Molecular Plant-microbe Interactions最新文献

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Closing the Information Gap Between the Field and Scientific Literature for Improved Disease Management, with a Focus on Rice and Bacterial Blight. 缩小田间与科学文献之间的信息差距,改善病害管理--重点关注水稻和细菌性枯萎病。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-01-24 DOI: 10.1094/MPMI-07-24-0075-FI
Eliza P I Loo, Boris Szurek, Yugander Arra, Melissa Stiebner, Marcel Buchholzer, B N Devanna, Casiana M Vera Cruz, Wolf B Frommer
{"title":"Closing the Information Gap Between the Field and Scientific Literature for Improved Disease Management, with a Focus on Rice and Bacterial Blight.","authors":"Eliza P I Loo, Boris Szurek, Yugander Arra, Melissa Stiebner, Marcel Buchholzer, B N Devanna, Casiana M Vera Cruz, Wolf B Frommer","doi":"10.1094/MPMI-07-24-0075-FI","DOIUrl":"10.1094/MPMI-07-24-0075-FI","url":null,"abstract":"<p><p>A path to sustainably reduce world hunger, food insecurity, and malnutrition is to close the crop yield gap and, particularly, lower losses due to pathogens. Breeding resistant crops is key to achieving this goal, which is an effort requiring collaboration among stakeholders, scientists, breeders, farmers, and policymakers. During a disease outbreak, epidemiologists survey the occurrence of a disease after which pathologists investigate mechanisms to stop an infection. Policymakers then implement strategies with farmers and breeders to overcome the outbreak. Information flow from the field to the lab and back to the field involves several processing hubs that require different information inputs. Failure to communicate the necessary information results in the transfer of meaningless data. Here, we discuss gaps in information acquisition and transfer between the field and laboratory. Using rice bacterial blight disease as an example, we discuss pathogen biology and disease resistance to point out the importance of reporting pathogen strains that caused an outbreak to optimize the deployment of resistant crop varieties. We examine differences between infection in the field and assays performed in the laboratory to draw awareness of possible misinformation concerning plant resistance or susceptibility. We discuss key data considered useful for reporting disease outbreaks, sampling bias, and suggestions for improving data quality. We also touch on the knowledge gap in the state-of-the-art literature regarding disease dispersal and transmission. We use a recent case study to exemplify the gaps mentioned. We conclude by highlighting potential actions that may contribute to food security and to closing the yield gap. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"134-141"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142056127","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative Review of Fusarium graminearum Infection in Maize and Wheat: Similarities in Resistance Mechanisms and Future Directions. 禾谷镰刀菌感染玉米和小麦的比较研究:抗性机制的相似性与未来发展方向。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-04-03 DOI: 10.1094/MPMI-08-24-0083-FI
Sarah Lipps, Martin Bohn, Jessica Rutkoski, Carolyn Butts-Wilmsmeyer, Santiago Mideros, Tiffany Jamann
{"title":"Comparative Review of <i>Fusarium graminearum</i> Infection in Maize and Wheat: Similarities in Resistance Mechanisms and Future Directions.","authors":"Sarah Lipps, Martin Bohn, Jessica Rutkoski, Carolyn Butts-Wilmsmeyer, Santiago Mideros, Tiffany Jamann","doi":"10.1094/MPMI-08-24-0083-FI","DOIUrl":"10.1094/MPMI-08-24-0083-FI","url":null,"abstract":"<p><p><i>Fusarium graminearum</i> is one of the most important plant-pathogenic fungi that causes disease on wheat and maize, as it decreases yield in both crops and produces mycotoxins that pose a risk to human and animal health. Resistance to Fusarium head blight (FHB) in wheat is well studied and documented. However, resistance to Gibberella ear rot (GER) in maize is less understood, despite several similarities to FHB. In this review, we synthesize existing literature on the colonization strategies, toxin accumulation, genetic architecture, and potential mechanisms of resistance to GER in maize and compare it with what is known regarding FHB in wheat. There are several similarities in the infection and colonization strategies of <i>F. graminearum</i> in maize and wheat. We describe multiple types of GER resistance in maize and identify distinct genetic regions for each resistance type. We discuss the potential of phenylpropanoids for biochemical resistance to <i>F. graminearum.</i> Phenylpropanoids are well characterized, and there are many similarities in their functional roles for resistance between wheat and maize. These insights can be utilized to improve maize germplasm for GER resistance and are also useful for FHB resistance breeding and management. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"142-159"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142864899","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Full Issue PDF. 全文PDF。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 DOI: 10.1094/MPMI-38-2
