Scientific Data最新文献

New Release of User-Captured Images from the Oregon Health & Science University Melanoma MoleMapper Project. 来自俄勒冈健康与科学大学黑色素瘤MoleMapper项目的用户捕获图像的最新发布。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-02 DOI: 10.1038/s41597-025-05552-1

Tracy Petrie, Ravikant Samatham, Dan E Webster, Sancy A Leachman

{"title":"New Release of User-Captured Images from the Oregon Health & Science University Melanoma MoleMapper Project.","authors":"Tracy Petrie, Ravikant Samatham, Dan E Webster, Sancy A Leachman","doi":"10.1038/s41597-025-05552-1","DOIUrl":"https://doi.org/10.1038/s41597-025-05552-1","url":null,"abstract":"We announce the release of the OHSU MoleMapper Smartphone Skin Images dataset which contains over six years of new data acquired from the Oregon Health & Science University's (OHSU) MoleMapper study. This released dataset includes 27,499 mole images curated to exclude images with protected health identifiers, 7,305 images of skin patches near the mole images, 1,000 contextual images, and basic metadata from the participants. This data is available to qualified researchers on Sage Bionetwork's Synapse platform under Synapse ID syn51520810 and represents the largest publicly available dataset of consumer-collected smartphone images of pigmented skin lesions. We release these data to the biomedical research community to enable quantitative analysis of images of non-clinician smartphone photography of skin lesions as well as to better understand what lesions appear concerning to the public. These data are unlabelled but in a machine learning context can be used to pre-train networks using self-supervised learning techniques or to quantitatively analyze the image quality of consumer-collected skin images.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1346"},"PeriodicalIF":6.9,"publicationDate":"2025-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144769005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Open access dataset integrating behavioral and EEG measures in Chinese spoken word production. 中文口语词生成的行为和脑电测量的开放获取数据集。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-02 DOI: 10.1038/s41597-025-05671-9

Chenghui Tan, Qingfang Zhang

{"title":"Open access dataset integrating behavioral and EEG measures in Chinese spoken word production.","authors":"Chenghui Tan, Qingfang Zhang","doi":"10.1038/s41597-025-05671-9","DOIUrl":"https://doi.org/10.1038/s41597-025-05671-9","url":null,"abstract":"Speech production involves the transformation of abstract phonemes into concrete phonetic units through phonological encoding, a process where syllables play a particularly crucial role in Mandarin Chinese as a tonal language. Studies suggest that syllables serve as the primary units for phonological encoding, as evidenced by the syllable effect, where shared syllables between words lead to faster and more efficient processing in native Mandarin speakers. However, there is a lack of publicly available datasets that simultaneously capture behavioral and electroencephalogram (EEG) to study this process. This dataset, collected from 87 native Mandarin speakers across four experiments on Chinese spoken word production, integrates behavioral and EEG data, providing insights into the temporal dynamics of syllable and phonemes processing in speech production. Analysis on the accuracy and response latencies derived from behavioral recordings, along with event-related potential analysis of EEG data, reveals the existence of syllable effect. These findings advance our understanding of phonological encoding in tonal languages and enable cross-linguistic comparisons.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1348"},"PeriodicalIF":6.9,"publicationDate":"2025-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144769006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

The cardiac phospho-proteome during pressure overload in mice. 小鼠压力过载时心脏磷酸化蛋白质组的变化。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-02 DOI: 10.1038/s41597-025-05506-7

