Journal of Integrative Plant Biology最新文献

筛选
英文 中文
Recognition of a salivary effector by the TNL protein RCSP promotes effector-triggered immunity and systemic resistance in Nicotiana benthamiana TNL 蛋白 RCSP 识别唾液效应物,促进效应物触发的免疫和烟草根的系统抗性。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-30 DOI: 10.1111/jipb.13800
Weiwei Rao, Tingting Ma, Jiayuan Cao, Yajun Zhang, Sisi Chen, Shu Lin, Xiaoxiao Liu, Guangcun He, Li Wan
{"title":"Recognition of a salivary effector by the TNL protein RCSP promotes effector-triggered immunity and systemic resistance in Nicotiana benthamiana","authors":"Weiwei Rao,&nbsp;Tingting Ma,&nbsp;Jiayuan Cao,&nbsp;Yajun Zhang,&nbsp;Sisi Chen,&nbsp;Shu Lin,&nbsp;Xiaoxiao Liu,&nbsp;Guangcun He,&nbsp;Li Wan","doi":"10.1111/jipb.13800","DOIUrl":"10.1111/jipb.13800","url":null,"abstract":"<div>\u0000 \u0000 <p>Insects secret chemosensory proteins (CSPs) into plant cells as potential effector proteins during feeding. The molecular mechanisms underlying how CSPs activate plant immunity remain largely unknown. We show that CSPs from six distinct insect orders induce dwarfism when overexpressed in <i>Nicotiana benthamiana</i>. Agrobacterium-mediated transient expression of <i>Nilaparvata lugens</i> CSP11 (NlCSP11) triggered cell death and plant dwarfism, both of which were dependent on ENHANCED DISEASE SUSCEPTIBILITY 1 (EDS1), N requirement gene 1 (NRG1) and SENESCENCE-ASSOCIATED GENE 101 (SAG101), indicating the activation of effector-triggered immunity (ETI) in <i>N. benthamiana</i>. Overexpression of NlCSP11 led to stronger systemic resistance against <i>Pseudomonas syringae</i> DC3000 lacking effector HopQ1-1 and tobacco mosaic virus, and induced higher accumulation of salicylic acid (SA) in uninfiltrated leaves compared to another effector XopQ that is recognized by a Toll-interleukin-1 receptor (TIR) domain nucleotide-binding leucine-rich repeat receptor (TNL) called ROQ1 in <i>N. benthamiana</i>. Consistently, NlCSP11-induced dwarfism and systemic resistance, but not cell death, were abolished in <i>N. benthamiana</i> transgenic line expressing the SA-degrading enzyme <i>NahG</i>. Through large-scale virus-induced gene silencing screening, we identified a TNL protein that mediates the recognition of CSPs (RCSP), including aphid effector MP10 that triggers resistance against aphids in <i>N. benthamiana</i>. Co-immunoprecipitation, bimolecular fluorescence complementation and AlphaFold2 prediction unveiled an interaction between NlCSP11 and RCSP. Interestingly, RCSP does not contain the conserved catalytic glutamic acid in the TIR domain, which is required for TNL function. Our findings point to enhanced ETI and systemic resistance by a TNL protein via hyperactivation of the SA pathway. Moreover, RCSP is the first TNL identified to recognize an insect effector.</p></div>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 1","pages":"150-168"},"PeriodicalIF":9.3,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.13800","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142542391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The MON1–CCZ1 complex plays dual roles in autophagic degradation and vacuolar protein transport in rice MON1-CCZ1复合体在水稻自噬降解和液泡蛋白运输中发挥双重作用。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-30 DOI: 10.1111/jipb.13792
Binglei Zhang, Yihua Wang, Yun Zhu, Tian Pan, Haigang Yan, Xin Wang, Ruonan Jing, Hongming Wu, Fan Wang, Yu Zhang, Xiuhao Bao, Yongfei Wang, Pengcheng Zhang, Yu Chen, Erchao Duan, Xiaohang Han, Gexing Wan, Mengyuan Yan, Xiejun Sun, Cailin Lei, Zhijun Cheng, Zhichao Zhao, Ling Jiang, Yiqun Bao, Yulong Ren, Jianmin Wan
