Retrovirology最新文献

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Editing out HIV: application of gene editing technology to achieve functional cure. 编辑HIV:应用基因编辑技术实现功能性治愈。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-12-18 DOI: 10.1186/s12977-021-00581-1
Jingna Xun, Xinyu Zhang, Shuyan Guo, Hongzhou Lu, Jun Chen
{"title":"Editing out HIV: application of gene editing technology to achieve functional cure.","authors":"Jingna Xun,&nbsp;Xinyu Zhang,&nbsp;Shuyan Guo,&nbsp;Hongzhou Lu,&nbsp;Jun Chen","doi":"10.1186/s12977-021-00581-1","DOIUrl":"https://doi.org/10.1186/s12977-021-00581-1","url":null,"abstract":"<p><p>Highly active antiretroviral therapy (HAART) successfully suppresses human immunodeficiency virus (HIV) replication and improves the quality of life of patients living with HIV. However, current HAART does not eradicate HIV infection because an HIV reservoir is established in latently infected cells and is not recognized by the immune system. The successful curative treatment of the Berlin and London patients following bone marrow transplantation inspired researchers to identify an approach for the functional cure of HIV. As a promising technology, gene editing-based strategies have attracted considerable attention and sparked much debate. Herein, we discuss the development of different gene editing strategies in the functional cure of HIV and highlight the potential for clinical applications prospects.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":" ","pages":"39"},"PeriodicalIF":3.3,"publicationDate":"2021-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8684261/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39613926","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Trim28 acts as restriction factor of prototype foamy virus replication by modulating H3K9me3 marks and destabilizing the viral transactivator Tas. Trim28通过调节H3K9me3标记和破坏病毒反激活子Tas的稳定性,作为泡沫原型病毒复制的限制因子。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-12-13 DOI: 10.1186/s12977-021-00584-y
Peipei Yuan, Jun Yan, Shuang Wang, Yang Guo, Xueyan Xi, Song Han, Jun Yin, Biwen Peng, Xiaohua He, Jochen Bodem, Wanhong Liu
{"title":"Trim28 acts as restriction factor of prototype foamy virus replication by modulating H3K9me3 marks and destabilizing the viral transactivator Tas.","authors":"Peipei Yuan,&nbsp;Jun Yan,&nbsp;Shuang Wang,&nbsp;Yang Guo,&nbsp;Xueyan Xi,&nbsp;Song Han,&nbsp;Jun Yin,&nbsp;Biwen Peng,&nbsp;Xiaohua He,&nbsp;Jochen Bodem,&nbsp;Wanhong Liu","doi":"10.1186/s12977-021-00584-y","DOIUrl":"https://doi.org/10.1186/s12977-021-00584-y","url":null,"abstract":"<p><strong>Background: </strong>Prototype foamy virus (PFV) is nonpathogenic complex retroviruses that express a transcriptional transactivator Tas, which is essential for the activity of viral long terminal repeat (LTR) promoter and internal promoter (IP). Tripartite motif-containing protein 28 (Trim28) is well known as a scaffold protein normally enriched in gene promoter region to repress transcription. We sought to determine if whether Trim28 could be enriched in PFV promoter region to participate the establishment of PFV latency infection.</p><p><strong>Results: </strong>In this study, we show that Trim28 restricts Tas-dependent transactivation activity of PFV promoter and negatively regulates PFV replication. Trim28 was found to be enriched in LTR instead of IP promoter regions of PFV genome and contribute to the maintenance of histone H3K9me3 marks on the LTR promoter. Furthermore, Trim28 interacts with Tas and colocalizes with Tas in the nucleus. Besides, we found that Trim28, an E3 ubiquitin ligase, binds directly to and promotes Tas for ubiquitination and degradation. And the RBCC domain of Trim28 is required for the ubiquitination and degradation of Tas.</p><p><strong>Conclusions: </strong>Collectively, our findings not only identify a host factor Trim28 negatively inhibits PFV replication by acting as transcriptional restriction factor enriched in viral LTR promoter through modulating H3K9me3 mark here, but also reveal that Trim28 mediated ubiquitin proteasome degradation of Tas as a mechanism underlying Trim28 restricts Tas-dependent transcription activity of PFV promoter and PFV replication. These findings provide new insights into the process of PFV latency establishment.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":" ","pages":"38"},"PeriodicalIF":3.3,"publicationDate":"2021-12-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8670036/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39834645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 9
