Scientific Data最新文献

A ubiquitinome and proteome dataset of the red alga Gracilariopsis lemaneiformis under cold stress.

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-19 DOI: 10.1038/s41597-026-07789-w

Feng Qin, Xiuyu Zhang, Shuangshuang Peng, Jianxin Sun, Di Xu, Weizhou Chen, Xiaonan Zang

{"title":"A ubiquitinome and proteome dataset of the red alga Gracilariopsis lemaneiformis under cold stress.","authors":"Feng Qin, Xiuyu Zhang, Shuangshuang Peng, Jianxin Sun, Di Xu, Weizhou Chen, Xiaonan Zang","doi":"10.1038/s41597-026-07789-w","DOIUrl":"https://doi.org/10.1038/s41597-026-07789-w","url":null,"abstract":"Low temperature is a major environmental factor constraining the growth and aquaculture performance of the red alga Gracilariopsis lemaneiformis, yet systematic protein-level data describing cold stress responses remain limited. Ubiquitination is a key post-translational modification involved in regulating protein stability and turnover during stress adaptation. Here, we present a paired dataset of the global proteome and the ubiquitin-modified proteome of G. lemaneiformis under cold stress, generated using a matched experimental design across identical conditions. This paired dataset provides a valuable resource for future investigations of the relationship between protein abundance changes and ubiquitination regulation during cold-stress responses. We further provide detailed technical validation demonstrating high data quality and strong reproducibility among biological replicates. These datasets constitute a valuable resource for investigating ubiquitination-associated protein homeostasis during cold adaptation, facilitating the identification of ubiquitination-regulated substrate candidates under cold stress, and supporting downstream functional studies as well as the breeding of cold-tolerant G. lemaneiformis strains.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149224843","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Multi-Omics Dataset of Heat Stress-Induced Memory in Arabidopsis.

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-19 DOI: 10.1038/s41597-026-07813-z

Venkatesh P Thirumalaikumar, Liang Yu, Devender Arora, Umrah Mubeen, Andrew Wiszniewski, Dirk Walther, Patrick Giavalisco, Saleh Alseekh, Andrew D L Nelson, Aleksandra Skirycz, Salma Balazadeh

{"title":"Multi-Omics Dataset of Heat Stress-Induced Memory in Arabidopsis.","authors":"Venkatesh P Thirumalaikumar, Liang Yu, Devender Arora, Umrah Mubeen, Andrew Wiszniewski, Dirk Walther, Patrick Giavalisco, Saleh Alseekh, Andrew D L Nelson, Aleksandra Skirycz, Salma Balazadeh","doi":"10.1038/s41597-026-07813-z","DOIUrl":"https://doi.org/10.1038/s41597-026-07813-z","url":null,"abstract":"In their natural environment, plants experience temperature fluctuations, including intensified heat waves driven by climate change, which pose significant threats to their productivity. To adapt, plants have evolved diverse mechanisms to withstand heat stress (HS), minimizing potential damage and ensuring survival. One such adaptation is acquired thermotolerance (AT), in which prior exposure to HS primes plants to withstand subsequent severe HS. AT can persist for several days and involves a recovery period during which plants establish heat stress memory (HSM), reorganize cellular processes, and strengthen stress resilience. The molecular mechanisms underlying HSM remain an active area of investigation. This dataset provides high-throughput comparative multi-omics data, including the transcriptome, metabolome, and proteome of Arabidopsis thaliana seedlings at distinct intervals during the HSM phase. As the first detailed multi-omics dataset of the HSM phase in Arabidopsis seedlings, it serves as a valuable resource for future research aimed at identifying regulators of heat stress resilience and advancing the development of heat-tolerant crops.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149224762","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Arabidopsis nanopore direct RNA sequencing data for mutants in splicing, polyadenylation, and m6A methylation.

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-19 DOI: 10.1038/s41597-026-07757-4

Natalia Gumińska, Łukasz Szewc, Agnieszka Czarnocka-Cieciura, Wiktoria Orzeł, Sebastian Jeleń, Mateusz Bajczyk, Seweryn Mroczek, Andrzej Dziembowski, Artur Jarmołowski

{"title":"Arabidopsis nanopore direct RNA sequencing data for mutants in splicing, polyadenylation, and m6A methylation.","authors":"Natalia Gumińska, Łukasz Szewc, Agnieszka Czarnocka-Cieciura, Wiktoria Orzeł, Sebastian Jeleń, Mateusz Bajczyk, Seweryn Mroczek, Andrzej Dziembowski, Artur Jarmołowski","doi":"10.1038/s41597-026-07757-4","DOIUrl":"https://doi.org/10.1038/s41597-026-07757-4","url":null,"abstract":"Co-transcriptional RNA processing, including alternative splicing and polyadenylation, generates diverse mRNA isoforms essential for development, differentiation, and stress responses. We present Oxford Nanopore Direct RNA Sequencing (DRS) data from Arabidopsis thaliana wild-type (Col-0) plants and mutants defective in RNA processing pathways, including polyadenylation, RNA methylation, and pre-mRNA splicing. We obtained full-length reads together with native poly(A) tail information. The provided resources include FAST5 and FASTQ files, poly(A) tail length estimates from Nanopolish, poly(A) composition data from Ninetails, and differential expression analyses generated with DESeq2, all aligned to the TAIR10 reference transcriptome. These data offer a comprehensive view of RNA processing at the single-molecule level and can be reused to explore alternative polyadenylation, RNA modification patterns, or indirectly, splicing alterations across various genetic backgrounds. This resource is intended to support studies of gene expression regulation and RNA metabolism in Arabidopsis thaliana and related plant systems.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-10-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149224758","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A dataset on radical and extremist attitudes in Europe. 关于欧洲激进和极端主义态度的数据集。

