & developmental biology最新文献

{"title":"Reframing research on evolutionary novelty and co-option: Character identity mechanisms versus deep homology","authors":"James DiFrisco ,&nbsp;Günter P. Wagner ,&nbsp;Alan C. Love","doi":"10.1016/j.semcdb.2022.03.030","DOIUrl":"10.1016/j.semcdb.2022.03.030","url":null,"abstract":"<div><p>A central topic in research at the intersection of development and evolution is the origin of novel traits. Despite progress on understanding how developmental mechanisms underlie patterns of diversity in the history of life, the problem of novelty continues to challenge researchers. Here we argue that research on evolutionary novelty and the closely associated phenomenon of co-option can be reframed fruitfully by: (1) specifying a conceptual model of mechanisms that underwrite character identity, (2) providing a richer and more empirically precise notion of co-option that goes beyond common appeals to “deep homology”, and (3) attending to the nature of experimental interventions that can determine whether and how the co-option of identity mechanisms can help to explain novel character origins. This reframing has the potential to channel future investigation to make substantive progress on the problem of evolutionary novelty. To illustrate this potential, we apply our reframing to two case studies: treehopper helmets and beetle horns.</p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"145 ","pages":"Pages 3-12"},"PeriodicalIF":7.3,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9674311","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Untangling the relationship between developmental and evolutionary integration","authors":"Kory M. Evans,&nbsp;Thaddaeus J. Buser,&nbsp;Olivier Larouche,&nbsp;Matthew A. Kolmann","doi":"10.1016/j.semcdb.2022.05.026","DOIUrl":"10.1016/j.semcdb.2022.05.026","url":null,"abstract":"<div><p>Patterns of integration and modularity among organismal traits are prevalent across the tree of life, and at multiple scales of biological organization. Over the past several decades, researchers have studied these patterns at the developmental, and evolutionary levels. While their work has identified the potential drivers of these patterns at different scales, there appears to be a lack of consensus on the relationship between developmental and evolutionary integration. Here, we review and summarize key studies and build a framework to describe the conceptual relationship between these patterns across organismal scales and illustrate how, and why some of these studies may have yielded seemingly conflicting outcomes. We find that among studies that analyze patterns of integration and modularity using morphological data, the lack of consensus may stem in part from the difficulty of fully disentangling the developmental and functional causes of integration. Nonetheless, in some empirical systems, patterns of evolutionary modularity have been found to coincide with expectations based on developmental processes, suggesting that in some circumstances, developmental modularity may translate to evolutionary modularity. We also advance an extension to Hallgrímsson et al.’s palimpsest model to describe how patterns of trait modularity may shift across different evolutionary scales. Finally, we also propose some directions for future research which will hopefully be useful for investigators interested in these issues.</p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"145 ","pages":"Pages 22-27"},"PeriodicalIF":7.3,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9689047","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Deep conservation and co-option of programmed cell death facilitates evolution of alternative phenotypes at multiple biological levels","authors":"Lisa Hanna,&nbsp;Ehab Abouheif","doi":"10.1016/j.semcdb.2022.05.024","DOIUrl":"10.1016/j.semcdb.2022.05.024","url":null,"abstract":"<div><p><span>Alternative phenotypes, such as polyphenisms and sexual dimorphisms, are widespread in nature and appear at all levels of biological organization, from genes and cells to morphology and behavior. Yet, our understanding of the mechanisms through which alternative phenotypes develop and how they evolve remains understudied. In this review, we explore the association between alternative phenotypes and programmed cell death, a mechanism responsible for the elimination of superfluous cells during development. We discuss the ancient origins and deep conservation of programmed cell death (its function, forms and underlying core regulatory gene networks), and propose that it was co-opted repeatedly to generate alternative phenotypes at the level of cells, tissues, organs, external morphology, and even individuals. We review several examples from across the </span>tree of life to explore the conditions under which programmed cell death is likely to facilitate the evolution of alternative phenotypes.