{"title":"The MON1–CCZ1 complex plays dual roles in autophagic degradation and vacuolar protein transport in rice","authors":"Binglei Zhang,&nbsp;Yihua Wang,&nbsp;Yun Zhu,&nbsp;Tian Pan,&nbsp;Haigang Yan,&nbsp;Xin Wang,&nbsp;Ruonan Jing,&nbsp;Hongming Wu,&nbsp;Fan Wang,&nbsp;Yu Zhang,&nbsp;Xiuhao Bao,&nbsp;Yongfei Wang,&nbsp;Pengcheng Zhang,&nbsp;Yu Chen,&nbsp;Erchao Duan,&nbsp;Xiaohang Han,&nbsp;Gexing Wan,&nbsp;Mengyuan Yan,&nbsp;Xiejun Sun,&nbsp;Cailin Lei,&nbsp;Zhijun Cheng,&nbsp;Zhichao Zhao,&nbsp;Ling Jiang,&nbsp;Yiqun Bao,&nbsp;Yulong Ren,&nbsp;Jianmin Wan","doi":"10.1111/jipb.13792","DOIUrl":"10.1111/jipb.13792","url":null,"abstract":"<p>Autophagy is a highly conserved cellular program in eukaryotic cells which mediates the degradation of cytoplasmic components through the lysosome, also named the vacuole in plants. However, the molecular mechanisms underlying the fusion of autophagosomes with the vacuole remain unclear. Here, we report the functional characterization of a rice (<i>Oryza sativa</i>) mutant with defects in storage protein transport in endosperm cells and accumulation of numerous autophagosomes in root cells. Cytological and immunocytochemical experiments showed that this mutant exhibits a defect in the fusion between autophagosomes and vacuoles. The mutant harbors a loss-of-function mutation in the rice homolog of <i>Arabidopsis thaliana MONENSIN SENSITIVITY1</i> (<i>MON1</i>). Biochemical and genetic evidence revealed a synergistic interaction between rice <i>MON1</i> and <i>AUTOPHAGY-RELATED 8a</i> in maintaining normal growth and development. In addition, the rice <i>mon1</i> mutant disrupted storage protein sorting to protein storage vacuoles. Furthermore, quantitative proteomics verified that the loss of MON1 function influenced diverse biological pathways including autophagy and vacuolar transport, thus decreasing the transport of autophagic and vacuolar cargoes to vacuoles. Together, our findings establish a molecular link between autophagy and vacuolar protein transport, and offer insights into the dual functions of the MON1–CCZ1 (CAFFEINE ZINC SENSITIVITY1) complex in plants.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 1","pages":"35-54"},"PeriodicalIF":9.3,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11734111/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142542392","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The OsMAPK5–OsWRKY72 module negatively regulates grain length and grain weight in rice OsMAPK5-OsWRKY72 模块负向调节水稻的粒长和粒重。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-30 DOI: 10.1111/jipb.13786
Fuxiang Wang, Jiexin Lin, Fan Yang, Xiaofeng Chen, Yiyi Liu, Lingnan Yan, Jing Chen, Zonghua Wang, Huaan Xie, Jianfu Zhang, Huibin Xu, Songbiao Chen
{"title":"The OsMAPK5–OsWRKY72 module negatively regulates grain length and grain weight in rice","authors":"Fuxiang Wang,&nbsp;Jiexin Lin,&nbsp;Fan Yang,&nbsp;Xiaofeng Chen,&nbsp;Yiyi Liu,&nbsp;Lingnan Yan,&nbsp;Jing Chen,&nbsp;Zonghua Wang,&nbsp;Huaan Xie,&nbsp;Jianfu Zhang,&nbsp;Huibin Xu,&nbsp;Songbiao Chen","doi":"10.1111/jipb.13786","DOIUrl":"10.1111/jipb.13786","url":null,"abstract":"<p>Grain size and grain weight are important determinants for grain yield. In this study, we identify a novel OsMAPK5–OsWRKY72 module that negatively regulates grain length and grain weight in rice. We found that loss-of-function of <i>OsMAPK5</i> leads to larger cell size of the rice spikelet hulls and a significant increase in both grain length and grain weight in an <i>indica</i> variety Minghui 86 (MH86). OsMAPK5 interacts with OsMAPKK3/4/5 and OsWRKY72 and phosphorylates OsWRKY72 at T86 and S88. Similar to the <i>osmapk5</i> MH86 mutants, the <i>oswrky72</i> knockout MH86 mutants exhibited larger size of spikelet hull cells and increased grain length and grain weight, whereas the <i>OsWRKY72</i>-overexpression MH86 plants showed opposite phenotypes. OsWRKY72 targets the W-box motifs in the promoter of <i>OsARF6</i>, an auxin response factor involved in auxin signaling. Dual-luciferase reporter assays demonstrated that OsWRKY72 activates <i>OsARF6</i> expression. The activation effect of