HIV-1 integrase binding to genomic RNA 5'-UTR induces local structural changes in vitro and in virio. 结合基因组RNA 5'-UTR的HIV-1整合酶在体外和体内诱导局部结构变化。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-11-22 DOI: 10.1186/s12977-021-00582-0
Shuohui Liu, Pratibha C Koneru, Wen Li, Chathuri Pathirage, Alan N Engelman, Mamuka Kvaratskhelia, Karin Musier-Forsyth
{"title":"HIV-1 integrase binding to genomic RNA 5'-UTR induces local structural changes in vitro and in virio.","authors":"Shuohui Liu,&nbsp;Pratibha C Koneru,&nbsp;Wen Li,&nbsp;Chathuri Pathirage,&nbsp;Alan N Engelman,&nbsp;Mamuka Kvaratskhelia,&nbsp;Karin Musier-Forsyth","doi":"10.1186/s12977-021-00582-0","DOIUrl":"https://doi.org/10.1186/s12977-021-00582-0","url":null,"abstract":"<p><strong>Background: </strong>During HIV-1 maturation, Gag and Gag-Pol polyproteins are proteolytically cleaved and the capsid protein polymerizes to form the honeycomb capsid lattice. HIV-1 integrase (IN) binds the viral genomic RNA (gRNA) and impairment of IN-gRNA binding leads to mis-localization of the nucleocapsid protein (NC)-condensed viral ribonucleoprotein complex outside the capsid core. IN and NC were previously demonstrated to bind to the gRNA in an orthogonal manner in virio; however, the effect of IN binding alone or simultaneous binding of both proteins on gRNA structure is not yet well understood.</p><p><strong>Results: </strong>Using crosslinking-coupled selective 2'-hydroxyl acylation analyzed by primer extension (XL-SHAPE), we characterized the interaction of IN and NC with the HIV-1 gRNA 5'-untranslated region (5'-UTR). NC preferentially bound to the packaging signal (Psi) and a UG-rich region in U5, irrespective of the presence of IN. IN alone also bound to Psi but pre-incubation with NC largely abolished this interaction. In contrast, IN specifically bound to and affected the nucleotide (nt) dynamics of the apical loop of the transactivation response element (TAR) and the polyA hairpin even in the presence of NC. SHAPE probing of the 5'-UTR RNA in virions produced from allosteric IN inhibitor (ALLINI)-treated cells revealed that while the global secondary structure of the 5'-UTR remained unaltered, the inhibitor treatment induced local reactivity differences, including changes in the apical loop of TAR that are consistent with the in vitro results.</p><p><strong>Conclusions: </strong>Overall, the binding interactions of NC and IN with the 5'-UTR are largely orthogonal in vitro. This study, together with previous probing experiments, suggests that IN and NC binding in vitro and in virio lead to only local structural changes in the regions of the 5'-UTR probed here. Accordingly, disruption of IN-gRNA binding by ALLINI treatment results in local rather than global secondary structure changes of the 5'-UTR in eccentric virus particles.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":"18 1","pages":"37"},"PeriodicalIF":3.3,"publicationDate":"2021-11-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8609798/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10449602","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
An ancient retroviral RNA element hidden in mammalian genomes and its involvement in co-opted retroviral gene regulation. 隐藏在哺乳动物基因组中的一种古老的逆转录病毒RNA元件及其参与增选逆转录病毒基因调控。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-11-10 DOI: 10.1186/s12977-021-00580-2
Koichi Kitao, So Nakagawa, Takayuki Miyazawa
