{"title":"Leveraging the Synergy between Mechanistic Insight and Machine Learning for Predictive Structure–Performance Relationships in Organic Synthesis","authors":"Yi-Zhou Sun, Shuo-Qing Zhang, Xin Hong","doi":"10.1021/acs.accounts.6c00547","DOIUrl":"10.1021/acs.accounts.6c00547","url":null,"abstract":"<p>Understanding how molecularstructure determines reaction performanceis a central objective of physical organic chemistry and an increasinglyimportant challenge in data-driven organic synthesis. As the frontiersof synthetic chemistry continue to advance, predictive structure–performancerelationship modeling is expected not only to reproduce known reactionoutcomes but also to guide new chemical design. In this Account, wesummarize our efforts to integrate mechanistic insight with machinelearning across data construction, model development, and discoveryapplications. At the data level, mechanistic understanding can helpdefine reaction spaces and learning targets, allowing automated densityfunctional theory calculations and literature-derived databases tobecome chemically consistent learning resources. This idea is illustratedby computed selectivity data sets for radical C–H functionalizationand Cu(II)-mediated radical bond formation as well as literature databasesfor asymmetric hydrogenation of olefins and N,N′-dioxide/metal-catalyzedMichael additions. At the modeling level, mechanistic knowledge canbe embedded into reaction representations and model architectures.Transition-state-based reaction encoding introduces pathway-specificstereochemical information into enantioselectivity prediction, whilesteric- and electronics-embedded molecular graphs incorporate physicalorganic effects directly into molecular deep learning. At the discoverylevel, mechanistic relatedness provides a basis for selecting historicaldata and transferring structure–performance relationships intolow-data chemical space. This mechanism-guided transfer learning formalizeshow chemists reuse related precedents, enabling few-shot catalystligand discovery for Ni-catalyzed atroposelective Suzuki–Miyauracoupling. A central lesson from these studies is that mechanisticinsight is not a replacement for machine learning but the chemicalfoundation that makes it more reliable, interpretable, and extrapolative.By translating mechanistic understanding into data boundaries, reactionrepresentations, and transfer strategies, machine learning can movebeyond retrospective fitting and become a chemically grounded frameworkfor predicting and discovering new organic reactions.</p>","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":"59 20","pages":"3400–3412"},"PeriodicalIF":18.0,"publicationDate":"2026-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149150814","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Radical Hydrofunctionalization Using Light Driven, Reductive Cobalt Hydride Catalysis","authors":"Hanqi Zhou, He Chen, Christopher J. Teskey","doi":"10.1021/acs.accounts.6c00516","DOIUrl":"https://doi.org/10.1021/acs.accounts.6c00516","url":null,"abstract":"<p>First row transition metalssuch as iron, cobalt and manganesewith weak-field ligands are able to form metal hydride species insitu which have a weak M–H bond. In these cases, the formaladdition of a hydrogen atom to an olefin is thermodynamically favored.The high regio and chemoselectivity of this process, termed metalhydride hydrogen-atom-transfer (MHAT) catalysis, together with thebroad availability of olefins and the divergent reaction pathwaysfrom the carbon centered radical that is formed, has resulted in awide range of radical hydrofunctionalization strategies that havebeen used extensively in complex synthetic settings.</p><p>Until around5 years ago, a typical catalytic cycle for formingthe metal hydride relied on oxidation as a first step, followed byreaction with a hydride equivalent. The requirement to find compatibleoxidant/reductant pairs defined and limited the scope of this chemistry.However, several groups including our own recognized that it wouldinstead be possible to first <em>reduce</em> the metal andthen protonate the low-valent form to yield the same metal hydridespecies. This net reductive approach would unlock new avenues foronward reactivity, circumventing the compatibility issues associatedwith the reagents used previously.</p><p>A number of different approachesto this reductive MHAT paradigmhave been reported, using chemical reductants, electrochemistry orphotochemistry. Our group has focused on the merger of cobalt catalysisand photocatalysis to enable new hydrofunctionalization reactivity.Under reductive reaction conditions, it is possible to simultaneouslyform a persistent radical via single electron reduction and couplethis with the radical formed from the alkene. We have used this conceptto couple alkenes with cyanoarenes, pyridyl phosphonium salts, ketonesand imines.</p><p>Radical rearrangements, initiated by MHAT, can takeplace thatwere previously inefficient or not possible under oxidative MHAT conditions.We have used this to promote aryl migration reactions, building newC–C bonds with sterically demanding aromatic groups. And mostrecently, we have reported the combination of MHAT catalysis withreductive radical polar crossover, a new type of reactivity that enablesthe use of an electrophile as a coupling partner, contrasting withthe commonly reported oxidative radical polar crossover pathway wherehydrofunctionalization takes place with nucleophiles.</p><p>In summary,the reductive MHAT concept has reinvigorated interestin radical hydrofunctionalization reactions. Here, we present ourjourney in uncovering new reactivities accessible only through thiscatalytic paradigm, enabled by photochemistry. We are confident thatboth the synthetic utility and the broader appeal of this modern approachto classical MHAT reactivity will continue to increase in the comingyears, driven by the growing demand for catalytic systems that employearth-abundant transition metals and which enable direct functionalizationof native olefin","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":"59 20","pages":"3375–3386"},"PeriodicalIF":18.0,"publicationDate":"2026-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149218989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Michał Terlecki, Iwona Justyniak, Krzysztof Budny-Godlewski, Janusz Lewiński