</p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"145 ","pages":"Pages 28-41"},"PeriodicalIF":7.3,"publicationDate":"2023-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9689046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Balance between the cell viability and death in 3D","authors":"Angela C. Debruyne ,&nbsp;Irina A. Okkelman ,&nbsp;Ruslan I. Dmitriev","doi":"10.1016/j.semcdb.2022.09.005","DOIUrl":"10.1016/j.semcdb.2022.09.005","url":null,"abstract":"<div><p><span>Cell death is a phenomenon, frequently perceived as an absolute event for cell, tissue and the organ. However, the rising popularity and complexity of such 3D multicellular ‘tissue building blocks’ as heterocellular spheroids, organoids, and ‘assembloids’ prompts to revise the definition and quantification of </span>cell viability<span> and death. It raises several questions on the overall viability of all the cells within 3D volume and on choosing the appropriate, continuous, and non-destructive viability assay enabling for a single-cell analysis. In this review, we look at cell viability and cell death modalities with attention to the intrinsic features of such 3D models as spheroids, organoids, and bioprints. Furthermore, we look at emerging and promising methodologies, which can help define and understand the balance between cell viability and death in dynamic and complex 3D environments. We conclude that the recent innovations in biofabrication, biosensor probe development, and fluorescence microscopy can help answer these questions.</span></p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"144 ","pages":"Pages 55-66"},"PeriodicalIF":7.3,"publicationDate":"2023-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9195914","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Strategic use of organoids and organs-on-chip as biomimetic tools","authors":"Anderson K. Santos ,&nbsp;Sérgio Scalzo ,&nbsp;Raysa T.V. de Souza ,&nbsp;Pedro H.G. Santana ,&nbsp;Bruno L. Marques ,&nbsp;Lucas F. Oliveira ,&nbsp;Daniel M. Filho ,&nbsp;Alexandre Hiroaki Kihara ,&nbsp;Helton da Costa Santiago ,&nbsp;Ricardo C. Parreira ,&nbsp;Alexander Birbrair ,&nbsp;Henning Ulrich ,&nbsp;Rodrigo R. Resende","doi":"10.1016/j.semcdb.2022.09.010","DOIUrl":"10.1016/j.semcdb.2022.09.010","url":null,"abstract":"<div><p>Organoid development and organ-on-a-chip are technologies based on differentiating stem cells, forming 3D multicellular structures resembling organs and tissues in vivo. Hence, both can be strategically used for disease modeling, drug screening, and host-pathogen studies. In this context, this review highlights the significant advancements in the area, providing technical approaches to organoids and organ-on-a-chip that best imitate in vivo physiology.</p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"144 ","pages":"Pages 3-10"},"PeriodicalIF":7.3,"publicationDate":"2023-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9563679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Deconstructing organs: From decellularized organs, and stem cells niche to constructed organoids and engineering new organs","authors":"Rodrigo R. Resende","doi":"10.1016/j.semcdb.2022.12.003","DOIUrl":"10.1016/j.semcdb.2022.12.003","url":null,"abstract":"","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"144 ","pages":"Pages 1-2"},"PeriodicalIF":7.3,"publicationDate":"2023-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9189965","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The impact of antidepressants on human neurodevelopment: Brain organoids as experimental tools","authors":"Luciana Simões Rafagnin Marinho ,&nbsp;Gabrielly Maria Denadai Chiarantin ,&nbsp;Juliane Midori Ikebara ,&nbsp;Débora Sterzeck Cardoso ,&nbsp;Théo Henrique de Lima-Vasconcellos ,&nbsp;Guilherme Shigueto Vilar Higa ,&nbsp;Mariana Sacrini Ayres Ferraz ,&nbsp;Roberto De Pasquale ,&nbsp;Silvia Honda Takada ,&nbsp;Fabio Papes ,&nbsp;Alysson R. Muotri ,&nbsp;Alexandre Hiroaki Kihara","doi":"10.1016/j.semcdb.2022.09.007","DOIUrl":"10.1016/j.semcdb.2022.09.007","url":null,"abstract":"<div><p><span>The use of antidepressants during pregnancy benefits the mother's well-being, but the effects of such substances on neurodevelopment remain poorly understood. Moreover, the consequences of early exposure to antidepressants may not be immediately apparent at birth. </span><em>In utero</em><span><span><span> exposure to selective serotonin reuptake inhibitors<span><span><span> (SSRIs) has been related to developmental abnormalities, including a reduced white matter volume. Several reports have observed an increased incidence of autism spectrum disorder (ASD) and attention deficit hyperactivity disorder (ADHD) after prenatal exposure to SSRIs such as sertraline, the most widely prescribed SSRI. The advent of human-induced pluripotent stem cell (hiPSC) methods and assays now offers appropriate tools to test the consequences of such compounds for neurodevelopment in vitro. In particular, hiPSCs can be used to generate cerebral organoids – self-organized structures that recapitulate the morphology and complex physiology of the developing human brain, overcoming the limitations found in 2D cell culture and experimental </span>animal models for testing </span>drug efficacy and side effects. For example, single-cell </span></span>RNA sequencing (scRNA-seq) and electrophysiological measurements on organoids can be used to evaluate the impact of antidepressants on the </span>transcriptome<span><span><span> and neuronal activity signatures in developing neurons. While the analysis of large-scale </span>transcriptomic data depends on dimensionality reduction methods, </span>electrophysiological recordings rely on temporal data series to discriminate statistical characteristics of neuronal activity, allowing for the rigorous analysis of the effects of antidepressants and other molecules that affect the developing nervous system, especially when applied in combination with relevant human cellular models such as brain organoids.