Molecular Ecology最新文献

{"title":"Allopatric Speciation and Interspecific Gene Flow Driven by Niche Conservatism of Diploderma Tree Lizards in Taiwan.","authors":"Tzong-Han Lin, Zong-Yu Shen, Ming-Hsun Chou, Pei-Wei Sun, Chin-Chia Shen, Jen-Pan Huang, Si-Min Lin","doi":"10.1111/mec.17718","DOIUrl":"https://doi.org/10.1111/mec.17718","url":null,"abstract":"<p><p>Allopatric speciation is a widely accepted hypothesis for species distributed across geographic barriers. Meanwhile, niche conservatism, the tendency of species to retain their ancestral ecological traits, helps reinforce genetic differentiation by stabilising species distributions over time and reducing the role of competition in shaping range boundaries. In contrast, hybridisation can occur at the edges of distribution after secondary contact following climatic or geological events, leading to a reduction in genetic divergence between divergent lineages. In this study, we investigated the role of geographic barriers, niche conservatism and gene flow in the speciation history of Diploderma species in Taiwan, where geographically distinct taxa share similar environmental preferences. By using ddRAD-seq data, seven distinct genetic clusters were identified with two putatively new cryptic species in D. brevipes and D. polygonatum. Most sister species pairs share similar climatic niches based on niche equivalency and similarity tests. We further detected significant historical gene flow between lineages of D. brevipes and D. polygonatum, where secondary contact might have occurred because of palaeoclimate changes and historical demographic expansion. Our results demonstrate that niche conservatism does not always act in concert to strengthen the result of allopatric speciation; instead, it may also lead to gene flow between divergent lineages following secondary contact. On the other hand, postdivergence gene flow may be a creating force generating phenotypic diversity in sexually selected traits in our study system. The underestimated species diversity of Diploderma in Taiwan requires further taxonomic work in the future.</p>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":" ","pages":"e17718"},"PeriodicalIF":4.5,"publicationDate":"2025-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143571514","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Expression of Elongase- and Desaturase-Encoding Genes Shapes the Cuticular Hydrocarbon Profiles of Honey Bees.","authors":"Daniel Sebastián Rodríguez-León, Thomas Schmitt, María Alice Pinto, Markus Thamm, Ricarda Scheiner","doi":"10.1111/mec.17716","DOIUrl":"https://doi.org/10.1111/mec.17716","url":null,"abstract":"<p><p>Most terrestrial insects have a layer of cuticular hydrocarbons (CHCs) protecting them from desiccation and mediating chemical communication. The composition of these hydrocarbons is highly plastic and changes during their lifetime and with environmental conditions. How these changes in CHC composition are achieved is largely unknown. CHC profiles of Apis mellifera honey bees vary among castes, task groups and subspecies adapted to different climates. This makes A. mellifera an excellent model for studying the molecular mechanism underlying CHC biosynthesis. We correlated the expression of specific elongase- and desaturase-encoding genes with the CHC composition in bees performing different social tasks in two highly divergent A. mellifera subspecies. Elongases are enzymes that lengthen the hydrocarbon chain, while desaturases introduce double bonds in it. We evaluated the hypothesis that the expression of the genes encoding these enzymes determines CHC profiles of the worker bees. Our results revealed that the specificity of desaturases and elongases shapes the CHC profiles of worker bees performing different social tasks. Expression of the desaturase-encoding gene LOC100576797 and the elongase-encoding gene LOC550828 seemed to be strongly associated with the abundance of compounds that were characteristic of the CHC profile of nurse bees. In contrast, the compounds that characterised the CHC profiles of the forager bees seemed to be associated with the desaturase-encoding gene LOC551527 and the elongase-encoding gene LOC409638. Our data shed light on the genetic basis for task-specific CHC composition differences in social hymenopterans and paved the ground for unravelling the genetic underpinning of CHC biosynthesis.