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引用次数: 0
The Molecular Dialogue Between Zymoseptoria tritici and Wheat. 三尖杉菌与小麦之间的分子对话。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-01-27 DOI: 10.1094/MPMI-08-24-0091-IRW
Lukas Meile, Cristian Carrasco-López, Cécile Lorrain, Gert H J Kema, Cyrille Saintenac, Andrea Sánchez-Vallet
{"title":"The Molecular Dialogue Between <i>Zymoseptoria tritici</i> and Wheat.","authors":"Lukas Meile, Cristian Carrasco-López, Cécile Lorrain, Gert H J Kema, Cyrille Saintenac, Andrea Sánchez-Vallet","doi":"10.1094/MPMI-08-24-0091-IRW","DOIUrl":"10.1094/MPMI-08-24-0091-IRW","url":null,"abstract":"<p><p><i>Zymoseptoria tritici</i> is a highly damaging pathogen that causes high wheat yield losses in temperate climates. <i>Z. tritici</i> emerged during the domestication of wheat in the Fertile Crescent and has been extensively used as a model system for population genetic and genomic studies. New genetic tools and resources have provided a better understanding of the molecular components involved in the wheat-<i>Z. tritici</i> interaction, which is highlighted by the cloning of three wheat resistance genes and four <i>Z. tritici</i> avirulence genes. Despite the considerable progress made in the last few years, the mechanisms that mediate <i>Z. tritici</i> colonization remain largely unknown. In this review, we summarize the latest advances in understanding the molecular components mediating wheat-<i>Z. tritici</i> interactions, and we discuss future research lines to close current knowledge gaps. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"118-133"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142624169","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A Genome-Wide Association Study Identifies Markers and Candidate Genes Affecting Tolerance to the Wheat Pathogen Zymoseptoria tritici. 一项全基因组关联研究鉴定了影响小麦病原菌酵母病耐受性的标记和候选基因。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-04-02 DOI: 10.1094/MPMI-08-24-0085-FI
Alexey Mikaberidze, Bruce A McDonald, Lukas Kronenberg
{"title":"A Genome-Wide Association Study Identifies Markers and Candidate Genes Affecting Tolerance to the Wheat Pathogen <i>Zymoseptoria tritici</i>.","authors":"Alexey Mikaberidze, Bruce A McDonald, Lukas Kronenberg","doi":"10.1094/MPMI-08-24-0085-FI","DOIUrl":"10.1094/MPMI-08-24-0085-FI","url":null,"abstract":"<p><p>Plants defend themselves against pathogens using either resistance, measured as the host's ability to limit pathogen multiplication, or tolerance, measured as the host's ability to reduce the negative effects of infection. Tolerance is a promising trait for crop breeding, but its genetic basis has rarely been studied and remains poorly understood. Here, we reveal the genetic basis of leaf tolerance to the fungal pathogen <i>Zymoseptoria tritici</i> that causes the globally important septoria tritici blotch (STB) disease on wheat. Leaf tolerance to <i>Z. tritici</i> is a quantitative trait that was recently discovered in wheat by using automated image analyses that quantified the symptomatic leaf area and counted the number of pycnidia found on the same leaf. A genome-wide association study identified four chromosome intervals associated with tolerance and a separate chromosome interval associated with resistance. Within these intervals, we identified candidate genes, including wall-associated kinases similar to <i>Stb6</i>, the first cloned STB resistance gene. Our analysis revealed a strong negative genetic correlation between tolerance and resistance to STB, indicative of a trade-off. Such a trade-off between tolerance and resistance would hinder breeding simultaneously for both traits, but our findings suggest a way forward using marker-assisted breeding. We expect that the methods described here can be used to characterize tolerance to other fungal diseases that produce visible fruiting bodies, such as speckled leaf blotch on barley, potentially unveiling conserved tolerance mechanisms shared among plant species. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"265-274"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143586341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Beyond Asexual: Genomics-Driven Progress in Unveiling Sexual Reproduction in Cereal Rust Fungi. 超越无性:基因组学驱动的谷类锈菌有性生殖研究进展。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-03-19 DOI: 10.1094/MPMI-10-24-0122-FI