{"title":"An ancient retroviral RNA element hidden in mammalian genomes and its involvement in co-opted retroviral gene regulation.","authors":"Koichi Kitao,&nbsp;So Nakagawa,&nbsp;Takayuki Miyazawa","doi":"10.1186/s12977-021-00580-2","DOIUrl":"https://doi.org/10.1186/s12977-021-00580-2","url":null,"abstract":"<p><strong>Background: </strong>Retroviruses utilize multiple unique RNA elements to control RNA processing and translation. However, it is unclear what functional RNA elements are present in endogenous retroviruses (ERVs). Gene co-option from ERVs sometimes entails the conservation of viral cis-elements required for gene expression, which might reveal the RNA regulation in ERVs.</p><p><strong>Results: </strong>Here, we characterized an RNA element found in ERVs consisting of three specific sequence motifs, called SPRE. The SPRE-like elements were found in different ERV families but not in any exogenous viral sequences examined. We observed more than a thousand of copies of the SPRE-like elements in several mammalian genomes; in human and marmoset genomes, they overlapped with lineage-specific ERVs. SPRE was originally found in human syncytin-1 and syncytin-2. Indeed, several mammalian syncytin genes: mac-syncytin-3 of macaque, syncytin-Ten1 of tenrec, and syncytin-Car1 of Carnivora, contained the SPRE-like elements. A reporter assay revealed that the enhancement of gene expression by SPRE depended on the reporter genes. Mutation of SPRE impaired the wild-type syncytin-2 expression while the same mutation did not affect codon-optimized syncytin-2, suggesting that SPRE activity depends on the coding sequence.</p><p><strong>Conclusions: </strong>These results indicate multiple independent invasions of various mammalian genomes by retroviruses harboring SPRE-like elements. Functional SPRE-like elements are found in several syncytin genes derived from these retroviruses. This element may facilitate the expression of viral genes, which were suppressed due to inefficient codon frequency or repressive elements within the coding sequences. These findings provide new insights into the long-term evolution of RNA elements and molecular mechanisms of gene expression in retroviruses.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":" ","pages":"36"},"PeriodicalIF":3.3,"publicationDate":"2021-11-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8579622/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39870711","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Diverse antiviral IgG effector activities are predicted by unique biophysical antibody features. 独特的生物物理抗体特征预测了多种抗病毒IgG效应物的活性。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-10-30 DOI: 10.1186/s12977-021-00579-9
Hao D Cheng, Karen G Dowell, Chris Bailey-Kellogg, Brittany A Goods, J Christopher Love, Guido Ferrari, Galit Alter, Johannes Gach, Donald N Forthal, George K Lewis, Kelli Greene, Hongmei Gao, David C Montefiori, Margaret E Ackerman
{"title":"Diverse antiviral IgG effector activities are predicted by unique biophysical antibody features.","authors":"Hao D Cheng,&nbsp;Karen G Dowell,&nbsp;Chris Bailey-Kellogg,&nbsp;Brittany A Goods,&nbsp;J Christopher Love,&nbsp;Guido Ferrari,&nbsp;Galit Alter,&nbsp;Johannes Gach,&nbsp;Donald N Forthal,&nbsp;George K Lewis,&nbsp;Kelli Greene,&nbsp;Hongmei Gao,&nbsp;David C Montefiori,&nbsp;Margaret E Ackerman","doi":"10.1186/s12977-021-00579-9","DOIUrl":"https://doi.org/10.1186/s12977-021-00579-9","url":null,"abstract":"<p><strong>Background: </strong>The critical role of antibody Fc-mediated effector functions in immune defense has been widely reported in various viral infections. These effector functions confer cellular responses through engagement with innate immune cells. The precise mechanism(s) by which immunoglobulin G (IgG) Fc domain and cognate receptors may afford protection are poorly understood, however, in the context of HIV/SHIV infections. Many different in vitro assays have been developed and utilized to measure effector functions, but the extent to which these assays capture distinct antibody activities has not been fully elucidated.