Scientific Data最新文献_第3页

The FLAIR-GG federated network of FAIR germplasm data resources.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04243-7

Alberto Cámara Ballesteros, Elena Aguayo Jara, Evrykleia Sofia Verykaki, Germán Pastor Del Olmo, Santiago Moreno Vázquez, Elena Torres, Mark D Wilkinson

引用次数: 0

A global product of 150-m urban building height based on spaceborne lidar.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04237-5

Xiao Ma, Guang Zheng, Chi Xu, L Monika Moskal, Peng Gong, Qinghua Guo, Huabing Huang, Xuecao Li, Xinlian Liang, Yong Pang, Cheng Wang, Huan Xie, Bailang Yu, Bo Zhao, Yuyu Zhou

{"title":"A global product of 150-m urban building height based on spaceborne lidar.","authors":"Xiao Ma, Guang Zheng, Chi Xu, L Monika Moskal, Peng Gong, Qinghua Guo, Huabing Huang, Xuecao Li, Xinlian Liang, Yong Pang, Cheng Wang, Huan Xie, Bailang Yu, Bo Zhao, Yuyu Zhou","doi":"10.1038/s41597-024-04237-5","DOIUrl":"https://doi.org/10.1038/s41597-024-04237-5","url":null,"abstract":"Urban building height, as a fundamental 3D urban structural feature, has far-reaching applications. However, creating readily available datasets of recent urban building heights with fine spatial resolutions and global coverage remains a challenging task. Here, we provide a 150-m global urban building heights dataset around 2020 by combining the spaceborne lidar (Global Ecosystem Dynamics Investigation, GEDI), multi-sourced data (Landsat-8, Sentinel-2, and Sentinel-1), and topographic data. The validation results revealed that the GEDI-estimated building height samples were effective compared to the reference data (Pearson's r = 0.81, RMSE = 3.58 m). The mapping product also demonstrated good performance, as indicated by its strong correlation with the reference data (Pearson's r = 0.71, RMSE = 4.73 m). Compared with the currently existing datasets, it holds the ability to provide a spatial resolution (150 m) with a great level of inherent details about the spatial heterogeneity and flexibility of updating using the GEDI samples as inputs. This product will boost future urban studies across many fields, including environmental, ecological, and social sciences.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1387"},"PeriodicalIF":5.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142855157","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A root nodule microbiome sequencing data set from red alder (Alnus rubra Bong.).

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04131-0

Callum J Bell, Johnny A Sena, Diego A Fajardo, Evan M Lavelle, Michael A Costa, Barrington Herman, Laurence B Davin, Norman G Lewis, Alison M Berry

{"title":"A root nodule microbiome sequencing data set from red alder (Alnus rubra Bong.).","authors":"Callum J Bell, Johnny A Sena, Diego A Fajardo, Evan M Lavelle, Michael A Costa, Barrington Herman, Laurence B Davin, Norman G Lewis, Alison M Berry","doi":"10.1038/s41597-024-04131-0","DOIUrl":"https://doi.org/10.1038/s41597-024-04131-0","url":null,"abstract":"There have been frequent reports of more than one strain of the nitrogen-fixing symbiont, Frankia, in the same root nodule of plants in the genus Alnus, but quantitative assessments of their relative contributions have not been made to date. Neither has the diversity of other microbes, having potential functional roles in symbiosis, been systematically evaluated. Alnus rubra root nodule microbiota were studied using Illumina short read sequencing and kmer-based read classification. Single end 76 bp sequencing was done to a median depth of 96 million reads per sample. Reads were assigned to taxa using KrakenUniq, with taxon abundances being estimated using its companion program Bracken. This was the first high resolution study of Alnus root nodules using next generation sequencing (NGS), quantifying multiple Cluster 1 A Frankia strains in single nodules, and in some cases, a Cluster 4 strain. Root nodules were found to contain diverse bacteria, including several genera containing species known to have growth-promoting effects. Evidence was found for partitioning of some bacterial strains in older versus younger lobes.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1343"},"PeriodicalIF":5.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142855178","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Chromosome-level genome assembly for three geographical stocks of large yellow croaker (Larimichthys crocea).

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04126-x

Xintong Chen, Lingwei Miao, Qian He, Qiaozhen Ke, Fei Pu, Ning Li, Tao Zhou, Peng Xu

引用次数: 0

Chromosome-scale genome assembly and de novo annotation of Alopecurus aequalis.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04222-y

Jonathan Wright, Kendall Baker, Tom Barker, Leah Catchpole, Alex Durrant, Fiona Fraser, Karim Gharbi, Christian Harrison, Suzanne Henderson, Naomi Irish, Gemy Kaithakottil, Ilia J Leitch, Jun Li, Sacha Lucchini, Paul Neve, Robyn Powell, Hannah Rees, David Swarbreck, Chris Watkins, Jonathan Wood, Seanna McTaggart, Anthony Hall, Dana MacGregor

引用次数: 0

A dataset for ¹⁵N natural abundance of soil ammonia volatilization.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04216-w