</span></span></p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"144 ","pages":"Pages 67-76"},"PeriodicalIF":7.3,"publicationDate":"2023-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9195911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Application of stem cells in engineered vascular graft and vascularized organs","authors":"Shanlan Zhao ,&nbsp;Qiao Zhang ,&nbsp;Min Liu ,&nbsp;Jiahui Du ,&nbsp;Tingting Wang ,&nbsp;Yanzhao Li ,&nbsp;Wen Zeng","doi":"10.1016/j.semcdb.2022.10.003","DOIUrl":"10.1016/j.semcdb.2022.10.003","url":null,"abstract":"<div><p>Recent studies report that stem cell therapies<span> have been applied successfully to patients, This has increased anticipations that this regeneration strategy could be a potential method to treat a wide range of intractable diseases some day. Stem cells offer new prospects for the treatment of incurable diseases and for tissue regeneration<span> and repairation because of their unique biological properties. Angiogenesis<span> a key process in tissue regeneration and repairation. Vascularization of organs is one of the main challenges hindering the clinical application of engineered tissues. Efficient production of engineered vascular grafts and vascularized organs is of critical importance for regenerative medicine. In this review, we focus on the types of stem cells that are widely used in tissue engineering and regeneration, as well as their application of these stem cells in the construction of tissue-engineered vascular grafts and vascularization of tissue-engineered organs.</span></span></span></p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"144 ","pages":"Pages 31-40"},"PeriodicalIF":7.3,"publicationDate":"2023-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9194933","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Organoids as a novel tool in modelling infectious diseases","authors":"Lucas Felipe de Oliveira ,&nbsp;Daniel Mendes Filho ,&nbsp;Bruno Lemes Marques ,&nbsp;Giovana Figueiredo Maciel ,&nbsp;Ricardo Cambraia Parreira ,&nbsp;José Rodrigues do Carmo Neto ,&nbsp;Priscilla Elias Ferreira Da Silva ,&nbsp;Rhanoica Oliveira Guerra ,&nbsp;Marcos Vinicius da Silva ,&nbsp;Helton da Costa Santiago ,&nbsp;Alexander Birbrair ,&nbsp;Alexandre H. Kihara ,&nbsp;Valdo José Dias da Silva ,&nbsp;Talita Glaser ,&nbsp;Rodrigo R. Resende ,&nbsp;Henning Ulrich","doi":"10.1016/j.semcdb.2022.09.003","DOIUrl":"10.1016/j.semcdb.2022.09.003","url":null,"abstract":"<div><p>Infectious diseases worldwide affect human health and have important societal impacts. A better understanding of infectious diseases is urgently needed. In vitro and in vivo infection models have brought notable contributions to the current knowledge of these diseases. Organoids are multicellular culture systems resembling tissue architecture and function, recapitulating many characteristics of human disease and elucidating mechanisms of host–infectious agent interactions in the respiratory and gastrointestinal systems, the central nervous system and the skin. Here, we discuss the applicability of the organoid technology for modeling pathogenesis, host response and features, which can be explored for the development of preventive and therapeutic treatments.</p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"144 ","pages":"Pages 87-96"},"PeriodicalIF":7.3,"publicationDate":"2023-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9194366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Regulatory mechanisms of stem cell differentiation: Biotechnological applications for neurogenesis","authors":"Bruno L. Marques ,&nbsp;Giovana Figueiredo Maciel ,&nbsp;Marcello R. Brito Júnior ,&nbsp;Lucas D. Dias ,&nbsp;Sérgio Scalzo ,&nbsp;Anderson K. Santos ,&nbsp;Alexandre Hiroaki Kihara ,&nbsp;Helton da Costa Santiago ,&nbsp;Ricardo C. Parreira ,&nbsp;Alexander Birbrair ,&nbsp;Rodrigo R. Resende","doi":"10.1016/j.semcdb.2022.09.014","DOIUrl":"10.1016/j.semcdb.2022.09.014","url":null,"abstract":"<div><p>The world population’s life expectancy is growing, and neurodegenerative disorders common in old age require more efficient therapies. In this context, neural stem cells (NSCs) are imperative for the development and maintenance of the functioning of the nervous system and have broad therapeutic applicability for neurodegenerative diseases. Therefore, knowing all the mechanisms that govern the self-renewal, differentiation, and cell signaling<span><span> of NSC is necessary. This review will address some of these aspects, including the role of growth and transcription factors, epigenetic modulators, </span>microRNAs<span>, and extracellular matrix components. Furthermore, differentiation and transdifferentiation processes will be addressed as therapeutic strategies showing their significance for stem cell-based therapy.</span></span></p></div>","PeriodicalId":21735,"journal":{"name":"Seminars in cell & developmental biology","volume":"144 ","pages":"Pages 11-19"},"PeriodicalIF":7.3,"publicationDate":"2023-07-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9194503","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}