</p><p><strong>Results: </strong>In this study, six Fc-mediated effector function assays and two biophysical antibody profiling assays were performed on a common set of samples from HIV-1 infected and vaccinated subjects. Biophysical antibody profiles supported robust prediction of diverse IgG effector functions across distinct Fc-mediated effector function assays. While a number of assays showed correlated activities, supervised machine learning models indicated unique antibody features as primary contributing factors to the associated effector functions. Additional experiments established the mechanistic relevance of relationships discovered using this unbiased approach.</p><p><strong>Conclusions: </strong>In sum, this study provides better resolution on the diversity and complexity of effector function assays, offering a clearer perspective into this family of antibody mechanisms of action to inform future HIV-1 treatment and vaccination strategies.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":"18 1","pages":"35"},"PeriodicalIF":3.3,"publicationDate":"2021-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8557579/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10871265","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
Integration of SARS-CoV-2 RNA in infected human cells by retrotransposons: an unlikely hypothesis and old viral relationships. 通过反转录转座子将SARS-CoV-2 RNA整合到受感染的人类细胞中:一个不太可能的假设和旧的病毒关系
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-10-29 DOI: 10.1186/s12977-021-00578-w
Nicole Grandi, Enzo Tramontano, Ben Berkhout
{"title":"Integration of SARS-CoV-2 RNA in infected human cells by retrotransposons: an unlikely hypothesis and old viral relationships.","authors":"Nicole Grandi,&nbsp;Enzo Tramontano,&nbsp;Ben Berkhout","doi":"10.1186/s12977-021-00578-w","DOIUrl":"https://doi.org/10.1186/s12977-021-00578-w","url":null,"abstract":"<p><p>Zhang et al. (Proc Natl Acad Sci 118:e2105968118, 2021) recently reported that SARS-CoV-2 RNA can be retrotranscribed and integrated into the DNA of human cells by the L1 retrotransposon machinery. This phenomenon could cause persistence of viral sequences in patients and may explain the prolonged PCR-positivity of SARS-CoV-2 infected patients, even long after the phase of active virus replication has ended. This commentary does critically review the available data on this topic and discusses them in the context of findings made for other exogenous viruses and ancestral endogenous retroviral elements.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":" ","pages":"34"},"PeriodicalIF":3.3,"publicationDate":"2021-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8554740/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39663074","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
HIV-1 capsid variability: viral exploitation and evasion of capsid-binding molecules. HIV-1衣壳变异性:病毒利用和逃避衣壳结合分子。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-10-26 DOI: 10.1186/s12977-021-00577-x
Akatsuki Saito, Masahiro Yamashita
{"title":"HIV-1 capsid variability: viral exploitation and evasion of capsid-binding molecules.","authors":"Akatsuki Saito,&nbsp;Masahiro Yamashita","doi":"10.1186/s12977-021-00577-x","DOIUrl":"https://doi.org/10.1186/s12977-021-00577-x","url":null,"abstract":"<p><p>The HIV-1 capsid, a conical shell encasing viral nucleoprotein complexes, is involved in multiple post-entry processes during viral replication. Many host factors can directly bind to the HIV-1 capsid protein (CA) and either promote or prevent HIV-1 infection. The viral capsid is currently being explored as a novel target for therapeutic interventions. In the past few decades, significant progress has been made in our understanding of the capsid-host interactions and mechanisms of action of capsid-targeting antivirals. At the same time, a large number of different viral capsids, which derive from many HIV-1 mutants, naturally occurring variants, or diverse lentiviruses, have been characterized for their interactions with capsid-binding molecules in great detail utilizing various experimental techniques. This review provides an overview of how sequence variation in CA influences phenotypic properties of HIV-1. We will focus on sequence differences that alter capsid-host interactions and give a brief account of drug resistant mutations in CA and their mutational effects on viral phenotypes. Increased knowledge of the sequence-function relationship of CA helps us deepen our understanding of the adaptive potential of the viral capsid.