the phosphorylation-mimicking OsWRKY72<sup>T86D/S88D</sup> on <i>OsARF6</i> expression was significantly enhanced, whereas the effects of the OsWRKY72 phosphorylation-null mutants were significantly reduced. In addition, auxin levels in young panicles of the <i>osmapk5</i> and <i>oswrky72</i> mutants were significantly higher than that in the wild-type MH86. Collectively, our study uncovered novel connections of the OsMAPKK3/4/5-OsMAPK5-mediated MAPK signaling, OsWRKY72-mediated transcription regulation, and OsARF6-mediated auxin signaling pathways in regulating grain length and grain weight in an <i>indica</i>-type rice, providing promising targets for molecular breeding of rice varieties with high yield and quality.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"66 12","pages":"2648-2663"},"PeriodicalIF":9.3,"publicationDate":"2024-10-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11622537/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142542393","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
More than flowering: CONSTANS plays multifaceted roles in plant development and stress responses. 不仅仅是开花CONSTANS 在植物发育和应激反应中发挥着多方面的作用。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-28 DOI: 10.1111/jipb.13798
Bin Yu, Yilong Hu, Xingliang Hou
{"title":"More than flowering: CONSTANS plays multifaceted roles in plant development and stress responses.","authors":"Bin Yu, Yilong Hu, Xingliang Hou","doi":"10.1111/jipb.13798","DOIUrl":"https://doi.org/10.1111/jipb.13798","url":null,"abstract":"<p><p>Plants have evolved a remarkable ability to sense and respond to changes in photoperiod, allowing adjustments to their growth and development based on seasonal and environmental cues. The floral transition is a pivotal stage in plant growth and development, signifying a shift from vegetative to reproductive growth. CONSTANS (CO), a central photoperiodic response factor conserved in various plants, mediates day-length signals to control the floral transition, although its mechanisms of action vary among plants with different day-length requirements. In addition, recent studies have uncovered roles for CO in organ development and stress responses. These pleiotropic roles in model plants and crops make CO a potentially fruitful target for molecular breeding aimed at modifying crop agronomic traits. This review systematically traces research on CO, from its discovery and functional studies to the exploration of its regulatory mechanisms and newly discovered functions, providing important insight into the roles of CO and laying a foundation for future research.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":" ","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142491687","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Big data and artificial intelligence-aided crop breeding: Progress and prospects. 大数据和人工智能辅助作物育种:进展与前景。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-28 DOI: 10.1111/jipb.13791
Wanchao Zhu, Weifu Li, Hongwei Zhang, Lin Li
{"title":"Big data and artificial intelligence-aided crop breeding: Progress and prospects.","authors":"Wanchao Zhu, Weifu Li, Hongwei Zhang, Lin Li","doi":"10.1111/jipb.13791","DOIUrl":"https://doi.org/10.1111/jipb.13791","url":null,"abstract":"<p><p>The past decade has witnessed rapid developments in gene discovery, biological big data (BBD), artificial intelligence (AI)-aided technologies, and molecular breeding. These advancements are expected to accelerate crop breeding under the pressure of increasing demands for food. Here, we first summarize current breeding methods and discuss the need for new ways to support breeding efforts. Then, we review how to combine BBD and AI technologies for genetic dissection, exploring functional genes, predicting regulatory elements and functional domains, and phenotypic prediction. Finally, we propose the concept of intelligent precision