Rhys Wardman, Steve Grein, Jennifer Schwartz, Frank Stein, Joerg Heineke

{"title":"The cardiac phospho-proteome during pressure overload in mice.","authors":"Rhys Wardman, Steve Grein, Jennifer Schwartz, Frank Stein, Joerg Heineke","doi":"10.1038/s41597-025-05506-7","DOIUrl":"https://doi.org/10.1038/s41597-025-05506-7","url":null,"abstract":"Transaortic constriction (TAC) is a murine model of pressure overload-induced cardiac hypertrophy and heart failure. Despite its high prevalence during aortic stenosis or chronic arterial hypertension, the global alterations in cardiac phospho-proteome dynamics following TAC remain incompletely characterised. We present a database of the phospho-proteomic signature one day and seven days after TAC. Utilising proteomic and phospho-proteomic analyses, we quantified thousands of proteins and phosphorylation sites, revealing hundreds of differential phosphorylation events significantly altered in the cardiac response to pressure overload. Our analysis highlights significant changes in hypertrophic signalling, metabolic remodelling, contractile function, and the stress response pathways. We present proteomic data from the main cardiac cell types (endothelial cells, fibroblasts and cardiomyocytes) to reveal the cellular localisation of the detected phospho-proteins, offering insights into temporal and site-specific phosphorylation events, facilitating the potential discovery of novel therapeutic targets and biomarkers. By making this resource publicly available (ProteomeXchange with identifier PXD061784) we aim to enable further exploration of the molecular basis of cardiac remodelling and advance translational research in heart failure.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1347"},"PeriodicalIF":6.9,"publicationDate":"2025-08-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144769007","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Chromosome-level genome assembly of hawthorn spider mite, Amphitetranychus viennensis (Acari: Tetranychidae). 山楂叶螨染色体水平的基因组组装（蜱螨亚纲：叶螨科）。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-01 DOI: 10.1038/s41597-025-05683-5

Meifeng Ren, Yuying Zhang, Yifei Wang, Yuanpeng Duan, Yue Gao, Zhongfang Liu, Pengjiu Zhang, Lifei He, Renjun Fan, Xuguo Zhou, Jing Yang

{"title":"Chromosome-level genome assembly of hawthorn spider mite, Amphitetranychus viennensis (Acari: Tetranychidae).","authors":"Meifeng Ren, Yuying Zhang, Yifei Wang, Yuanpeng Duan, Yue Gao, Zhongfang Liu, Pengjiu Zhang, Lifei He, Renjun Fan, Xuguo Zhou, Jing Yang","doi":"10.1038/s41597-025-05683-5","DOIUrl":"https://doi.org/10.1038/s41597-025-05683-5","url":null,"abstract":"The hawthorn spider mite, Amphitetranychus viennensis, is a major pest of orchards and ornamentals in the Palaearctic region, with adaptability and acaricide resistance. The lack of high-quality genomic resources limits understanding of its detoxification mechanisms and the development of RNAi-based pest control strategies. In this study, we utilized Illumina, Pacific Biosciences (PacBio), and Hi-C sequencing technologies to assemble a chromosome-level reference genome of A. viennensis. The assembled genome spans 141.96 Mb, with a contig N50 of 1.35 Mb. BUSCO analysis confirmed a high level of completeness, covering 91.6% of annotated genes. The assembly includes 50.97 Mb of repetitive sequences, representing 35.93% of the genome, and annotates 13,968 protein-coding genes. Using Hi-C sequencing, we anchored 47 contigs to three chromosomes, accounting for 97.27% of the estimated nuclear genome and achieving a contig N50 of 45.83 Mb. This high-quality genome assembly provides a valuable foundation for evolutionary and genomic research on spider mites, while also serving as a genetic resource to inform molecular control strategies and support sustainable pest management.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1342"},"PeriodicalIF":6.9,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144765368","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Gridded mobile source emissions with multiple processes and pollutants from 2011 to 2020 in China. 2011 - 2020年中国多过程多污染物移动源排放网格化。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-01 DOI: 10.1038/s41597-025-05690-6

Junchao Zhao, Zhaofeng Lv, Zhenyu Luo, Zhining Zhang, Haitong Zhe Sun, Wenxin Cao, Wen Yi, Yongyue Wang, Hezhong Tian, Yan Ding, Kebin He, Huan Liu