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":" ","pages":"32"},"PeriodicalIF":3.3,"publicationDate":"2021-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8549334/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39563052","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Altered Env conformational dynamics as a mechanism of resistance to peptide-triazole HIV-1 inactivators. 改变的环境构象动力学作为对肽-三唑类HIV-1灭活剂的抗性机制。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-10-09 DOI: 10.1186/s12977-021-00575-z
Shiyu Zhang, Andrew P Holmes, Alexej Dick, Adel A Rashad, Lucía Enríquez Rodríguez, Gabriela A Canziani, Michael J Root, Irwin M Chaiken
{"title":"Altered Env conformational dynamics as a mechanism of resistance to peptide-triazole HIV-1 inactivators.","authors":"Shiyu Zhang,&nbsp;Andrew P Holmes,&nbsp;Alexej Dick,&nbsp;Adel A Rashad,&nbsp;Lucía Enríquez Rodríguez,&nbsp;Gabriela A Canziani,&nbsp;Michael J Root,&nbsp;Irwin M Chaiken","doi":"10.1186/s12977-021-00575-z","DOIUrl":"https://doi.org/10.1186/s12977-021-00575-z","url":null,"abstract":"<p><strong>Background: </strong>We previously developed drug-like peptide triazoles (PTs) that target HIV-1 Envelope (Env) gp120, potently inhibit viral entry, and irreversibly inactivate virions. Here, we investigated potential mechanisms of viral escape from this promising class of HIV-1 entry inhibitors.</p><p><strong>Results: </strong>HIV-1 resistance to cyclic (AAR029b) and linear (KR13) PTs was obtained by dose escalation in viral passaging experiments. High-level resistance for both inhibitors developed slowly (relative to escape from gp41-targeted C-peptide inhibitor C37) by acquiring mutations in gp120 both within (Val255) and distant to (Ser143) the putative PT binding site. The similarity in the resistance profiles for AAR029b and KR13 suggests that the shared IXW pharmacophore provided the primary pressure for HIV-1 escape. In single-round infectivity studies employing recombinant virus, V255I/S143N double escape mutants reduced PT antiviral potency by 150- to 3900-fold. Curiously, the combined mutations had a much smaller impact on PT binding affinity for monomeric gp120 (four to ninefold). This binding disruption was entirely due to the V255I mutation, which generated few steric clashes with PT in molecular docking. However, this minor effect on PT affinity belied large, offsetting changes to association enthalpy and entropy. The escape mutations had negligible effect on CD4 binding and utilization during entry, but significantly altered both binding thermodynamics and inhibitory potency of the conformationally-specific, anti-CD4i antibody 17b. Moreover, the escape mutations substantially decreased gp120 shedding induced by either soluble CD4 or AAR029b.</p><p><strong>Conclusions: </strong>Together, the data suggest that the escape mutations significantly modified the energetic landscape of Env's prefusogenic state, altering conformational dynamics to hinder PT-induced irreversible inactivation of Env. This work therein reveals a unique mode of virus escape for HIV-1, namely, resistance by altering the intrinsic conformational dynamics of the Env trimer.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":"18 1","pages":"31"},"PeriodicalIF":3.3,"publicationDate":"2021-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8501640/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10169211","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Arginyl-tRNA-protein transferase 1 contributes to governing optimal stability of the human immunodeficiency virus type 1 core. 精氨酸- trna -蛋白转移酶1有助于控制人类免疫缺陷病毒1型核心的最佳稳定性。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-09-26 DOI: 10.1186/s12977-021-00574-0
Naoki Kishimoto, Ryosuke Okano, Ayano Akita, Satoshi Miura, Ayaka Irie, Nobutoki Takamune, Shogo Misumi
