Saudi Journal of Biological Sciences最新文献

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Profitability and meat quality of fast-, medium- and slow-growing meat-type chicken genotypes as affected by growth and length of rearing 快速、中速和慢速生长肉用型鸡基因型的盈利能力和肉质受生长和饲养时间的影响
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-05-24 DOI: 10.1016/j.sjbs.2024.104025
Afifa Afrin , Tanvir Ahmed , Ankon Lahiry , Shahina Rahman , Bapon Dey , Md. Abul Hashem , Shubash Chandra Das
{"title":"Profitability and meat quality of fast-, medium- and slow-growing meat-type chicken genotypes as affected by growth and length of rearing","authors":"Afifa Afrin ,&nbsp;Tanvir Ahmed ,&nbsp;Ankon Lahiry ,&nbsp;Shahina Rahman ,&nbsp;Bapon Dey ,&nbsp;Md. Abul Hashem ,&nbsp;Shubash Chandra Das","doi":"10.1016/j.sjbs.2024.104025","DOIUrl":"10.1016/j.sjbs.2024.104025","url":null,"abstract":"<div><p>The study aimed to evaluate the profitability, meat quality, and carcass parameters of fast-, medium-, and slow-growing meat-type chicken genotypes of Bangladesh. Nine hundred DOCs were randomly allocated to 6 treatments: T<sub>1</sub> = commercial broilers, T<sub>2</sub> = CPF-3 (central poultry farm-3), T<sub>3</sub> = cockerel, T<sub>4</sub> = <em>sonali</em>, T<sub>5</sub> = NDD (non-descriptive <em>desi</em>), and T<sub>6</sub> = <em>hilly</em>, having 5 replications of 30 chicks each. Birds were reared under complete confinement until their respective market ages (commercial broilers = 35 d; CPF-3 = 45 d; cockerel = 56 d, and <em>hilly</em> = 77 d; <em>sonali</em> = 63 d and NDD = 77 d) and fed commercial broiler diets. Net returns, meat quality, growth, and carcass yield were measured. NDD and <em>hilly</em> showed significantly the highest profitability and superior meat quality. Commercial broilers exhibited the highest final body weight (2355.59 g/b) followed by <em>hilly</em> (1241 g/b) and NDD (1006 g/b), while CPF-3 (860.21 g/b), cockerel (915.49 g/b), and <em>sonali</em> (788.43 g/b) had lower final body weights at their respective market ages. Commercial broilers had the highest carcass weight and dressing yields, followed by <em>hilly</em> and cockerel, and lower in <em>sonali</em>, CPF-3, and NDD. The study concluded that rearing slow- or medium-growing NDD and <em>hilly</em> is superior to fast-growing commercial broilers or CPF-3 regarding profitability, and meat quality. The results of current findings help small-scale farmers in choosing a suitable meat-type chicken that yields better profitability and also for the consumers who wish to pay a fair price for the birds, considering the meat quality specific to each chicken genotype.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104025"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001037/pdfft?md5=e58e4d6fd930d4878af4286f49df3063&pid=1-s2.0-S1319562X24001037-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141135906","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of renal protective gut microbiome derived-metabolites in diabetic chronic kidney disease: An integrated approach using network pharmacology and molecular docking 鉴定糖尿病慢性肾病患者肾脏保护性肠道微生物组衍生代谢物:利用网络药理学和分子对接的综合方法
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-05-23 DOI: 10.1016/j.sjbs.2024.104028
G.R. Saranya, Pragasam Viswanathan
{"title":"Identification of renal protective gut microbiome derived-metabolites in diabetic chronic kidney disease: An integrated approach using network pharmacology and molecular docking","authors":"G.R. Saranya,&nbsp;Pragasam Viswanathan","doi":"10.1016/j.sjbs.2024.104028","DOIUrl":"10.1016/j.sjbs.2024.104028","url":null,"abstract":"<div><p>Metabolites from the gut microbiota define molecules in the gut-kidney cross talks. However, the mechanistic pathway by which the kidneys actively sense gut metabolites and their impact on diabetic chronic kidney disease (DCKD) remains unclear. This study is an attempt to investigate the gut microbiome metabolites, their host targeting genes, and their mechanistic action against DCKD.<!--> <!