{"title":"Gridded mobile source emissions with multiple processes and pollutants from 2011 to 2020 in China.","authors":"Junchao Zhao, Zhaofeng Lv, Zhenyu Luo, Zhining Zhang, Haitong Zhe Sun, Wenxin Cao, Wen Yi, Yongyue Wang, Hezhong Tian, Yan Ding, Kebin He, Huan Liu","doi":"10.1038/s41597-025-05690-6","DOIUrl":"https://doi.org/10.1038/s41597-025-05690-6","url":null,"abstract":"Accurate and comprehensive estimation of mobile source (MS) emissions is essential for air quality management and atmospheric research. However, existing emission inventories often lack sufficient coverage of MS categories, emerging pollutants, and newly developed model parameterizations. Here, we present the Gridded Mobile-source Emission Dataset (GMED), a model-ready emission inventory with detailed source classification and multi-pollutant coverage. GMED provides monthly emissions from 2011 to 2020 at a spatial resolution of 36 km × 36 km, covering eight MS categories and including both tailpipe and non-exhaust emissions. It incorporates several methodological improvements and integrates localized measurements from multiple sources, including emission factors, organic compound speciation, spatiotemporal proxies, and activity data. Validation involves comparisons with established inventories and cross-checks of key model parameters, both showing good agreement across multiple metrics. GMED outputs also align well with high-resolution emission inventories derived from big traffic data. As a validated, long-term dataset, GMED supports emission assessments, air quality modelling, and policy evaluation, helping to fill a critical gap in differentiated, multi-year MS emission inventories.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1344"},"PeriodicalIF":6.9,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144765371","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Tsunami Runup Survey Data From The Taan Fjord Landslide Event. 来自Taan峡湾滑坡事件的海啸前兆调查数据。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-01 DOI: 10.1038/s41597-025-05617-1

Patrick J Lynett, Robert Weiss, Bretwood M Higman, Andrew F Mattox, Adam S Keen, Vassilios Skanavis, Hui Tang, Aykut Ayca, Nikos Kalligeris

{"title":"Tsunami Runup Survey Data From The Taan Fjord Landslide Event.","authors":"Patrick J Lynett, Robert Weiss, Bretwood M Higman, Andrew F Mattox, Adam S Keen, Vassilios Skanavis, Hui Tang, Aykut Ayca, Nikos Kalligeris","doi":"10.1038/s41597-025-05617-1","DOIUrl":"https://doi.org/10.1038/s41597-025-05617-1","url":null,"abstract":"On 17 October 2015, a mountainside collapse at the terminus of Tyndall Glacier in southeast Alaska generated a landslide-triggered mega-tsunami. The landslide sent approximately 7.6 × 107 m3 of rock and glacial sediment into Taan Fjord, abruptly displacing the water. The ensuing tsunami reached a peak runup of ~193 m on a steep slope directly across from the landslide, ranking among the highest tsunami runups ever documented. The wave inundated over 20 km² of terrain around Taan Fjord and Icy Bay, stripping forests and depositing sediment up to hundreds of meters inland. In 2016, a comprehensive field campaign surveyed the event, recording precise tsunami runup elevations, flow depths, and inundation distances at dozens of sites throughout the fjord and adjacent coastlines. Here we present the resulting datasets: a georeferenced catalogue of tsunami runup measurements, high-resolution topography and bathymetry data, and an extensive collection of field photographs. These data provide a quantitative record of a mega-tsunami's onshore effects, intended as a benchmark dataset for landslide-tsunami modeling and hazard assessment.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1341"},"PeriodicalIF":6.9,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144765373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

GeoMIP-Pattern - a pattern scaling dataset for efficient generation of custom geoengineering scenarios. GeoMIP-Pattern -一个模式缩放数据集，用于有效地生成自定义地球工程场景。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-01 DOI: 10.1038/s41597-025-05496-6

Rodrigo Muñoz-Sánchez, Bernardo A Bastien-Olvera, Oscar Calderón, Francisco Estrada Porrúa, Miguel Altamirano