{"title":"Arginyl-tRNA-protein transferase 1 contributes to governing optimal stability of the human immunodeficiency virus type 1 core.","authors":"Naoki Kishimoto,&nbsp;Ryosuke Okano,&nbsp;Ayano Akita,&nbsp;Satoshi Miura,&nbsp;Ayaka Irie,&nbsp;Nobutoki Takamune,&nbsp;Shogo Misumi","doi":"10.1186/s12977-021-00574-0","DOIUrl":"https://doi.org/10.1186/s12977-021-00574-0","url":null,"abstract":"<p><strong>Background: </strong>The genome of human immunodeficiency virus type 1 (HIV-1) is encapsulated in a core consisting of viral capsid proteins (CA). After viral entry, the HIV-1 core dissociates and releases the viral genome into the target cell, this process is called uncoating. Uncoating of HIV-1 core is one of the critical events in viral replication and several studies show that host proteins positively or negatively regulate this process by interacting directly with the HIV-1 CA.</p><p><strong>Results: </strong>Here, we show that arginyl-tRNA-protein transferase 1 (ATE1) plays an important role in the uncoating process by governing the optimal core stability. Yeast two-hybrid screening of a human cDNA library identified ATE1 as an HIV-1-CA-interacting protein and direct interaction of ATE1 with Pr55<sup>gag</sup> and p160<sup>gag - pol</sup> via HIV-1 CA was observed by cell-based pull-down assay. ATE1 knockdown in HIV-1 producer cells resulted in the production of less infectious viruses, which have normal amounts of the early products of the reverse transcription reaction but reduced amounts of the late products of the reverse transcription. Interestingly, ATE1 overexpression in HIV-1 producer cells also resulted in the production of poor infectious viruses. Cell-based fate-of-capsid assay, a commonly used method for evaluating uncoating by measuring core stability, showed that the amounts of pelletable cores in cells infected with the virus produced from ATE1-knockdown cells increased compared with those detected in the cells infected with the control virus. In contrast, the amounts of pelletable cores in cells infected with the virus produced from ATE1-overexpressing cells decreased compared with those detected in the cells infected with the control virus.</p><p><strong>Conclusions: </strong>These results indicate that ATE1 expression levels in HIV-1 producer cells contribute to the adequate formation of a stable HIV-1 core. These findings provide insights into a novel mechanism of HIV-1 uncoating and revealed ATE1 as a new host factor regulating HIV-1 replication.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":" ","pages":"30"},"PeriodicalIF":3.3,"publicationDate":"2021-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8474785/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39473294","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
The HIV-1 capsid and reverse transcription. HIV-1衣壳和逆转录。
IF 3.3 3区 医学
Retrovirology Pub Date : 2021-09-25 DOI: 10.1186/s12977-021-00566-0
Christopher Aiken, Itay Rousso
{"title":"The HIV-1 capsid and reverse transcription.","authors":"Christopher Aiken,&nbsp;Itay Rousso","doi":"10.1186/s12977-021-00566-0","DOIUrl":"https://doi.org/10.1186/s12977-021-00566-0","url":null,"abstract":"<p><p>The viral capsid plays a key role in HIV-1 reverse transcription. Recent studies have demonstrated that the small molecule IP6 dramatically enhances reverse transcription in vitro by stabilizing the viral capsid. Reverse transcription results in marked changes in the biophysical properties of the capsid, ultimately resulting in its breakage and disassembly. Here we review the research leading to these advances and describe hypotheses for capsid-dependent HIV-1 reverse transcription and a model for reverse transcription-primed HIV-1 uncoating.</p>","PeriodicalId":21123,"journal":{"name":"Retrovirology","volume":" ","pages":"29"},"PeriodicalIF":3.3,"publicationDate":"2021-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC8466977/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39448133","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
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