-->Gut microbiome, metabolites, and host targets were extracted from the gutMgene database and metabolites from the PubChem database. DCKD targets were identified from DisGeNET, GeneCard, NCBI, and OMIM databases. Computational examination such as protein–protein interaction networks, enrichment pathway, identification of metabolites for potential targets using molecular docking, hubgene-microbes-metabolite-samplesource-substrate (HMMSS) network architecture were executed using Network analyst, ShinyGo, GeneMania, Cytoscape, Autodock tools. There were 574 microbial metabolites, 2861 DCKD targets, and 222 microbes targeting host genes. After screening, we obtained 27 final targets, which are used for computational examination. From enrichment analysis, we found NF-ΚB1, AKT1, EGFR, JUN, and RELA as the main regulators in the DCKD development through mitogen activated protein kinase (MAPK) pathway signalling. The (HMMSS) network analysis found <em>F.prausnitzi, B.adolescentis,</em> <!-->and <em>B.distasonis</em> <!-->probiotic bacteria<!--> <!-->that are found in the intestinal epithelium, colonic region, metabolize the substrates like tryptophan, other unknown substrates might have direct interaction with the NF-kB1 and epidermal growth factor receptor (EGFR) targets. On docking of these target proteins with 3- Indole propionic acid (IPA) showed high binding energy affinity of -5.9 kcal/mol and -7.4kcal/mol.<!--> <!-->From this study we identified, the 3 IPA produced by<!--> <em>F. prausnitzi A2-165</em> <!-->was found to have renal sensing properties inhibiting MAPK/NF-KB1 inflammatory pathway and would be useful in treating CKD in diabetics.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104028"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001062/pdfft?md5=8287de0f86f8d620b300fd345735a957&pid=1-s2.0-S1319562X24001062-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141189793","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
IC - Editorial Board IC - 编辑委员会
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-08-20 DOI: 10.1016/S1319-562X(24)00128-1
{"title":"IC - Editorial Board","authors":"","doi":"10.1016/S1319-562X(24)00128-1","DOIUrl":"10.1016/S1319-562X(24)00128-1","url":null,"abstract":"","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104050"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001281/pdfft?md5=74799c9c443850ff385c7c08e4184f59&pid=1-s2.0-S1319562X24001281-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142021181","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Sprouted rough rice as an alternative to corn for growth, health performance and meat quality of broilers 用发芽糙米替代玉米,提高肉鸡的生长、健康表现和肉质
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-05-29 DOI: 10.1016/j.sjbs.2024.104034
Nguyen Hoang Qui, Nguyen Thuy Linh, Nguyen Thi Anh Thu
{"title":"Sprouted rough rice as an alternative to corn for growth, health performance and meat quality of broilers","authors":"Nguyen Hoang Qui,&nbsp;Nguyen Thuy Linh,&nbsp;Nguyen Thi Anh Thu","doi":"10.1016/j.sjbs.2024.104034","DOIUrl":"https://doi.org/10.1016/j.sjbs.2024.104034","url":null,"abstract":"<div><p>Sprouted rough rice (SR) is not commly used for poultry diets but it could be a potential replacement ingredient to improve nutritional value of feed. This study aimed to evaluate the growth performance, carcass quality, blood lipids, hepatic enzymes, and fatty acid profiles of broiler meat when corn was replaced with sprouted rough rice in the feed. A completely randomized design was used with four groups and six replicate groups with 10 birds per replicate. The 4 treatment groups were 0, 15, 40 and 45 % sprouted-rice-replacement of corn. Growth performance and carcass quality were highest when corn was replaced with 45 % SR (<em>p</em> &lt; 0.05). In particular, live weight and body weight gain increased linearly with increasing SR inclusion, whereas feed conversion ratio and feed intake linearly decreased with increasing SR (<em>p</em> &lt; 0.05). Carcass, thigh, and breast weights showed the same trend of increase (<em>p</em> &lt; 0.05). In addition, the pH of the thigh meat was significantly higher in diet with 45 % SR than in the other treatment groups. With increasing SR content, the weight of immune organs linearly increased, particularly the thymus and spleen (<em>p</em> &lt; 0.05). Additionally, the fatty acids examined including saturated fatty acids, unsaturated fatty acid, transfat were mostly highest when 30 or 45 % of corn was replaced with SR and linearly increased from 0 to 45 % of SR. There were no significant differences of linear relationships with cooking loss, or blood lipid and hepatic enzyme profiles between treatments (<em>p</em> &gt; 0.05). Replacing 45 % of corn in a broiler diet with SR could improve the growth and meat paramenters of broilers.