{"title":"GeoMIP-Pattern - a pattern scaling dataset for efficient generation of custom geoengineering scenarios.","authors":"Rodrigo Muñoz-Sánchez, Bernardo A Bastien-Olvera, Oscar Calderón, Francisco Estrada Porrúa, Miguel Altamirano","doi":"10.1038/s41597-025-05496-6","DOIUrl":"https://doi.org/10.1038/s41597-025-05496-6","url":null,"abstract":"In this paper we present GeoMIP-pattern, the first global geoengineering pattern scaling dataset. This dataset is useful to generate custom solar radiation modification scenarios and to emulate the GeoMIP model output with low data volume. Temperature, precipitation, and relative humidity patterns are derived from ScenarioMIP SSP5-8.5 and GeoMIP G6sulfur model output data using a two-step approach: the first scaling patterns are obtained by estimating a linear regression between the field of interest and the SSP5-8.5 annual global mean surface temperature, allowing for the calculation of no stratospheric aerosol injection scenarios for a global spatial grid. The second patterns are produced by regressing the field of interest on the annual global temperature difference between the G6sulfur and SSP5-8.5 experiments, which in combination with the first pattern emulates the stratospheric aerosol injection scenario. The dataset contains validation statistics, including unit root hypothesis tests novel to the field of pattern scaling, which demonstrate that the pattern slope adequately captures local changes, with most regions showing no remaining trend or nonstationarities in the residuals.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1343"},"PeriodicalIF":6.9,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144765370","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Multimodal data curation via interoperability: use cases with the Medical Imaging and Data Resource Center. 通过互操作性进行多模式数据管理：与医学成像和数据资源中心的用例。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-01 DOI: 10.1038/s41597-025-05678-2

Weijie Chen, Heather M Whitney, Seyed Kahaki, Christopher Meyer, Hui Li, Rui Carlos Sá, Diane Lauderdale, Sandy Napel, Kenneth Gersing, Robert L Grossman, Maryellen L Giger

{"title":"Multimodal data curation via interoperability: use cases with the Medical Imaging and Data Resource Center.","authors":"Weijie Chen, Heather M Whitney, Seyed Kahaki, Christopher Meyer, Hui Li, Rui Carlos Sá, Diane Lauderdale, Sandy Napel, Kenneth Gersing, Robert L Grossman, Maryellen L Giger","doi":"10.1038/s41597-025-05678-2","DOIUrl":"https://doi.org/10.1038/s41597-025-05678-2","url":null,"abstract":"Interoperability (the ability of data or tools from non-cooperating resources to integrate or work together with minimal effort) is particularly important for curation of multimodal datasets from multiple data sources. The Medical Imaging and Data Resource Center (MIDRC), a multi-institutional collaborative initiative to collect, curate, and share medical imaging datasets, has made interoperability with other data commons one of its top priorities. The purpose of this study was to demonstrate the interoperability between MIDRC and two other data repositories, BioData Catalyst (BDC) and National Clinical Cohort Collaborative (N3C). Using interoperability capabilities of the data repositories, we built two cohorts for example use cases, with each containing clinical and imaging data on matched patients. The representativeness of the cohorts is characterized by comparing with CDC population statistics using the Jensen-Shannon distance. The process and methods of interoperability demonstrated in this work can be utilized by MIDRC, BDC, and N3C users to create multimodal datasets for development of artificial intelligence/machine learning models.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1340"},"PeriodicalIF":6.9,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144765372","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Chromosome-level genome of the shining chafers Kibakoganea tamdaoensis (Coleoptera: Scarabaeidae: Rutelinae). tamdaoensis Kibakoganea的染色体水平基因组（鞘翅目：金龟甲科：金龟甲科）。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-08-01 DOI: 10.1038/s41597-025-05657-7