{"title":"Dynamic Speciation as a Hidden Driver of Reactivity: Lessons from Organozinc Chemistry","authors":"Michał Terlecki, Iwona Justyniak, Krzysztof Budny-Godlewski, Janusz Lewiński","doi":"10.1021/acs.accounts.6c00598","DOIUrl":"https://doi.org/10.1021/acs.accounts.6c00598","url":null,"abstract":"<p>Organometallic reactivity is traditionally rationalizedin termsof well-defined molecular structures. In this Account, we argue thatfor organozinc compounds, this picture is incomplete: their reactivityis governed not by isolated molecules but by dynamic speciation landscapes─equilibratingLewis acid–base adducts, interconverting aggregates, speciesgenerated by Schlenk redistribution, transient intermediates, andphase-confined assemblies whose composition evolves throughout a reaction.Drawing on more than two decades of our group’s work, we showthat reaction outcomes emerge from the identity and evolution of thesereactive ensembles rather than from any single species that can becrystallized and assigned a formula. Moving from static structuresto reactive landscapes, we first consider molecular complexes as programmablereactive platforms, in which aggregation and donor coordination generatefamilies of interconverting species that can be deliberately tuned.We then recast Schlenk equilibria, long regarded as a passive redistributionnuisance, as an active determinant of reactivity: by continuouslyreshaping the pool of available reagents, they define which speciesare present when the reaction occurs and thereby redirect its course.</p><p>Asymmetric catalysis puts the ensemble picture to its sharpesttest. For example, chiral amplification in the dialkylzinc additionto aldehydes is classically explained by an equilibrium between catalyticallyactive and dormant aggregates, a two-level picture of the reactiveensemble. Our work on bifunctional alcohols indicates that this ensembleis richer: we isolated an unprecedented tetranuclear zinc aggregate,pointing to higher-nuclearity species as possible sources of the catalyticallycompetent centers. The unexpected incorporation of the solvent intoone such species further showed that even the reaction medium participatesin shaping the ensemble. Conversely, where the ensemble proved simpleenough to define─as in the epoxidation of enones by zinc alkylperoxides─itbecame a design tool: systematic ligand modification delivered enantioselectivitiesreaching 91% <em>ee</em>. Speciation control overturns aneven longer-standing assumption. The reaction of organozinc compoundswith O<sub>2</sub>, long treated as an uncontrolled radical process,emerges instead as a sequence of elementary steps governed by latentLewis acidity, inner-sphere electron transfer (ISET), and productinhibition─steps that allow reactive intermediates to be intercepted,giving controlled access to alkylzinc alkylperoxides and related oxygenatedspecies.</p><p>Beyond homogeneous solution, we show how phase-dependentspeciationmodulates reactivity in the solid state: mechanochemical and phase-confinedenvironments, together with supramolecular self-assembly, stabilizeensembles and open pathways─and give access to functional materials─inaccessiblein solution, establishing a continuum linking molecular speciationto materials formation.</p><p>Across these system","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":"59 20","pages":"3545–3559"},"PeriodicalIF":18.0,"publicationDate":"2026-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149218996","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Christian Santiago Strong,Peng-Jui Chen,Alexander Q. Cusumano,William A. Goddard,Brian M. Stoltz
{"title":"Enantioselective\u0000Reactions of Palladium Enolate Intermediates:\u0000Beyond Allylic Alkylation","authors":"Christian Santiago Strong,Peng-Jui Chen,Alexander Q. Cusumano,William A. Goddard,Brian M. Stoltz","doi":"10.1021/acs.accounts.6c00544","DOIUrl":"https://doi.org/10.1021/acs.accounts.6c00544","url":null,"abstract":"Conspectus The enantioselective Pd-catalyzed allylic alkylation reaction has proven to be an incredibly powerful and versatile methodology for the construction of stereoenriched building blocks bearing all-carbon quaternary centers. We have contributed to this field by investigating the application of chiral phosphinooxazoline (PHOX) palladium catalysts in the context of asymmetric alkylations of unstabilized nucleophiles toward a diverse array of products. In the course of our computational and mechanistic investigations, we have uncovered an oxygen-bound Pd enolate intermediate that is proposed to undergo an inner-sphere pericyclic reductive elimination. This mechanistic hypothesis stands in contrast to the outer-sphere and charge-separated mechanisms proposed for many other Pd-catalyzed allylic alkylation reactions. Intercepting this chiral enolate with other electrophiles beyond an allyl group would allow more diverse chemical space to be accessible using this platform. This Account describes several distinct approaches toward this end that are enabled by joint computational and experimental mechanistic studies. To begin, we discuss our early efforts to intercept Pd enolates using exogeneous electrophiles such as acidic protons and benzylidene malononitriles. Through these approaches, we discovered that strongly activated and polarized external electrophiles were the most successful substrates in the context of selective asymmetric transformations. We have expanded this scope to weaker carbon electrophiles by intramolecularly tethering these groups to our Pd enolate precursors alongside the application of exogeneous allyl scavengers. These strategies allow the formation of products that do not bear an allyl substituent. This development enabled construction of a library of chiral spirocycles, motifs that are prevalent in bioactive molecules. In order to extend the range of electrophiles compatible with this chemistry, we have identified the use of terminally substituted allyl groups to be important for the formation of stereotriads and -tetrads. Exploring these reactions experimentally and computationally has suggested new possible turnover mechanisms and stereochemical considerations that have informed further design iterations.","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":"89 1","pages":""},"PeriodicalIF":18.3,"publicationDate":"2026-10-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"149210402","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}