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104034"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001128/pdfft?md5=f8a77e228fd9d93ee2f2d14e13b06ecc&pid=1-s2.0-S1319562X24001128-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141244666","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Investigating mechanistic insights of curcumin in blocking the Interleukin-8 signaling pathway associated with Breast Cancer: An in-silico approach 研究姜黄素阻断与乳腺癌相关的白细胞介素-8 信号通路的机理:一种内模拟方法
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-05-31 DOI: 10.1016/j.sjbs.2024.104035
Bader S. Alotaibi , Mohammed Ageeli Hakami , Ali Hazazi , Ahad Amer Alsaiari , Mohammad Khalid , Anam Beg
{"title":"Investigating mechanistic insights of curcumin in blocking the Interleukin-8 signaling pathway associated with Breast Cancer: An in-silico approach","authors":"Bader S. Alotaibi ,&nbsp;Mohammed Ageeli Hakami ,&nbsp;Ali Hazazi ,&nbsp;Ahad Amer Alsaiari ,&nbsp;Mohammad Khalid ,&nbsp;Anam Beg","doi":"10.1016/j.sjbs.2024.104035","DOIUrl":"https://doi.org/10.1016/j.sjbs.2024.104035","url":null,"abstract":"<div><p>Interleukin-8 (IL-8) is a chemokine, a type of signaling molecule that has a role in immunological responses and inflammation. In recent years, IL-8 is additionally related to cancer growth and recurrence. Breast cancer growth, progression, and metastatic development<!--> <!-->are all linked to IL-8. Breast cancer cells are known to develop faster when IL-8 stimulates their proliferation and survival. It can also cause angiogenesis, or the creation of new blood vessels, which is necessary for tumor nutrition and growth. IL-8 and curcumin have been subjects of interest in drug design, particularly in the context of inflammation-related disorders and cancer. This study aims to give an overview of the role of IL-8. Inhibitor-based treatment approaches were being used to target IL-8 with curcumin. Molecular docking method was employed to find a potential interaction to supress competitive inhibition of IL-8 with curcumin. PASS analysis and ADMET characteristics were also being carried out. In the end, IL-8 complexed with curcumin is chosen for MD simulations. Overall, our results showed that during the simulation, the complex stayed comparatively stable. It is also possible to investigate curcumin further as a possible treatment option. The combined results imply that IL-8 and their genetic alterations can be studied in precision cancer therapeutic treatments, utilizing target-driven therapy and early diagnosis.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104035"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X2400113X/pdfft?md5=d61d6a10fa889500361791ba642fc9b4&pid=1-s2.0-S1319562X2400113X-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141286323","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Gene-gene and gene-environmental interaction of dopaminergic system genes in Pakistani children with attention deficit hyperactivity disorder 巴基斯坦注意力缺陷多动障碍儿童多巴胺能系统基因的基因-基因和基因-环境相互作用
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-06-21 DOI: 10.1016/j.sjbs.2024.104045
Moin Ahmed Ansari , Habib Ahmed Naqvi , Feriha Fatima Khidri , Aatir Hanif Rajput , Ambar Mahmood , Ali Muhammad Waryah
{"title":"Gene-gene and gene-environmental interaction of dopaminergic system genes in Pakistani children with attention deficit hyperactivity disorder","authors":"Moin Ahmed Ansari ,&nbsp;Habib Ahmed Naqvi ,&nbsp;Feriha Fatima Khidri ,&nbsp;Aatir Hanif Rajput ,&nbsp;Ambar Mahmood ,&nbsp;Ali Muhammad Waryah","doi":"10.1016/j.sjbs.2024.104045","DOIUrl":"10.1016/j.sjbs.2024.104045","url":null,"abstract":"<div><h3>Background</h3><p>Attention deficit hyperactivity disorder (ADHD) is a neurodevelopmental disorder influenced by genetic and environmental factors. This study examined the specific gene variants, dopamine transporter 1 (DAT1) rs6350, dopamine receptor D3 (DRD3) rs6280, dopamine receptor D2 (DRD2) rs6277, and catechol-O-methyltransferase (COMT) rs4633, in relation to ADHD among Pakistani children by exploring the potential gene-gene and gene-environment interactions.