</p>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":" ","pages":"e17716"},"PeriodicalIF":4.5,"publicationDate":"2025-03-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143565727","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reduced-Representation Sequencing Detects Trans-Arctic Connectivity and Local Adaptation in Polar Cod (Boreogadus saida)","authors":"Sarah M. Maes,&nbsp;Marie L. Verheye,&nbsp;Caroline Bouchard,&nbsp;Enora Geslain,&nbsp;Bart Hellemans,&nbsp;Torild Johansen,&nbsp;Magnus Lucassen,&nbsp;Felix C. Mark,&nbsp;Anna H. Ólafsdóttir,&nbsp;Pauline Snoeijs-Leijonmalm,&nbsp;Daria Zelenina,&nbsp;MOSAiC Team Eco,&nbsp;Filip A. M. Volckaert,&nbsp;Henrik Christiansen,&nbsp;Hauke Flores","doi":"10.1111/mec.17706","DOIUrl":"10.1111/mec.17706","url":null,"abstract":"<p>Information on connectivity and genetic structure of marine organisms remains sparse in frontier ecosystems such as the Arctic Ocean. Filling these knowledge gaps becomes increasingly urgent, as the Arctic is undergoing rapid physical, ecological and socio-economic changes. The abundant and widely distributed polar cod (<i>Boreogadus saida</i>) is highly adapted to Arctic waters, and its larvae and juveniles live in close association with sea ice. Through a reduced-representation sequencing approach, this study explored the spatial genetic structure of polar cod at a circum-Arctic scale. Genomic variation was partitioned into neutral and adaptive components to respectively investigate genetic connectivity and local adaptation. Based on 922 high-quality single nucleotide polymorphism (SNP) markers genotyped in 611 polar cod, broad-scale differentiation was detected among three groups: (i) Beaufort –Chukchi seas, (ii) all regions connected by the Transpolar Drift, ranging from the Laptev Sea to Iceland, including the European Arctic and (iii) West Greenland. Patterns of neutral genetic structure suggested broadscale oceanographic and sea ice drift features (i.e., Beaufort Gyre and Transpolar Drift) as important drivers of connectivity. Genomic variation at 35 outlier loci indicated adaptive divergence of the West Greenland and the Beaufort–Chukchi Seas populations, possibly driven by environmental conditions. Sea ice decline and changing ocean currents can alter or disrupt connectivity between polar cod from the three genetic groups, potentially undermining their resilience to climate change, even in putative refugia, such as the Central Arctic Ocean and the Arctic Archipelago.</p>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":"34 7","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/mec.17706","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143555490","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"The Evolution of Locally Adaptive Chromosome Inversions in Mimulus guttatus.","authors":"Leslie M Kollar, Lauren E Stanley, Sunil K Kenchanmane Raju, David B Lowry, Chad E Niederhuth","doi":"10.1111/mec.17708","DOIUrl":"https://doi.org/10.1111/mec.17708","url":null,"abstract":"<p><p>Chromosomal inversion polymorphisms are ubiquitous across the diversity of diploid organisms and play a significant role in the evolution of adaptations in those species. Inversions are thought to operate as supergenes by trapping adaptive alleles at multiple linked loci through the suppression of recombination. While there is now considerable support for the supergene mechanism of inversion evolution, the extent to which inversions trap pre-existing adaptive genetic variation versus accumulate new adaptive variants over time remains unclear. In this study, we report new insights into the evolution of a locally adaptive chromosomal inversion polymorphism (inv_chr8A), which contributes to the adaptive divergence between coastal perennial and inland annual ecotypes of the yellow monkeyflower, Mimulus guttatus. This research was enabled by the sequencing, assembly and annotation of new annual and perennial genomes of M. guttatus using Oxford Nanopore long-read sequencing technology. In addition to the adaptive inv_chr8A inversion, we identified three other large inversion polymorphisms, including a previously unknown large inversion (inv_chr8B) nested within inv_chr8A. Through population genomic analyses, we determined that the nested inv_chr8B inversion is significantly older than the larger chromosomal inversion in which it resides. We also evaluated the potential role of key candidate genes underlying the phenotypic effects of inv_chr8A. These genes are involved in gibberellin biosynthesis and anthocyanin regulation. Although little evidence was found to suggest that inversion breakpoint mutations drive adaptive phenotypic effects, our findings do support the supergene mechanism of adaptation and suggest it may sometimes involve nested inversions that evolve at different times.