Scientific Data最新文献_第3页

A 4 km daily gridded meteorological dataset for China from 2000 to 2020. 2000 年至 2020 年中国 4 公里日网格气象数据集。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-14 DOI: 10.1038/s41597-024-04029-x

Jielin Zhang, Bo Liu, Siqing Ren, Wenqi Han, Yongxia Ding, Shouzhang Peng

{"title":"A 4 km daily gridded meteorological dataset for China from 2000 to 2020.","authors":"Jielin Zhang, Bo Liu, Siqing Ren, Wenqi Han, Yongxia Ding, Shouzhang Peng","doi":"10.1038/s41597-024-04029-x","DOIUrl":"10.1038/s41597-024-04029-x","url":null,"abstract":"Multi-variate gridded meteorological data with high spatial resolution play a key role in studies related to climate change. This study constructed a 4 km daily gridded meteorological dataset for mainland of China (China Daily Meteorological Dataset; CDMet) from 2000 to 2020. The dataset includes nine meteorological variables: 2-meter air temperature (maximum, minimum, and mean temperatures), total precipitation, skin temperature, 10-meter wind speed, relative humidity, surface pressure, and sunshine duration. CDMet was generated using an adaptive interpolation scheme, which employed thin-plate spline and random forest methods to construct the interpolation model. Six combinations of location and terrain information were designed and used as covariates in the model together with reanalysis data. Validation with independent observation stations and existing datasets showed that CDMet has acceptable accuracy, reasonable seasonal variability, and precise spatial distribution, and its accuracy is comparable to that of other datasets. Due to its comprehensive variables and high resolution, CDMet can be used as input data for hydrological, agricultural, and ecological models.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1230"},"PeriodicalIF":5.8,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11564775/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142627203","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A transcriptome data set for comparing skin, muscle and dorsal root ganglion between acute and chronic postsurgical pain rats. 用于比较急性和慢性术后疼痛大鼠皮肤、肌肉和背根神经节的转录组数据集。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-14 DOI: 10.1038/s41597-024-04078-2

Xiao-Yan Meng, Lan Bu, Ling Shen, Kun-Ming Tao

引用次数: 0

Chromosome-level genome assembly of banaba (Lagerstroemia speciosa L.). 巴纳巴（Lagerstroemia speciosa L.）染色体级基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-14 DOI: 10.1038/s41597-024-04109-y

Zhiting Wan, Tangchun Zheng, Ming Cai, Jia Wang, Huitang Pan, Tangren Cheng, Qixiang Zhang

引用次数: 0

The chromosome-level genome assembly and annotation of an invasive forest pest Obolodiplosis robiniae. 入侵森林害虫 Obolodiplosis robiniae 的染色体级基因组组装和注释。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-14 DOI: 10.1038/s41597-024-04037-x

Lan Huang, Li Wang, Hui-Quan Sun, Wen-Xia Huai, Ruo-Zhu Lin, Shu-Jun Wei, Yan-Xia Yao

引用次数: 0

Genome assembly at chromosome scale with telomere ends for Pearlspot, Etroplus suratensis. 珠斑（Etroplus suratensis）带端粒末端的染色体尺度基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04096-0

Vinaya Kumar Katneni, Karthic Krishnan, Sudheesh K Prabhudas, Roja Jayaraman, Nida Quraishi, Kumaraguru Vasagam, Ashok Kumar Jangam, Jesudhas Raymond Jani Angel, Nimisha Kaikkolante, Kumaravel Jayaraman, S Shekhar Mudagandur

