PhotosyntheticaPub Date : 2025-03-27eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.009
Q Xia, H Tang, J L Tan, S I Allakhverdiev, Y Guo
{"title":"Determination of rice (<i>Oryza sativa</i> L.) drought stress levels based on chlorophyll <i>a</i> fluorescence through independent component analysis.","authors":"Q Xia, H Tang, J L Tan, S I Allakhverdiev, Y Guo","doi":"10.32615/ps.2025.009","DOIUrl":"https://doi.org/10.32615/ps.2025.009","url":null,"abstract":"<p><p>Sensing rice drought stress is crucial for agriculture, and chlorophyll <i>a</i> fluorescence (ChlF) is often used. However, existing techniques usually rely on defined feature points on the OJIP induction curve, which ignores the rich physiological information in the entire curve. Independent Component Analysis (ICA) can effectively preserve independent features, making it suitable for capturing drought-induced physiological changes. This study applies ICA and Support Vector Machine (SVM) to classify drought levels using the entire OJIP curve. The results show that the 20-dimensional ChlF features obtained by ICA provide superior classification performance, with <i>Accuracy</i>, <i>Precision</i>, <i>Recall</i>, <i>F1</i>-<i>score</i>, and <i>Kappa</i> coefficient improving by 18.15%, 0.18, 0.17, 0.17, and 0.22, respectively, compared to the entire curve. This work provides a rice drought stress levels determination method and highlights the importance of applying dimension reduction methods for ChlF analysis. This work is expected to enhance stress detection using ChlF.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"73-80"},"PeriodicalIF":2.1,"publicationDate":"2025-03-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012420/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144035493","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-03-14eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.005
N T Ndhlovu, T N Khuzwayo, F V Minibayeva, R P Beckett
{"title":"Subtropical lichens from the Afromontane can display rapid photosynthetic acclimation to simulated climate change.","authors":"N T Ndhlovu, T N Khuzwayo, F V Minibayeva, R P Beckett","doi":"10.32615/ps.2025.005","DOIUrl":"https://doi.org/10.32615/ps.2025.005","url":null,"abstract":"<p><p>Afromontane forests are an important part of the KwaZulu Natal region of southern Africa, having a distinctive flora with a high proportion of endemic species, and lichens are keystone members. Unlike other continental areas, KwaZulu Natal climate change is predicted to increase rainfall and cloudiness. In the present study, hydrated Afromontane lichens from both exposed and shaded microhabitats were given either constant [100 µmol(photon) m<sup>-2</sup> s<sup>-1</sup>] or fluctuating [0, 200, 0 µmol(photon) m<sup>-2</sup> s<sup>-1</sup>] light for 8 h a day for 3 d and changes monitored in nonphotochemical quenching (NPQ) and rates of photosynthetic electron transport. In sun but not shade collections, NPQ strongly increased following treatment with constant and fluctuating light. It seems likely that CO<sub>2</sub> fixation may be reduced in moist thalli, and the increase in NPQ may reduce ROS formation during exposure to light while hydrated. Sun lichens can readily modify their NPQ in response to increased cloudiness and rainfall expected in KwaZulu Natal.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"64-72"},"PeriodicalIF":2.1,"publicationDate":"2025-03-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012427/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144024014","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-03-13eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.006
J Šantrůček, J Kubásek, J Janová, H ŠantrůčKOvá, J Altman, J Tumajer, M Hrádková, E Cienciala