</p>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":" ","pages":"e17708"},"PeriodicalIF":4.5,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143555491","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Otolith and Genomic Data Reveal Temporal Insights Into Stocking Across a Large River Basin in a Mobile, Long-Lived Australian Freshwater Fish Species","authors":"Katherine A. Harrisson,&nbsp;Luciano B. Beheregaray,&nbsp;Christopher M. Bice,&nbsp;Emily J. Booth,&nbsp;Chris J. Brauer,&nbsp;Gavin L. Butler,&nbsp;David Dawson,&nbsp;Olga Dudchenko,&nbsp;Benjamin G. Fanson,&nbsp;Graeme Hackett,&nbsp;Annique Harris,&nbsp;Matthew J. Jones,&nbsp;Parwinder Kaur,&nbsp;Wayne M. Koster,&nbsp;Kyne Krusic-Golub,&nbsp;Erez Lieberman Aiden,&nbsp;Jason A. Lieschke,&nbsp;Jarod Lyon,&nbsp;John R. Morrongiello,&nbsp;Nicholas P. Murphy,&nbsp;James O'Dwyer,&nbsp;Scott M. C. Raymond,&nbsp;Meaghan L. Rourke,&nbsp;Arron Strawbridge,&nbsp;Jason D. Thiem,&nbsp;Zeb Tonkin,&nbsp;Jian D. L. Yen,&nbsp;Brenton P. Zampatti","doi":"10.1111/mec.17714","DOIUrl":"10.1111/mec.17714","url":null,"abstract":"<p>Freshwater ecosystems and their biota are under increasing pressure from anthropogenic stressors. In response to declining fish stocks, hatchery and stocking programmes are widely implemented as core components of restoration and management strategies, with positive outcomes for some wild populations. Despite this, stocking remains contentious due to potential genetic and ecological risks to wild populations. Monitoring and evaluation of stocking outcomes are critical to ensuring the long-term sustainability of wild populations, but identification of stocked individuals post-release remains a key challenge, particularly for mobile species. In this study, we combined otolith (natal origin and age) and genomic data to identify stocked individuals and evaluate the genetic implications of stocking for a culturally and socioeconomically important and mobile freshwater fish, golden perch <i>Macquaria ambigua</i> (family: Percichthyidae), across Australia's Murray–Darling Basin (MDB). We also generated a chromosome-level genome assembly. Many close kin were detected across the MDB, increasing in prevalence over recent decades and mostly of hatchery origin. Rivers with many close kin were associated with low effective population sizes (<i>N</i>_e &lt; 100). Genetic signatures of stocking varied according to local context, being most pronounced in but not restricted to rivers considered functionally isolated for management purposes. Where fish are stocked into rivers that are part of the connected metapopulation, there is scope to modify current stocking practices to avoid over-representation of related stocked individuals. Increased focus on the genetic diversity of stocked fish is likely to promote the long-term persistence of golden perch in the wild.</p>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":"34 7","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-03-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/mec.17714","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143555489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Inferring Species Interactions From Co-occurrence Networks With Environmental DNA Metabarcoding Data in a Coastal Marine Food Web","authors":"Elizabeth Boyse,&nbsp;Kevin P. Robinson,&nbsp;Ian M. Carr,&nbsp;Elena Valsecchi,&nbsp;Maria Beger,&nbsp;Simon J. Goodman","doi":"10.1111/mec.17701","DOIUrl":"10.1111/mec.17701","url":null,"abstract":"<p>A good understanding of biotic interactions is necessary to accurately predict the vulnerability of ecosystems to climate change. Recently, co-occurrence networks built from environmental DNA (eDNA) metabarcoding data have arisen as a tool to explore interspecific interactions in ecological communities exposed to different human and environmental pressures. Such networks can identify environmentally driven relationships in microbial and eukaryotic communities, but whether inferred co-occurrences robustly represent biotic interactions remains unclear. Here, we tackle this challenge and compare spatio-temporal variability in the structure and complexity of inferred co-occurrence networks and food webs, using 60 eDNA samples covering vertebrates and other eukaryotes in a North Sea coastal ecosystem. We compare topological characteristics and identify highly connected species across spatial and temporal subsets to evaluate variance in community composition and structure. We find consistent trends in topological characteristics across eDNA-derived co-occurrence networks and food webs that support some ability for the co-occurrence networks to detect real ecological processes, despite trophic interactions forming a minority of significant co-occurrences. The lack of significant trophic interactions detected in co-occurrence networks may result from ecological complexities, such as generalist predators having flexible interactions or behavioural partitioning, the inability to distinguish age class with eDNA or co-occurrences being driven by non-trophic or abiotic interactions. We find support for using eDNA-derived co-occurrence networks to infer ecological interactions, but further work is needed to assess their power to reliably detect and differentiate different interaction types and overcome methodological limitations, such as species detection uncertainties, which could influence inferred ecosystem complexity.