{"title":"Genome assembly at chromosome scale with telomere ends for Pearlspot, Etroplus suratensis.","authors":"Vinaya Kumar Katneni, Karthic Krishnan, Sudheesh K Prabhudas, Roja Jayaraman, Nida Quraishi, Kumaraguru Vasagam, Ashok Kumar Jangam, Jesudhas Raymond Jani Angel, Nimisha Kaikkolante, Kumaravel Jayaraman, S Shekhar Mudagandur","doi":"10.1038/s41597-024-04096-0","DOIUrl":"10.1038/s41597-024-04096-0","url":null,"abstract":"The pearlspot, Etroplus suratensis is a climate resilient cichlid fish that exhibits unusual adaptation to salinity. The fish is able to complete full life cycle in diverse salinity habitats ranging from fresh water to marine environments. High-quality primary and phased genome assemblies were generated for pearlspot fish using PacBio HiFi and Arima HiC sequencing technologies, for the first time. The primary assembly is highly contiguous with contig N50 length of 36 Mb. The final assembly is of 1.247 Gb with N50 length of 51.57 Mb and 98% of the genome length anchored to 24 chromosomes. The genome was assessed to be 99.9% complete based on BUSCO evaluation and was predicted to contain 52.96% repeat elements. We have predicted 27,192 protein encoding genes, of which 21,580 were functionally annotated. The genome offers an invaluable resource to understand adaptation of pearlspot fish to diverse salinity habitats.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1226"},"PeriodicalIF":5.8,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11560961/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142627269","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Chromosome-level genome assembly of the cave leech Sinospelaeobdella cavatuses (Hirudinea: Haemadipsidae). 洞穴水蛭（Sinospelaeobdella cavatuses）（蛭科：Haemadipsidae）染色体组水平的基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04007-3

Binbin Yao, Delong Guan, Lulu Yang, Tao Jiang, Lu Zhao, Muhammad Salabat Khan, Sheng-Quan Xu

引用次数: 0

Comprehensive experimental datasets of quasicrystals and their approximants. 准晶体及其近似值的综合实验数据集。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04043-z

Erina Fujita, Chang Liu, Asuka Ishikawa, Tomoya Mato, Koichi Kitahara, Ryuji Tamura, Kaoru Kimura, Ryo Yoshida, Yukari Katsura

引用次数: 0

Whole genome sequencing of CRISPR/Cas9-engineered NF-κB reporter mice for validation and variant discovery. 对 CRISPR/Cas9 改造的 NF-κB 报告小鼠进行全基因组测序，以进行验证和变异发现。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04064-8

Guruswamy Mahesh, Erik W Martin, Mohammad Aqdas, Kyu-Seon Oh, Myong-Hee Sung

{"title":"Whole genome sequencing of CRISPR/Cas9-engineered NF-κB reporter mice for validation and variant discovery.","authors":"Guruswamy Mahesh, Erik W Martin, Mohammad Aqdas, Kyu-Seon Oh, Myong-Hee Sung","doi":"10.1038/s41597-024-04064-8","DOIUrl":"10.1038/s41597-024-04064-8","url":null,"abstract":"Targeted knockout, mutations, or knock-in of genomic DNA fragments in model organisms have been used widely for functional and cell-tracking studies. The desired genetic perturbation is often accomplished by recombination-based or CRISPR/Cas9-based genome engineering. For validating the intended genetic modification, a local region surrounding the targeted locus is typically examined based on enzymatic cleavage and consequent length patterns, e.g. in a Southern analysis. Despite its wide use, this approach is open to incomplete and ambiguous readouts. With decreasing costs of high-throughput sequencing, it is becoming feasible to consider a large-scale validation of a new strain after a targeted genetic perturbation. Here we describe a dataset of whole-genome sequences and the variant analysis results from four novel reporter mouse strains. This served to validate the strains and identified all the off-target effects on the genome, thereby increasing the genetic diversity of genomic sequences over those represented in the public databases for inbred mice.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"11 1","pages":"1225"},"PeriodicalIF":5.8,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11561245/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142627346","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Chromosome-level genome assembly of Indo-Pacific king mackerel (Scomberomorus guttatus). 印度-太平洋马鲛鱼（Scomberomorus guttatus）染色体级基因组组装。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-13 DOI: 10.1038/s41597-024-04110-5

Yan Gao, Sailan Liu, Qilin Gutang, Chengzhang Li, Xiaoqi Lin, Bo Liang, Ping Li, Jianqing Lin, Wenhua Liu

引用次数: 0

High-resolution topography reveals morphological changes of Stromboli volcano following the July 2024 eruption. 高分辨率地形图显示了 2024 年 7 月爆发后斯特龙博利火山的形态变化。

IF 5.8 2区综合性期刊

Scientific Data Pub Date : 2024-11-12 DOI: 10.1038/s41597-024-04098-y

Riccardo Civico, Tullio Ricci, Alessandro Cecili, Piergiorgio Scarlato

引用次数: 0