{"title":"Response of leaf internal CO<sub>2</sub> concentration and intrinsic water-use efficiency in Norway spruce to century-long gradual CO<sub>2</sub> elevation.","authors":"J Šantrůček, J Kubásek, J Janová, H ŠantrůčKOvá, J Altman, J Tumajer, M Hrádková, E Cienciala","doi":"10.32615/ps.2025.006","DOIUrl":"https://doi.org/10.32615/ps.2025.006","url":null,"abstract":"<p><p>The strategies of Norway spruce [<i>Picea abies</i> (L.) Karst.] to increasing atmospheric CO<sub>2</sub> concentration (<i>C</i> <sub>a</sub>) are not entirely clear. Here, we reconstructed centennial trajectories of leaf internal CO<sub>2</sub> concentration (<i>C</i> <sub>i</sub>) and intrinsic water-use efficiency (WUE<sub>i</sub>) from the amount of <sup>13</sup>C in tree-ring cellulose. We collected 57 cores across elevations, soil, and atmospheric conditions in central Europe. Generally, WUE<sub>i</sub> and <i>C</i> <sub>i</sub> increased over the last 100 years and the <i>C</i> <sub>i</sub>/<i>C</i> <sub>a</sub> ratio remained almost constant. However, two groups were distinguished. The first group showed a quasi-linear response to <i>C</i> <sub>a</sub> and the sensitivity of <i>C</i> <sub>i</sub> to <i>C</i> <sub>a</sub> (<i>s</i> = d<i>C</i> <sub>i</sub>/d<i>C</i> <sub>a</sub>) ranged from 0 to 1. Trees in the second group showed nonmonotonic responses with extremes during the peak of industrial air pollution in the 1980s and <i>s</i> increase from -1 to +1.6. Our study shows a marked attenuation of the rise in WUE<sub>i</sub> during the 20<sup>th</sup> century leading to invariant WUE<sub>i</sub> in recent decades.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"51-63"},"PeriodicalIF":2.1,"publicationDate":"2025-03-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012425/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144064539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-02-27eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.004
K Winter, M Garcia, A Virgo
{"title":"Heat-induced F<sub>0</sub>-fluorescence rise is not an indicator of severe tissue necrosis in thermotolerance assays of young and mature leaves of a tropical tree species, <i>Calophyllum inophyllum</i>.","authors":"K Winter, M Garcia, A Virgo","doi":"10.32615/ps.2025.004","DOIUrl":"https://doi.org/10.32615/ps.2025.004","url":null,"abstract":"<p><p>In heating experiments with leaves, the temperature at which dark-level F<sub>0</sub> chlorophyll <i>a</i> fluorescence begins to rise, T<sub>crit</sub>, is widely used as an indicator of photosystem II thermotolerance. However, little is known about how T<sub>crit</sub> correlates with irreversible leaf tissue damage. Young and mature leaves of the tropical tree species <i>Calophyllum</i> <i>inophyllum</i> were heated stepwise from 30 to 55°C, at 1°C min<sup>-1</sup>. T<sub>crit</sub> was 47°C in young leaves and 49°C in mature leaves. Contrary to the higher T<sub>crit</sub> in mature leaves, heating to 55°C elicited greater tissue damage in mature than in young leaves. Young and mature leaves heated to their respective T<sub>crit</sub> or T<sub>crit</sub> + 2°C exhibited no or little tissue necrosis after 14 d of post-culture. It is concluded that measurements of the temperature-dependent F<sub>0</sub> fluorescence rise underestimate the thermal thresholds above which significant irreversible leaf damage occurs.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"46-50"},"PeriodicalIF":2.1,"publicationDate":"2025-02-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012419/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144064538","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-02-13eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.003
S Tanios, T Thangavel, A Eyles, R S Tegg, C R Wilson
{"title":"Relative importance of chlorophyll metabolic genes for light-induced greening of potato tubers.","authors":"S Tanios, T Thangavel, A Eyles, R S Tegg, C R Wilson","doi":"10.32615/ps.2025.003","DOIUrl":"https://doi.org/10.32615/ps.2025.003","url":null,"abstract":"<p><p>Potato tuber greening occurs due to the chlorophyll accumulation upon exposure to light, however, fundamental information on tuber chlorophyll metabolism is lacking. We measured the effect of varying light exposure (0, 48, 96, and 168 h) on chlorophyll concentration and gene expression of enzymes in the chlorophyll metabolic pathway in the potato varieties that differ in greening propensity. Greening was associated with the upregulation of genes involved in chlorophyll biosynthesis, particularly glutamyl-tRNA reductase 1, magnesium-chelatase subunit H, and magnesium-protoporphyrin IX monomethyl ester cyclase, and downregulation of genes involved in chlorophyll cycling and degradation, including chlorophyllide <i>a</i> oxygenase, and pheophorbide <i>a</i> oxygenase. Our findings suggest that relative resistance to tuber greening propensity may be due to a weaker upregulation of chlorophyll biosynthesis genes and weaker downregulation of chlorophyll degradation genes that occurs in susceptible varieties. The association of these biosynthesis and degradation genes with greening susceptibility may provide possible breeding targets for the future development of more greening-resistant varieties.