design breeding (IPDB) driven by AI technology and offer ideas about how to implement IPDB. We hope that IPDB will enhance the predictability, efficiency, and cost of crop breeding compared with current technologies. As an example of IPDB, we explore the possibilities offered by CropGPT, which combines biological techniques, bioinformatics, and breeding art from breeders, and presents an open, shareable, and cooperative breeding system. IPDB provides integrated services and communication platforms for biologists, bioinformatics experts, germplasm resource specialists, breeders, dealers, and farmers, and should be well suited for future breeding.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":" ","pages":""},"PeriodicalIF":9.3,"publicationDate":"2024-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142520546","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Haplotype-resolved genome of a heterozygous wild peach reveals the PdaWRKY4-PdaCYP716A1 module mediates resistance to aphids by regulating betulin biosynthesis 杂合野生桃的单倍型基因组显示,PdaWRKY4-PdaCYP716A1模块通过调节甜菜素的生物合成来介导对蚜虫的抗性。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-25 DOI: 10.1111/jipb.13782
Jun-Xiu Wang, Yong Li, Xin-Wei Wang, Ke Cao, Chang-Wen Chen, Jin-Long Wu, Wei-Chao Fang, Geng-Rui Zhu, Xue-Jia Chen, Dan-Dan Guo, Jiao Wang, Ya-Lin Zhao, Jia-Qi Fan, Su-Ning Liu, Wen-Qing Li, Hang-Ling Bie, Qiang Xu, Li-Rong Wang
{"title":"Haplotype-resolved genome of a heterozygous wild peach reveals the PdaWRKY4-PdaCYP716A1 module mediates resistance to aphids by regulating betulin biosynthesis","authors":"Jun-Xiu Wang,&nbsp;Yong Li,&nbsp;Xin-Wei Wang,&nbsp;Ke Cao,&nbsp;Chang-Wen Chen,&nbsp;Jin-Long Wu,&nbsp;Wei-Chao Fang,&nbsp;Geng-Rui Zhu,&nbsp;Xue-Jia Chen,&nbsp;Dan-Dan Guo,&nbsp;Jiao Wang,&nbsp;Ya-Lin Zhao,&nbsp;Jia-Qi Fan,&nbsp;Su-Ning Liu,&nbsp;Wen-Qing Li,&nbsp;Hang-Ling Bie,&nbsp;Qiang Xu,&nbsp;Li-Rong Wang","doi":"10.1111/jipb.13782","DOIUrl":"10.1111/jipb.13782","url":null,"abstract":"<div>\u0000 \u0000 <p>Wild species of domesticated crops provide valuable genetic resources for resistance breeding. <i>Prunus davidiana</i>, a wild relative of peach with high heterozygosity and diverse stress tolerance, exhibits high resistance against aphids. However, the highly heterozygous genome of <i>P. davidiana</i> makes determining the underlying factors influencing resistance traits challenging. Here, we present the 501.7 Mb haplotype-resolved genome assembly of <i>P. davidiana</i>. Genomic comparisons of the two haplotypes revealed 18,152 structural variations, 2,699 Pda_hap1-specific and 2,702 Pda_hap2-specific genes, and 1,118 allele-specific expressed genes. Genome composition indicated 4.1% of the <i>P. davidiana</i> genome was non-peach origin, out of which 94.5% was derived from almond. Based on the haplotype genome, the aphid resistance quantitative trait locus (QTL) was mapped at the end of Pda03. From the aphid resistance QTL, <i>PdaWRKY4</i> was identified as the major dominant gene, with a 9-bp deletion in its promoter of the resistant phenotype. Specifically, <i>PdaWRKY4</i> regulates aphid resistance by promoting <i>PdaCYP716A1</i>-mediated anti-aphid metabolite betulin biosynthesis. Moreover, we employed a genome design to develop a breeding workflow for rapidly and precisely producing aphid-resistant peaches. In conclusion, this study identifies a novel aphid resistance gene and provides insights into genome design for the development of resistant fruit cultivars.</p></div>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"66 12","pages":"2716-2735"},"PeriodicalIF":9.3,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.13782","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142491685","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The miR396a–SlGRF8 module regulates sugar accumulation in the roots via SlSTP10 during the interaction between root-knot nematodes and tomato plants 在根结线虫与番茄植株的相互作用过程中,miR396a-SlGRF8 模块通过 SlSTP10 调节根部的糖积累。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-25 DOI: 10.1111/jipb.13794