Rongrong Shen, Terrence Sylvester, Qiang Ding, Xinwen Yang, Yijie Tong, Ning Liu, Can Wang, Yansong Xiao, Chunyang Huang, Shaolong Wu, Ming Bai

{"title":"Chromosome-level genome of the shining chafers Kibakoganea tamdaoensis (Coleoptera: Scarabaeidae: Rutelinae).","authors":"Rongrong Shen, Terrence Sylvester, Qiang Ding, Xinwen Yang, Yijie Tong, Ning Liu, Can Wang, Yansong Xiao, Chunyang Huang, Shaolong Wu, Ming Bai","doi":"10.1038/s41597-025-05657-7","DOIUrl":"https://doi.org/10.1038/s41597-025-05657-7","url":null,"abstract":"The beetle subfamily Rutelinae (shining leaf chafers) in the family Scarabaeidae is famous for its colorful body and phytophagous habitat. Among these shining leaf chafers, Kibakoganea tamdaoensis Miyake et Muramoto, 1992 is one with ornamental value because of their enlarged and horn-like mandibles. Here we generated high-quality genome assembly of KTAMD, integrating PacBio HiFi and Hi-C, and annotated with RNA sequence data. The resulting assembly is 605.37 Mb, of which 96.09% is anchored into 10 chromosomes. The scaffold N50 is 54.00 Mb, and BUSCO completeness is 96.6%. Repetitive elements span 49.43% of the genome. Our annotation pipeline identified 984 noncoding RNAs and predicted 12,945 protein-coding genes in the genome (96.40% BUSCO completeness). As the chromosome-scale genome from the subfamily Rutelinae, the KTAMD genome provides important new insights into scarabae genome evolution and provides a new vantage point from which to study the evolution of specialized beetles.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1345"},"PeriodicalIF":6.9,"publicationDate":"2025-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144765369","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A chromosome-level genome assembly of Guimi No. 2 (Actinidia chinensis). 桂米2号的染色体水平基因组组装。

IF 6.9 2区综合性期刊

Scientific Data Pub Date : 2025-07-31 DOI: 10.1038/s41597-025-05593-6

Jia Zhou, Feifei Wang, Weiming Zhong, Qianming Zheng, Yong Qi, Binbin Shi, Qing Liu, Sheng Zhang, Nan Wang, Dongmei Tang

{"title":"A chromosome-level genome assembly of Guimi No. 2 (Actinidia chinensis).","authors":"Jia Zhou, Feifei Wang, Weiming Zhong, Qianming Zheng, Yong Qi, Binbin Shi, Qing Liu, Sheng Zhang, Nan Wang, Dongmei Tang","doi":"10.1038/s41597-025-05593-6","DOIUrl":"10.1038/s41597-025-05593-6","url":null,"abstract":"In this study, we report a high-quality chromosome-level genome assembly of Actinidia chinensis var. chinensis 'Guimi No. 2'. This cultivar, discovered in Guizhou karst ecosystems, exhibits resistance to Pseudomonas syringae pv. actinidiae (Psa). Using a combination of MGI short-read sequencing, PacBio HiFi long-read sequencing, and Hi-C technology, we generated a genome assembly of 608.43 Mb with a contig N50 of 20.70 Mb, and 99.70% of the assembly was successfully anchored onto 29 pseudochromosomes. The quality value (QV) and the LTR Assembly Index (LAI) of the assembled genome were 72.23 and 10.10. The BUSCO analysis indicated that the genome assembly and gene model prediction were 98.40% and 96.56% complete, respectively. A total of 251.15 Mb of repetitive sequences and 45,986 protein-coding genes were annotated. This genome assembly provides critical insights into A. chinensis's genomic architecture and serves as a foundational resource for elucidating disease resistance mechanisms against Psa, while enabling comparative phylogenomic studies across the Actinidia genus.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"12 1","pages":"1334"},"PeriodicalIF":6.9,"publicationDate":"2025-07-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12313964/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144761189","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0