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-17 DOI: 10.1038/s41597-026-08455-x

Sebastian Jungkunz, Nina Fadarkhan Osenbrügge, Marc Helbling

引用次数: 0

Mitochondrial apoptosis imaged by high-throughput confocal microscopy. 高通量共聚焦显微镜成像的线粒体凋亡。

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-15 DOI: 10.1038/s41597-026-08502-7

Lina Hellwig, Felix J Meigel, Harald Stachelscheid, Steffen Rulands, Philipp Mergenthaler

{"title":"Mitochondrial apoptosis imaged by high-throughput confocal microscopy.","authors":"Lina Hellwig, Felix J Meigel, Harald Stachelscheid, Steffen Rulands, Philipp Mergenthaler","doi":"10.1038/s41597-026-08502-7","DOIUrl":"10.1038/s41597-026-08502-7","url":null,"abstract":"Mitochondrial programmed cell death (i.e. intrinsic apoptosis) is regulated through the formation of pro-apoptotic protein complexes at the mitochondrial outer membrane (MOM), which permeabilize the MOM and commit the cell to die. This step is modulated by mitochondrial dynamics. To capture this, we treated cells with the mitochondrial dynamics inhibitor M1 before inducing apoptosis with actinomycin D (ActD), and imaged them by high-throughput spinning-disk confocal microscopy. In mouse embryonic fibroblasts (MEFs) we followed apoptosis by long-term live-cell imaging, and in human induced pluripotent stem cells (hiPSCs) we stained fixed cells for the pro-apoptotc protein BAX at mitochondria. Here, we provide a description of these two large-scale microscopy datasets. Dataset 1 contains 637,632 images of MEFs imaged as time series after labelling of mitochondrial morphology and integrity with the mitochondrial membrane potential-sensitive dye tetramethylrhodamine-ethylester (TMRE) and apoptosis with Annexin V-FITC. The dataset also contains a digital phase contrast channel which can be useful to track cells. Dataset 2 contains 9,504 images of hiPSCs with immunofluorescence labelling of BAX and COX IV. The datasets are made available through the BioImage Archive repository.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-10-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149196150","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

LOCC-GER - A georeferenced local climate policy database for Germany. LOCC-GER -德国地理参考的地方气候政策数据库。

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-07 DOI: 10.1038/s41597-026-08183-2

Dennis Abel, Manuel Linsenmeier, Stefan Jünger, Amelie Veit

引用次数: 0

Annual Migration Flow Estimates by Sex between all Countries since 1960. 自1960年以来各国按性别分列的年度移民流量估计。

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-06 DOI: 10.1038/s41597-026-07983-w

Robert M Beyer, Jacob Schewe, Guy J Abel, Koko Warner, Stuart R Campo

{"title":"Annual Migration Flow Estimates by Sex between all Countries since 1960.","authors":"Robert M Beyer, Jacob Schewe, Guy J Abel, Koko Warner, Stuart R Campo","doi":"10.1038/s41597-026-07983-w","DOIUrl":"10.1038/s41597-026-07983-w","url":null,"abstract":"Global migration data are essential for understanding how human mobility shapes demographic, economic, social, and political dynamics worldwide. While migrant stock estimates remain a key resource, many research and policy applications benefit from data on migration flows, given their greater sensitivity to economic, political, and other changes. Inferring flows from stocks is not trivial, especially at a temporal resolution finer than the multi-year intervals of the stock data, which can be too coarse to capture migration responses to short-term events. Here, we present FLOW, a global dataset of bilateral migration flows, consistent with available migrant stock data, covering 1960-2024 at annual resolution. We first estimate multi-year flows by linking stock-derived variables to recent global flow observations, and applying the model to harmonised historical data. We then downscale the results to annual resolution by aligning them with country-level annual net migration. While subject to limitations and uncertainties inherent to this spatial and temporal scale, FLOW estimates provide a consistent and comprehensive resource for historical and forward-looking migration research, model development, and policy analysis, combining global coverage with annual resolution across more than six decades.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-10-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13642930/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149114689","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Carneiro's global dataset of cultural traits in ethnographic and historical societies: a digital edition. 卡内罗关于人种学和历史社会文化特征的全球数据集：数字版。