Lulu Sun, Mengting Zhu, Xiaoxuan Zhou, Ruiyue Gu, Yuying Hou, Tongtong Li, Huang Huang, Rui Yang, Shaohui Wang, Wenchao Zhao
{"title":"The miR396a–SlGRF8 module regulates sugar accumulation in the roots via SlSTP10 during the interaction between root-knot nematodes and tomato plants","authors":"Lulu Sun,&nbsp;Mengting Zhu,&nbsp;Xiaoxuan Zhou,&nbsp;Ruiyue Gu,&nbsp;Yuying Hou,&nbsp;Tongtong Li,&nbsp;Huang Huang,&nbsp;Rui Yang,&nbsp;Shaohui Wang,&nbsp;Wenchao Zhao","doi":"10.1111/jipb.13794","DOIUrl":"10.1111/jipb.13794","url":null,"abstract":"<div>\u0000 \u0000 <p>Root-knot nematodes (RKNs; <i>Meloidogyne</i> spp.) are a serious threat to crop production. The competition between plants and pathogens for assimilates influences the outcome of their interactions. However, the mechanisms by which plants and nematodes compete with each other for assimilates have not been elucidated. In this study, we demonstrated that miR396a plays a negative role in defense against RKNs and a positive role in sugar accumulation in tomato roots. The overexpression of <i>SlGRF8</i> (<i>Solanum lycopersicum growth-regulating factor 8</i>), the target of miR396a, decreased the sugar content of the roots and the susceptibility to RKNs, whereas the <i>grf8-cr</i> mutation had the opposite effects. Furthermore, we confirmed that SlGRF8 regulated the sugar content in roots by directly activating the transcription of <i>SlSTP10</i> (<i>Solanum lycopersicum sugar transporter protein 10</i>) in response to RKN stress. Moreover, <i>SlSTP10</i> was expressed primarily in the tissues surrounding giant cells, and the <i>SlSTP10</i> knockout increased both the sugar content in the roots and the plant's susceptibility to RKNs. Overall, this study provides important insight into the molecular mechanism through which the miR396a-SlGRF8-SlSTP10 module regulates sugar allocation in roots under RKN stress.</p></div>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"66 12","pages":"2701-2715"},"PeriodicalIF":9.3,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.13794","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142491705","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Efficient gene disruption in polyploid genome by Cas9–Trex2 fusion protein Cas9-Trex2融合蛋白在多倍体基因组中的高效基因干扰。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-25 DOI: 10.1111/jipb.13797
Wenbo Pan, Chunlei Gao, De Niu, Jinghua Cheng, Jiao Zhang, Xiying Yan, Qiang Long, YaoYao Zhu, Wenjing Sun, Qi Xie, Yuehui He, Xing Wang Deng, Huawei Zhang, Jian Li
{"title":"Efficient gene disruption in polyploid genome by Cas9–Trex2 fusion protein","authors":"Wenbo Pan,&nbsp;Chunlei Gao,&nbsp;De Niu,&nbsp;Jinghua Cheng,&nbsp;Jiao Zhang,&nbsp;Xiying Yan,&nbsp;Qiang Long,&nbsp;YaoYao Zhu,&nbsp;Wenjing Sun,&nbsp;Qi Xie,&nbsp;Yuehui He,&nbsp;Xing Wang Deng,&nbsp;Huawei Zhang,&nbsp;Jian Li","doi":"10.1111/jipb.13797","DOIUrl":"10.1111/jipb.13797","url":null,"abstract":"<p>The fusion of the exonuclease Trex2 with the Cas9 protein significantly enhanced the efficiency of genome editing in hexaploid common wheat, particularly for the simultaneous editing of multiple favorable alleles within a single generation, thereby facilitating genome editing-assisted breeding in polyploid crops.\u0000 <figure>\u0000 <div><picture>\u0000 <source></source></picture><p></p>\u0000 </div>\u0000 </figure></p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"67 1","pages":"7-10"},"PeriodicalIF":9.3,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.13797","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142491684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
How have breeders adapted rice flowering to the growing region? 育种人员是如何使水稻开花适应种植地区的?