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"37-45"},"PeriodicalIF":2.1,"publicationDate":"2025-02-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012421/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144038067","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-02-10eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.007
U Schreiber, H K Lichtenthaler
{"title":"Hans Kautsky's groundbreaking discovery(ies) in 1931, its scientific environment, and the ensuing developments.","authors":"U Schreiber, H K Lichtenthaler","doi":"10.32615/ps.2025.007","DOIUrl":"https://doi.org/10.32615/ps.2025.007","url":null,"abstract":"<p><p>In 1931, Hans Kautsky discovered not only chlorophyll (Chl) fluorescence induction (\"Kautsky effect\") in green leaves but also metastable excited oxygen, now known as singlet oxygen, which he showed to act as an intermediate in dye-sensitized photooxidations of organic substances <i>in vitro</i> (\"Kautsky mechanism\"). While at that time practically nothing was known about the primary reactions of photosynthesis, Kautsky firmly believed that \"his\" mechanism is also effective in the \"Chl-sensitized\" conversion of light energy into chemically fixed energy. This erroneous assumption complicated the interpretation of rapid Chl fluorescence induction kinetics, particularly those measured by his student Ulrich Franck in his 1941 dissertation, part of which indicated the existence of two excitonically separated light reactions. This historical note deals with the essence of Kautsky's two discoveries, the scientific environment under which they took place, and the question of why mainstream photosynthesis researchers have largely ignored the ensuing detailed experimental work of Ulrich Franck. The first commented English version of Kautsky and Hirsch (1931) is presented in the Appendix.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"28-36"},"PeriodicalIF":2.1,"publicationDate":"2025-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012422/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144028525","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-01-31eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.001
J J S Van Rensen
{"title":"The story of my life into and through the science of photosynthesis: a personal perspective.","authors":"J J S Van Rensen","doi":"10.32615/ps.2025.001","DOIUrl":"https://doi.org/10.32615/ps.2025.001","url":null,"abstract":"<p><p>I present here the story of my personal and scientific life. I provide information on my parents, my childhood, schooling, education at the Wageningen Agricultural University, and the work for my PhD degree on the action of some herbicides on photosynthesis under the guidance of Professor Evert Christiaan Wassink. After graduation, I obtained a position as a professor. In 1977, I spent a one-year sabbatical with Professor Govindjee at the University of Illinois at Urbana-Champaign, USA. This was the start of a long-time and successful cooperation on the effects of bicarbonate on Photosystem II. The research on the impact of herbicides on photosynthesis was extended in cooperation with Professor Ko Wakabayashi and his co-workers at the Tamagawa University at Machida-shi, Tokyo, Japan. Another topic of my research was the photoinhibition of PSII by too much light; for this, I worked with Professor Christa Critchley at the University of Queensland in Brisbane, Australia. At the end, I list my service in several professional committees.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"20-27"},"PeriodicalIF":2.1,"publicationDate":"2025-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012426/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144012568","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-01-30eCollection Date: 2025-01-01DOI: 10.32615/ps.2025.002