Lingyun Peng, Chaopu Ti, Bin Yin, Xiao Bai, Miao Li, Limin Tao, Xiaoyuan Yan

{"title":"A dataset for 15N natural abundance of soil ammonia volatilization.","authors":"Lingyun Peng, Chaopu Ti, Bin Yin, Xiao Bai, Miao Li, Limin Tao, Xiaoyuan Yan","doi":"10.1038/s41597-024-04216-w","DOIUrl":"https://doi.org/10.1038/s41597-024-04216-w","url":null,"abstract":"Investigating the sources of ammonia (NH3) in the atmosphere and the contribution of each source is essential for environmental pollution control. The presented dataset aims to provide 15N natural abundance (δ15N) data collected from different controlled treatments to fill the knowledge gap between insufficient data of soil δ15N-NH3 and accurately identifying atmospheric NH3 source apportionments. Our results showed that the overall δ15N-NH3 values emitted from soil ranged from -46.09 to 10.22‰, with an average of -26.81 ± 11.17‰. The mean δ15N-NH3 values under different nitrogen (N) application rates, N fertilizer types, air temperatures, soil moisture, soil pH, soil types, and land use types were -29.41 ± 10.91, -32.43 ± 6.86, -29.10 ± 10.04, -30.31 ± 6.18, -24.84 ± 13.76, -23.53 ± 7.66, and -14.57 ± 12.54‰, respectively. Significant correlations were observed between δ15N-NH3 values and soil pH, soil NO3--N concentration, and NH3 volatilization. This unique database provides basic data and evidence for the qualification of atmospheric NH3 source apportionments under different study area conditions.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1351"},"PeriodicalIF":5.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142855136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Microbial profiling of the East Siberian Sea sediments using 16S rRNA gene and metagenome sequencing.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04177-0

Jehyun Jeon, Yerin Park, Dong-Hun Lee, Ji-Hoon Kim, Young Keun Jin, Jong Kuk Hong, Yung Mi Lee

{"title":"Microbial profiling of the East Siberian Sea sediments using 16S rRNA gene and metagenome sequencing.","authors":"Jehyun Jeon, Yerin Park, Dong-Hun Lee, Ji-Hoon Kim, Young Keun Jin, Jong Kuk Hong, Yung Mi Lee","doi":"10.1038/s41597-024-04177-0","DOIUrl":"https://doi.org/10.1038/s41597-024-04177-0","url":null,"abstract":"The Arctic Ocean is experiencing significant global warming, leading to reduced sea-ice cover, submarine permafrost thawing, and increased river discharge. The East Siberian Sea (ESS) undergoes more significant terrestrial inflow from coastal erosion and river runoff than other Arctic seas. Despite extensive research on environmental changes, microbial communities and their functions in the ESS, which are closely related to environmental conditions, remain largely unexplored. Here, we investigated microbial communities in ESS surface sediments spanning latitudes from 73°N to 77°N using 16S rRNA amplicon sequencing, and reconstructed 211 metagenome-assembled genomes (MAGs) using shotgun metagenome sequencing. Taxonomic analysis identified 209 bacterial MAGs, with the predominant phyla Pseudomonadota (n = 82), Actinobacteriota (n = 38), Desulfobacterota (n = 23), along with 2 archaeal MAGs of Thermoproteota. Notably, 86% of the MAGs (n = 183) could not be classified into known species, indicating the potential presence of novel and unidentified microorganisms in the ESS. This dataset provides invaluable information on the microbial diversity and ecological functions in the rapidly changing ESS.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1350"},"PeriodicalIF":5.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142855313","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A chromosome-level genome assembly of tropical purple sea urchin Heliocidaris crassispina.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04255-3

Yang Liu, Ting Chen, Bo Ma, Jiayue Yin, Chunhua Ren, Xiao Jiang, Yanhong Wang, Wenjie Pan, Jiasheng Huang, Suzhong Yu, Peng Luo

引用次数: 0

NeuroVoz: a Castillian Spanish corpus of parkinsonian speech.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04186-z

Janaína Mendes-Laureano, Jorge A Gómez-García, Alejandro Guerrero-López, Elisa Luque-Buzo, Julián D Arias-Londoño, Francisco J Grandas-Pérez, Juan I Godino-Llorente

{"title":"NeuroVoz: a Castillian Spanish corpus of parkinsonian speech.","authors":"Janaína Mendes-Laureano, Jorge A Gómez-García, Alejandro Guerrero-López, Elisa Luque-Buzo, Julián D Arias-Londoño, Francisco J Grandas-Pérez, Juan I Godino-Llorente","doi":"10.1038/s41597-024-04186-z","DOIUrl":"https://doi.org/10.1038/s41597-024-04186-z","url":null,"abstract":"The screening of Parkinson's Disease (PD) through speech is hindered by a notable lack of publicly available datasets in different languages. This fact limits the reproducibility and further exploration of existing research. To address this gap, this manuscript presents the NeuroVoz corpus consisting of 112 native Castilian-Spanish speakers, including 58 healthy controls and 54 individuals with PD, all recorded in ON state. The corpus showcases a diverse array of speech tasks: sustained vowels; diadochokinetic tests; 16 Listen-and-Repeat utterances; and spontaneous monologues. The dataset is also complemented with subjective assessments of voice quality performed by an expert according to the GRBAS scale (Grade/Roughness/Breathiness/Asthenia/Strain), as well as annotations with a thorough examination of phonation quality, intensity, speed, resonance, intelligibility, and prosody. The corpus offers a substantial resource for the exploration of the impact of PD on speech. This data set has already supported several studies, achieving a benchmark accuracy of 89% for the screening of PD. Despite these advances, the broader challenge of conducting a language-agnostic, cross-corpora analysis of Parkinsonian speech patterns remains open.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1367"},"PeriodicalIF":5.8,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142855408","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Scope 2 estimates of carbon dioxide emissions from electricity consumption at the US census block group scale.

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-12-18 DOI: 10.1038/s41597-024-04180-5

Kevin R Gurney, Pawlok Dass, Anna Kato, Bhaskar Mitra, Modeste Kameni Nematchoua

引用次数: 0