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-25 DOI: 10.1111/jipb.13785
Asako Kobayashi, Mao Suganami, Hideki Yoshida, Yoichi Morinaka, Syuto Watanabe, Yoshie Machida, Genki Chaya, Fumihiro Nakaoka, Nobuhito Sato, Kotaro Miura, Makoto Matsuoka
{"title":"How have breeders adapted rice flowering to the growing region?","authors":"Asako Kobayashi,&nbsp;Mao Suganami,&nbsp;Hideki Yoshida,&nbsp;Yoichi Morinaka,&nbsp;Syuto Watanabe,&nbsp;Yoshie Machida,&nbsp;Genki Chaya,&nbsp;Fumihiro Nakaoka,&nbsp;Nobuhito Sato,&nbsp;Kotaro Miura,&nbsp;Makoto Matsuoka","doi":"10.1111/jipb.13785","DOIUrl":"10.1111/jipb.13785","url":null,"abstract":"<p>Flowering time is a crucial rice trait that influences its adaptation to various environments, cropping schedules, and agronomic characteristics. Rice breeders have exploited spontaneous mutations in heading date genes to regulate the flowering time. In the present study, we investigated how breeders in Fukui Prefecture regulated days to heading while developing promising rice varieties. Genome-wide association studies (GWAS) identified <i>Hd1, Hd16</i>, and <i>Hd18</i> as the major genes controlling days to heading in the population. However, we suspected that this highly bred population might exhibit genomic stratification, which could lead to spurious or false correlations in the GWAS. Thus, we also conducted correlation and partial correlation analyses, which uncovered another key heading date gene, <i>Hd17</i>, that GWAS failed to detect because of its linkage disequilibrium with the major effect gene <i>Hd16</i>. Examination of haplotype frequencies across different breeding periods revealed that the early-heading <i>Hd16</i> (<i>Hd16(E)</i>) and late-heading <i>Hd17</i> (<i>Hd17(L)</i>) were increasingly co-selected in the <i>Hd1</i> functional population. Varieties carrying this <i>Hd16(E)/Hd17(L)</i> combination exhibited days to heading in the range of 70–80, which corresponds to the peak temperature and sunshine period and is also optimal for grain quality and yield components in the Fukui environment. The present study highlights that it is imperative to remain vigilant for Type I (false positives) and Type II (false negatives) errors when performing GWAS on highly bred populations and to implement appropriate countermeasures by accounting for gene-by-gene interactions established through the breeding process. We also discuss the effectiveness of <i>Hd16(E)</i>, which is not used outside Japan for subtle days to heading control but is widely used in Japan at certain latitudes.</p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"66 12","pages":"2736-2753"},"PeriodicalIF":9.3,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11622534/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142491686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Two-faced OsNAS3 influences disease resistance via nicotianamine and ethylene 双面 OsNAS3 通过烟碱和乙烯影响抗病性。
IF 9.3 1区 生物学
Journal of Integrative Plant Biology Pub Date : 2024-10-23 DOI: 10.1111/jipb.13788
Kaiwei He, Liting Xu, Qin He, Wei Zhang, Ying Zhang, Xiaobo Zhu, Junjie Yin, Qing Xiong, Qingqing Hou, Yongyan Tang, Min He, Xuewei Chen, Weitao Li
{"title":"Two-faced OsNAS3 influences disease resistance via nicotianamine and ethylene","authors":"Kaiwei He,&nbsp;Liting Xu,&nbsp;Qin He,&nbsp;Wei Zhang,&nbsp;Ying Zhang,&nbsp;Xiaobo Zhu,&nbsp;Junjie Yin,&nbsp;Qing Xiong,&nbsp;Qingqing Hou,&nbsp;Yongyan Tang,&nbsp;Min He,&nbsp;Xuewei Chen,&nbsp;Weitao Li","doi":"10.1111/jipb.13788","DOIUrl":"10.1111/jipb.13788","url":null,"abstract":"<p>The loss and gain of <i>OsNAS3</i> function both positively influence plant disease resistance. Overexpression of <i>OsNAS3</i> boosts blast resistance by promoting nicotianamine accumulation, thereby enhancing blast resistance. Conversely, knockout of <i>OsNAS3</i> increases ethylene biosynthesis, also contributing to improved blast resistance.\u0000\u0000 <figure>\u0000 <div><picture>\u0000 <source></source></picture><p></p>\u0000 </div>\u0000 </figure></p>","PeriodicalId":195,"journal":{"name":"Journal of Integrative Plant Biology","volume":"66 12","pages":"2581-2585"},"PeriodicalIF":9.3,"publicationDate":"2024-10-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jipb.13788","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142491706","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信