T Ogawa
{"title":"Sixty years of research on photosynthesis: a personal scientific autobiography.","authors":"T Ogawa","doi":"10.32615/ps.2025.002","DOIUrl":"https://doi.org/10.32615/ps.2025.002","url":null,"abstract":"<p><p>The following scientific autobiography is presented here as a homage to Professor Kazuo Shibata, who is the one who led me to do research in photosynthesis. He had invited me to Riken (The Institute of Physical and Chemical Research), and had launched the Japan-US Collaboration Project on \"<i>The Solar Energy Conversion by Means of Photosynthesis</i>\" and had invited many international scientists to Riken. My research, under Shibata, started on using a sensitive method for the determination of chlorophyll <i>b</i>, and of SDS-PAGE for the pigment protein complexes of the two photosystems. After Shibata had passed away at the age of 66, I found post-illumination CO<sub>2</sub> burst from cyanobacterial cell suspensions. This finding led me to study the CO<sub>2</sub>-concentrating mechanism (CCM) and the function and structure of NADP(H) dehydrogenase complexes (NDH-I) in cyanobacteria, which were developed after I had moved to Nagoya University, and in several other laboratories in the world after I had retired from Nagoya University.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"10-19"},"PeriodicalIF":2.1,"publicationDate":"2025-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012424/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144063590","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2025-01-17eCollection Date: 2025-01-01DOI: 10.32615/ps.2024.043
V Kreslavski, P Pashkovskiy, A Ashikhmin, A Kosobryukhov, A Shmarev, A Ivanov, V Strokina, M Vereshchagin, G Shirshikova, S I Allakhverdiev
{"title":"The resistance of <i>Solanum lycopersicum</i> photosynthetic apparatus to high-intensity blue light is determined mainly by the cryptochrome 1 content.","authors":"V Kreslavski, P Pashkovskiy, A Ashikhmin, A Kosobryukhov, A Shmarev, A Ivanov, V Strokina, M Vereshchagin, G Shirshikova, S I Allakhverdiev","doi":"10.32615/ps.2024.043","DOIUrl":"https://doi.org/10.32615/ps.2024.043","url":null,"abstract":"<p><p>The effects of deficiency of cryptochrome 1 (CRY1), phytochrome B2 (phyB2) and the photoreceptor signalling DET-1 protein (<i>hp-2</i> mutant) on photosynthesis and pro-/antioxidant balance in <i>Solanum lycopersicum</i> exposed to high-intensity blue light [HIBL, 72 h, 500/1,000 μmol(photon) m<sup>-2</sup> s<sup>-1</sup>] were studied. Noticeable photoinhibition of photosynthesis and PSII was found in all these variants. However, the greatest decrease in photosynthesis and PSII activity was observed in the <i>cry1</i> mutant. The difference among the other options was less pronounced. This low resistance of the <i>cry1</i> mutant to HIBL is associated with reduced photosynthetic pigments, phenols, and anthocyanins. It appears that under HIBL, CRY1 and, to a lesser extent, phyB2 are required to maintain photosynthesis and antioxidant defence, mitigating blue light-induced oxidative stress. This study expands our understanding of the defence functions of CRY1 and highlights its importance in adapting the photosynthetic apparatus to HIBL.</p>","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"63 1","pages":"1-9"},"PeriodicalIF":2.1,"publicationDate":"2025-01-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12012423/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143978564","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
PhotosyntheticaPub Date : 2024-12-18eCollection Date: 2024-01-01DOI: 10.32615/ps.2024.042
G Govindjee, L O Björn, R E Blankenship
{"title":"On \"P750s\" in cyanobacteria: A historical perspective.","authors":"G Govindjee, L O Björn, R E Blankenship","doi":"10.32615/ps.2024.042","DOIUrl":"10.32615/ps.2024.042","url":null,"abstract":"","PeriodicalId":20157,"journal":{"name":"Photosynthetica","volume":"62 4","pages":"406-408"},"PeriodicalIF":2.1,"publicationDate":"2024-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11726166/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142984343","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}