</p></div><div><h3>Methods</h3><p>A total of 100 cases of ADHD and 100 healthy children were recruited. The tetra-primer amplification refractory mutation system (ARMS) assays were designed for genotyping the selected variants in both groups, and their association with ADHD was determined in different genetic models. Gene-gene and gene-environmental interactions were determined by the multifactor dimensionality reduction (MDR) method.</p></div><div><h3>Results</h3><p>The DAT1 rs6350 SNV AA genotype showed a significantly increased risk for ADHD in the codominant and recessive models. Conversely, the AG genotype demonstrated a protective factor for ADHD in the codominant and overdominant models. The DRD3 rs6280 T allele exhibited a decreased risk for ADHD, and the TT genotype showed a reduced risk in the recessive and log-additive models. No association between the DRD2 rs6277 and COMT rs4633 SNVs with ADHD was found in our population. The MDR analysis of the best three-fold interaction model showed redundancy between DAT1 rs6350 and DRD3 rs6280; however, the risk was increased with the gender variable, which showed a weak synergistic interaction with these SNVs.</p></div><div><h3>Conclusion</h3><p>Genes associated with dopaminergic neurotransmission may contribute to the occurrence of ADHD. Furthermore, gene-gene and gene-environmental interactions may increase ADHD susceptibility.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104045"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001232/pdfft?md5=419e27b38c1d64d72c5e443be90934d9&pid=1-s2.0-S1319562X24001232-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141506779","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Prevalence and effect of PIK3CA H1047R somatic mutation among Indian head and neck cancer patients 印度头颈癌患者中 PIK3CA H1047R 体细胞突变的发生率及其影响
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-05-27 DOI: 10.1016/j.sjbs.2024.104029
Arjita Ghosh , Anbalagan Moorthy
{"title":"Prevalence and effect of PIK3CA H1047R somatic mutation among Indian head and neck cancer patients","authors":"Arjita Ghosh ,&nbsp;Anbalagan Moorthy","doi":"10.1016/j.sjbs.2024.104029","DOIUrl":"10.1016/j.sjbs.2024.104029","url":null,"abstract":"<div><p><em>PIK3CA</em> is one among the several mutated genes in cancer<em>,</em> including head and neck squamous cell carcinoma (HNSCC). H1047R is a hotspot somatic mutation in <em>PIK3CA</em> that occurs most frequently in several forms of cancers. Distribution of <em>PIK3CA</em> H1047R mutation in Indian HNSCC patients was screened and its effect on disease progression and response to treatment was analysed in this study. Genomic DNA was extracted from tumour biopsies of HNSCC patients (n = 48) and polymerase chain reaction coupled restriction fragment length polymorphism (PCR-RFLP) technique was used to screen for the mutation. Overall survival (OS) and Progression-free survival (PFS) of the patients were calculated in order to study effect of this mutation on survival and response to treatment respectively. Results showed that irrespective of patients’ criteria, twenty-five patients (52 %) carried a heterozygous form of mutation (His/Arg) and the rest (48 %) were wild type (His/His). The mean OS of the cohort with the mutation was 20.451 months (SE ± 1.710 months) while 26.31 months (SE ± 2.431) was in wild type population. PFS of the patients with the mutation was 18.612 months (SE ± 2.072), and for the wild type population, it was 26.31 months (SE ± 2.431). These observations suggest that Indian HNSCC patients with <em>PIK3CA</em> H1047R mutation have poor prognosis.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104029"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001074/pdfft?md5=010189d2eee7c627450ac69b13b1b2d9&pid=1-s2.0-S1319562X24001074-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141189987","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
LC-MS metabolomics and molecular docking approaches to identify antihyperglycemic and antioxidant compounds from Melastoma malabathricum L. Leaf 用 LC-MS 代谢组学和分子对接方法鉴定 Melastoma malabathricum L. 叶中的抗高血糖和抗氧化化合物