</p>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":"34 7","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/mec.17701","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539731","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Discovery of XY Sex Chromosomes in Mauremys mutica Provides Insights Into the Role of KDM6B Gene in Coexistence of Temperature-Dependent and Genetic Sex Determination","authors":"Jianjun Liu,&nbsp;Siqi Liu,&nbsp;Jinxiu Dong,&nbsp;Min Tang,&nbsp;Taiyue Li,&nbsp;Jiahui Li,&nbsp;Xinjiang Bu,&nbsp;Xingquan Xia,&nbsp;Huaxing Zhou,&nbsp;Liuwang Nie","doi":"10.1111/mec.17710","DOIUrl":"10.1111/mec.17710","url":null,"abstract":"<div>\u0000 \u0000 <p>The Asian yellow pond turtle (<i>Mauremys mutica</i>) has long been thought to lack dimorphic sex chromosomes, with prevailing theories suggesting a solely temperature-dependent sex determination (TSD) system. In this study, a male chromosome-level genomic sequence with a contig N50 of ~23.59 Mb was generated using a combination of both Nanopore and Hi-C sequencing technologies. We utilise a combination of bioinformatics and cytogenetic experimental validation to demonstrate that this species indeed possesses XY chromosomes, thereby correcting a longstanding misconception. The results suggest that the X chromosome of the Asian yellow pond turtle originated independently during later stages of evolution and underwent chromosomal rearrangements. Notably, it was observed that the sex chromosomes exhibited a significant repeat expansion, with 95.9% comprising repetitive sequences. This expansion is primarily driven by LINE/CR1 repeats, which account for 55.2% of the total length of the X chromosome. We found that the X chromosome underwent a lower rate of adaptive evolution, supporting the concept of the “slower-X” effect. We present a novel model concerning the <i>KDM6B</i>, which is located on both XY chromosomes, mediates a sex determination mechanism that coexists with TSD + XY in turtles. This study paves the way for further exploration into the complexities of sex determination and the evolutionary dynamics of sex chromosomes in turtles and potentially other reptiles.</p>\u0000 </div>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":"34 7","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539729","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Genetic Architecture of the Thermal Tolerance Landscape in Drosophila melanogaster","authors":"Juan Soto,&nbsp;Francisco Pinilla,&nbsp;Patricio Olguín,&nbsp;Luis E. Castañeda","doi":"10.1111/mec.17697","DOIUrl":"10.1111/mec.17697","url":null,"abstract":"<div>\u0000 \u0000 <p>Increased environmental temperatures associated with global warming strongly impact natural populations of ectothermic species. Therefore, it is crucial to understand the genetic basis and evolutionary potential of heat tolerance. However, heat tolerance and its genetic components depend on the methodology, making it difficult to predict the adaptive responses to global warming. Here, we measured the knockdown time for 100 lines from the <i>Drosophila</i> Genetic Reference Panel (DGRP) at four different static temperatures, and we estimated their thermal-death-time (TDT) curves, which incorporate the magnitude and the time of exposure to thermal stress, to determine the genetic basis of the thermal tolerance landscape. Through quantitative genetic analyses, the knockdown time showed a significant heritability at different temperatures and that its genetic correlations decreased as temperatures differences increased. Significant genotype-by-sex and genotype-by-environment interactions were noted for heat tolerance. We also discovered genetic variability for the two parameters of TDT: CT_max and thermal sensitivity. Taking advantage of the DGRP, we performed a GWAS and identified multiple variants associated with the TDT parameters, which mapped to genes related to signalling and developmental functions. We performed functional validations for some candidate genes using RNAi, which revealed that genes such as mam, KNCQ, or robo3 affect the knockdown time at a specific temperature but are not associated with the TDT parameters. In conlusion, the thermal tolerance landscape display genetic variation and plastic responses, which may facilitate the adaptation of <i>Drosophila</i> populations to a changing world.