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-02 DOI: 10.1038/s41597-026-08212-0

Václav Hrnčíř, Robert Forkel, Russell D Gray

{"title":"Carneiro's global dataset of cultural traits in ethnographic and historical societies: a digital edition.","authors":"Václav Hrnčíř, Robert Forkel, Russell D Gray","doi":"10.1038/s41597-026-08212-0","DOIUrl":"10.1038/s41597-026-08212-0","url":null,"abstract":"The late Robert L. Carneiro was a prominent anthropologist who devoted his life to the study of political evolution and the evolution of complex societies. In the 1960s and 1970s, he and his colleagues created a cross-cultural dataset for their Scale Analysis project, collecting ethnographic and historical data on hundreds of cultural traits in more than a hundred societies worldwide. Although Carneiro presented the results of the project in several papers, the dataset itself has not yet been published. Here we present a digital version of two editions of the dataset, based on Carneiro's documentation stored in the archives of the American Museum of Natural History. The 4th edition contains 127 societies and 354 cultural traits, and the 6th edition features 74 societies and 618 traits. Both represent unique sets of coded cross-cultural information that can be used as a comparative source to other cross-cultural datasets, as a starting point for one's own collection of cross-cultural data, and for quantitative testing of cultural evolutionary hypotheses.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13633262/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149114645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Time series data with and without anomalies from a continuous distillation plant. 连续蒸馏装置的时间序列数据，有无异常。

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-10-01 DOI: 10.1038/s41597-026-08308-7

Aparna Muraleedharan, Alvaro Ferre, Justus Arweiler, Indra Jungjohann, Fabian Jirasek, Hans Hasse, Jakob Burger

{"title":"Time series data with and without anomalies from a continuous distillation plant.","authors":"Aparna Muraleedharan, Alvaro Ferre, Justus Arweiler, Indra Jungjohann, Fabian Jirasek, Hans Hasse, Jakob Burger","doi":"10.1038/s41597-026-08308-7","DOIUrl":"https://doi.org/10.1038/s41597-026-08308-7","url":null,"abstract":"Reliable detection of process anomalies remains a challenge in industrial chemical plants. The ability of machine learning (ML) to recognize patterns has triggered numerous research efforts to apply ML to anomaly detection (AD). Simulation-based benchmarks, such as the Tennessee Eastman process, are widely used to develop and train AD methods. Well-annotated real-world process data, which are crucial for meaningful research advancements, are lacking due to industry-wide proprietary limitations. To overcome this issue, we present an openly accessible dataset of time series generated from an industry-like continuous distillation mini-plant under constant operating conditions. The data generated have different complexities: water runs, a heteroazeotropic separation of n-butanol-water, and a reactive process to produce a fuel additive. Chemical systems, plant setup, and anomalies (whether encountered or manually induced) are described alongside the process data. The complete dataset, including sensor and actuator data, annotations marking anomalies, and other metadata, is available in open access via an online Zenodo repository. It serves as training and testing data for ML-based AD and other data-driven applications.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13631339/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149114648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

A single-cell RNA-seq dataset characterizing cellular diversity in healthy equine skin. 单细胞RNA-seq数据集表征健康马皮肤细胞多样性。

IF 7.2 2区综合性期刊

Scientific Data Pub Date : 2026-09-30 DOI: 10.1038/s41597-026-08404-8

Srinivas Akula, Birong Zhang, Miia Riihimäki, Sara Wernersson, Amanda Raine

{"title":"A single-cell RNA-seq dataset characterizing cellular diversity in healthy equine skin.","authors":"Srinivas Akula, Birong Zhang, Miia Riihimäki, Sara Wernersson, Amanda Raine","doi":"10.1038/s41597-026-08404-8","DOIUrl":"https://doi.org/10.1038/s41597-026-08404-8","url":null,"abstract":"The skin serves as the primary barrier tissue in horses and is frequently affected by immune-mediated dermatological conditions, most notably insect bite hypersensitivity (IBH). Yet, the cellular composition and transcriptional landscape of normal equine skin have never been characterized at single-cell resolution. Here, we present a single-cell RNA sequencing dataset of healthy equine skin comprising 85,574 high-quality transcriptomes from two horses, with one skin biopsy collected from each horse, divided into two portions for independent processing via manual or automated tissue dissociation. The dataset resolved 22 transcriptionally distinct cell populations, encompassing keratinocyte subpopulations that reflect discrete epidermal differentiation states, adnexal epithelial lineages, stromal and vascular compartments, and resident immune cell types. Cell-type identities are supported by marker gene expression, KEGG pathway enrichment analysis, and functional module scoring. This dataset constitutes the first single-cell transcriptomic reference of normal equine skin, enabling investigations into equine dermatological diseases, wound healing, immune responses and comparative skin biology.","PeriodicalId":21597,"journal":{"name":"Scientific Data","volume":"13 1","pages":""},"PeriodicalIF":7.2,"publicationDate":"2026-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC13627664/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149114613","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"综合性期刊","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0