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-08-01 Epub Date: 2024-06-14 DOI: 10.1016/j.sjbs.2024.104047
Oke Anandika Lestari , Nurheni Sri Palupi , Agus Setiyono , Feri Kusnandar , Nancy Dewi Yuliana
{"title":"LC-MS metabolomics and molecular docking approaches to identify antihyperglycemic and antioxidant compounds from Melastoma malabathricum L. Leaf","authors":"Oke Anandika Lestari ,&nbsp;Nurheni Sri Palupi ,&nbsp;Agus Setiyono ,&nbsp;Feri Kusnandar ,&nbsp;Nancy Dewi Yuliana","doi":"10.1016/j.sjbs.2024.104047","DOIUrl":"10.1016/j.sjbs.2024.104047","url":null,"abstract":"<div><p>The dried leaves of Melastoma malabathricum L.<em>,</em> locally named Karamunting or Senduduk, is traditionally consumed in many regions in Indonesia as herbal tea to cure different illnesses, including diabetes. To date, information on the compounds responsible for their antidiabetic activity is still very rare. The study aimed to identify bioactive compounds of M. malabathricum L. leaves using LC-MS based metabolomics and molecular docking approaches. The leaves brewed with different methods were subjected to LC−MS measurements and several bioactivity tests (<em>in vivo</em> and <em>in vitro</em> antihyperglycemic, and <em>in vitro</em> antioxidant). LC−MS data were linked to the activity data using multivariate data analysis. Molecular docking using alpha-glucosidase, alpha-amylase, and insulin receptor as protein targets was used to verify the results and study the interaction between the identified compound and protein targets. As results, isoquercetin and myricitrin were identified as compounds strongly associated with alpha-amylase inhibitors, while rutin and epicatechin were identified as alpha-glucosidase inhibitors. Quercitrin, citric acid, quercetin, epicatechin, isoquercitrin, and 7-hydroxycoumarine were strongly correlated with both antihyperglycemic and antioxidant activities. The results of metabolomics were confirmed with molecular docking studies, which showed that some of these compounds acted as competitive inhibitors, while others acted as non-competitive ones. Possible synergism between epicatechin and citric acid in their interaction with IR was detected. Metabolomics combined with molecular docking efficiently identified and confirmed several antihyperglycemic and antioxidant compounds from M. malabathricum L.<em>,</em> leaf. This study provides scientific evidence for the traditional use of M. malabathricum L. as an antidiabetic herbal.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 8","pages":"Article 104047"},"PeriodicalIF":4.4,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001256/pdfft?md5=cf1b4483980852d20c5e01007d4b9272&pid=1-s2.0-S1319562X24001256-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141398415","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Molecular and bacteriological investigations for the co-existence CRISPR/Cas system and β-lactamases of types extended-spectrum and carbapenemases in Multidrug, extensive drug and Pandrug-Resistant Klebsiella pneumoniae 耐多药、广谱耐药和泛耐药肺炎克雷伯菌中 CRISPR/Cas 系统与广谱和碳青霉烯酶型β-内酰胺酶共存的分子和细菌学研究
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-07-01 Epub Date: 2024-05-19 DOI: 10.1016/j.sjbs.2024.104022
Hekmat A. Owaid , Mushtak T.S. Al-Ouqaili
{"title":"Molecular and bacteriological investigations for the co-existence CRISPR/Cas system and β-lactamases of types extended-spectrum and carbapenemases in Multidrug, extensive drug and Pandrug-Resistant Klebsiella pneumoniae","authors":"Hekmat A. Owaid ,&nbsp;Mushtak T.S. Al-Ouqaili","doi":"10.1016/j.sjbs.2024.104022","DOIUrl":"https://doi.org/10.1016/j.sjbs.2024.104022","url":null,"abstract":"<div><p>The recent approach towards combating the antimicrobial resistance has led to the use of Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) and associated sequence to overcome the challenges of antimicrobial resistance. Thus, this study aimed to detect the underlying resistance mechanisms such as ESBLs and carbapenemases and whether there is a correlation between multidrug, extensive drug and pan drug resistance and the occurrence of CRISPR loci. A total of one hundred study isolates were subjected to antimicrobial susceptibility