</p>\u0000 </div>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":"34 7","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539730","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Reproductive Barriers and Genomic Hotspots of Adaptation During Allopatric Species Divergence.","authors":"Riddhi Deshmukh, Saurav Baral, Muktai Kuwalekar, Athulya Girish Kizhakke, Krushnamegh Kunte","doi":"10.1111/mec.17703","DOIUrl":"https://doi.org/10.1111/mec.17703","url":null,"abstract":"<p><p>Theory predicts that in allopatric populations, genomic divergence and reproductive barriers may be driven by random genetic drift and thereby evolve slowly in large populations. However, local adaptation and divergence under selection may also play important roles, which remain poorly characterised. Here, we address three key questions in young allopatric species: (a) How widespread are genomic signatures of adaptive divergence?, (b) What is the functional space along which young sister species show divergence at the genomic level? and (c) How quickly might prezygotic and postzygotic reproductive barriers evolve? Analysis of 82 re-sequenced genomes of the Oriental Papilio polytes species group revealed surprisingly widespread hotspots of intense selection and selective sweeps at hundreds of genes, spanning all chromosomes, rather than divergence only in a few genomic islands. These genes are involved in diverse ecologically important adaptive functions such as wing development, colour patterning, courtship behaviour, mimicry, pheromone synthesis and olfaction, and host plant use and digestion of secondary metabolites, that could contribute to local adaptation and subsequent reproductive isolation. Divergence at such functional genes appeared to have evolved in conjunction with reproductive consequences: behavioural and hybridisation experiments revealed strong assortative mate preference (prezygotic barriers) as well as postzygotic barriers to hybridisation in timespans as short as 1.5 my, indicating that speciation was already complete rather than incipient. Our study thus demonstrates an underappreciated role of intense selection and potential local adaptation in creating genome-wide hotspots of rapid molecular evolution and divergence during differentiation and speciation in young allopatric species.</p>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":" ","pages":"e17703"},"PeriodicalIF":4.5,"publicationDate":"2025-03-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539732","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Climate Change Drives Long-Term Spatiotemporal Shifts in Red Noctiluca scintillans Blooms Along China's Coast","authors":"Xiangyuan Lin,&nbsp;Wenjia Hu,&nbsp;Kieng Soon Hii,&nbsp;Wupeng Xiao,&nbsp;Hongjian Tan,&nbsp;Lingqi Ma,&nbsp;Hala F. Mohamed,&nbsp;Rongsuo Cai,&nbsp;Jianhua Kang,&nbsp;Zhaohe Luo","doi":"10.1111/mec.17709","DOIUrl":"10.1111/mec.17709","url":null,"abstract":"<div>\u0000 \u0000 <p>Climate change has significantly altered the spatiotemporal distribution and phenology of marine organisms, yet the long-term trends and mechanisms driving these changes remain insufficiently understood. In this study, we analysed historical <i>Noctiluca scintillans</i> bloom data from coastal China (1933, 1952, 1981–2023), sea surface temperature (SST) records from the past 40 years, and 509 field samples using Single Molecule Real-Time (SMRT) sequencing (2019–2024). Our results indicate that SST is the primary driver of <i>N. scintillans</i> blooms, exhibiting a nonlinear unimodal correlation. Long-term SST warming has caused a northward shift in bloom locations, aligning with the 21.9°C–22.7°C isotherms, as reflected by the increasing average latitudes of bloom occurrences. Over the past 4 decades, bloom frequency and duration have followed an overall increasing trend, displaying an approximate 10-year cyclical pattern. Ocean warming has also contributed to earlier bloom initiation, extended peak bloom periods and delayed bloom termination, shaping the long-term dynamics of <i>N. scintillans</i> blooms. SMRT sequencing confirmed that local <i>N. scintillans</i> populations persist year-round, serving as latent seed sources that can rapidly bloom when environmental conditions become favourable. These findings provide critical insights into the dynamics of harmful algal blooms in the context of climate change and lay a foundation for future ecological and environmental research.</p>\u0000 </div>","PeriodicalId":210,"journal":{"name":"Molecular Ecology","volume":"34 7","pages":""},"PeriodicalIF":4.5,"publicationDate":"2025-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539728","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}