testing using the AST card of the Vitek technique to detect resistance patterns involving ESBLs and carbapenemase (CRE). An investigation of the genes encoding CRISPR/Cas systems using PCR was achieved. Out of 81 (81.0%) resistant <em>Klebsiella pneumoniae isolates</em>, 71 (71%) and 21 (21.0%) produced ESBLs and carbapenemases, respectively. Also, 53 (53.0%), 19 (19.0%) and 9 (9.0%) were MDR, XDR, and PDR respectively. It was noted that Cas1, Cas3, CRISPR1, CRISPR2 and CRISPR3 were positive in 38 (38.0%) of the isolates, while CRISPR1 for incomplete CRISPR1-Cas systems alone was detected in 78 (78.0%). Further, the number of intact CRISPR1, intact CRISPR2 and intact CRISPR3 types were 7 (27.0%), 34 (34%) and 18 (18.0%) respectively. It is concluded that antibiotic resistance levels were inversely correlated with the existence of CRISPR/Cas systems. The absence of the CRISPR/Cas system increases the prevalence of MDR, XDR and PDR in ESBL and carbapenem-producing <em>Klebsiella pneumoniae</em>. With the increase in the degree of antibiotic resistance (MDR, XDR to PDR), the occurrence ratio of the (CRISPR)/CRISPR-associated sequence decreased.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 7","pages":"Article 104022"},"PeriodicalIF":4.4,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24001001/pdfft?md5=aedf6c1287071abbcb50b2a2166ce6e6&pid=1-s2.0-S1319562X24001001-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141083974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A comprehensive investigation on alleviating oxidative stress and inflammation in hyperglycaemic conditions through in vitro experiments and computational analysis 通过体外实验和计算分析全面研究如何缓解高血糖条件下的氧化应激和炎症反应
IF 4.4 2区 生物学
Saudi Journal of Biological Sciences Pub Date : 2024-07-01 Epub Date: 2024-04-21 DOI: 10.1016/j.sjbs.2024.104003
Shehwaz Anwar , Ravindra Raut , Fahad A. Alhumaydhi
{"title":"A comprehensive investigation on alleviating oxidative stress and inflammation in hyperglycaemic conditions through in vitro experiments and computational analysis","authors":"Shehwaz Anwar ,&nbsp;Ravindra Raut ,&nbsp;Fahad A. Alhumaydhi","doi":"10.1016/j.sjbs.2024.104003","DOIUrl":"10.1016/j.sjbs.2024.104003","url":null,"abstract":"<div><p>Protein glycation, hyper-inflammatory reactions, and oxidative stress play a crucial role in the pathophysiology of numerous diseases. The current work evaluated the protective ability of ethyl alcohol extract of leaves from holy basil (<em>Ocimum sanctum</em> Linn) against inflammation, oxidative stress, glycation and advanced glycation endproducts formation.<!--> <!-->Various <em>in vitro</em> assays assessed prementioned properties of holy basil. In addition, molecular docking was conducted. The highest hydrogen peroxide reduction activity (72.7 %) and maximum percentage of DPPH scavenging (71.3 %) depicted its vigorous antioxidant abilities. Furthermore, it showed the most excellent protection against proteinase activity (67.247 %), prevention of denaturation of egg albumin (65.29 %), and BSA (bovine serum albumin) (68.87 %) with 600 µg/ml. Percent aggregation index (57.528 %), browning intensity (56.61 %), and amyloid structure (57.0 %) were all reduced significantly using 600 μg/ml of extract. Additionally, the antimicrobial potential was also confirmed. According to a molecular docking study, active leaf extract ingredients were found to bind with superoxide dismutase, catalase, and carbonic anhydrase. As a conclusion, <em>O. sanctum</em> has a variety of health-promoting properties that may reduce the severity of many diseases in diabetic patients. However, in order to ascertain the mechanisms of action of the components of its leaves in disease prevention, more thorough research based on pharmacological aspects is needed.</p></div>","PeriodicalId":21540,"journal":{"name":"Saudi Journal of Biological Sciences","volume":"31 7","pages":"Article 104003"},"PeriodicalIF":4.4,"publicationDate":"2024-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S1319562X24000810/pdfft?md5=39e764e5650318d15f11548e71abb7cd&pid=1-s2.0-S1319562X24000810-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140781366","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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