Shideh Mojerlou, Mareike Moeller, Benjamin Schwessinger, Julian Rodriguez-Algaba
{"title":"Beyond Asexual: Genomics-Driven Progress in Unveiling Sexual Reproduction in Cereal Rust Fungi.","authors":"Shideh Mojerlou, Mareike Moeller, Benjamin Schwessinger, Julian Rodriguez-Algaba","doi":"10.1094/MPMI-10-24-0122-FI","DOIUrl":"10.1094/MPMI-10-24-0122-FI","url":null,"abstract":"<p><p>Recent advances in genomics technologies have revolutionized our understanding of cereal rust fungi, providing unprecedented insights into the complexities of their sexual life cycle. Genomic approaches, including long-read sequencing, genome assembly, and haplotype phasing technologies, have revealed critical insights into mating systems, genetic diversity, virulence evolution, and host adaptation. Population genomics studies have uncovered diverse reproductive strategies across different cereal rust species and geographic regions, highlighting the interplay between sexual recombination and asexual reproduction. Transcriptomics have begun to unravel the gene expression networks driving sexual reproduction, and complementary omics approaches such as proteomics and metabolomics offer potential insights into the underlying molecular processes. Despite this progress, many aspects of cereal rust sexual reproduction remain elusive. Integrating multiple omics approaches with advanced cell biology techniques can help address these knowledge gaps, particularly in understanding sexual reproduction and its role in pathogen evolution. This comprehensive approach will be crucial for developing more targeted and resilient crop protection strategies, ultimately contributing to global food security. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"206-212"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142770384","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
ZymoSoups: A High-Throughput Forward Genetics Method for Rapid Identification of Virulence Genes in Zymoseptoria tritici. ZymoSoups:高通量正向遗传学方法,用于快速鉴定三尖杉球孢菌(Zymoseptoria tritici)的毒力基因。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-01-24 DOI: 10.1094/MPMI-08-24-0082-TA
Haider Ali, Megan C McDonald, Graeme J Kettles
{"title":"ZymoSoups: A High-Throughput Forward Genetics Method for Rapid Identification of Virulence Genes in <i>Zymoseptoria tritici</i>.","authors":"Haider Ali, Megan C McDonald, Graeme J Kettles","doi":"10.1094/MPMI-08-24-0082-TA","DOIUrl":"10.1094/MPMI-08-24-0082-TA","url":null,"abstract":"<p><p>Septoria tritici blotch is caused by the fungus <i>Zymoseptoria tritici</i> and poses a major threat to wheat productivity. There are over 20 mapped loci in wheat that confer strong (gene-for-gene) resistance against this pathogen, but the corresponding genes in <i>Z. tritici</i> that confer virulence against distinct <i>R</i> genes remain largely unknown. In this study, we developed a rapid forward genetics methodology to identify genes that enable <i>Z. tritici</i> to gain virulence on previously resistant wheat varieties. We used the known gene-for-gene interaction between <i>Stb6</i> and <i>AvrStb6</i> as a proof of concept that this method could quickly recover single candidate virulence genes. We subjected the avirulent <i>Z. tritici</i> strain IPO323, which carries the recognized <i>AvrStb6</i> allele, to ultraviolet (UV) mutagenesis and generated a library of over 66,000 surviving spores. We screened these survivors on leaves of the resistant wheat variety Cadenza in mixtures (soups) ranging from 100 to 500 survivors per soup. We identified five soups with a gain-of-virulence (GoV) phenotype relative to the IPO323 parental strain and re-sequenced 18 individual isolates, including four control isolates and two isolates lacking virulence, when screened individually. Of the 12 confirmed GoV isolates, one had a single nucleotide polymorphism (SNP) in the <i>AvrStb6</i> coding region. The other 11 GoV isolates exhibited large (approximately 70 kb) deletions at the end of chromosome 5, including the <i>AvrStb6</i> locus. Our findings demonstrate the efficiency of this forward genetic approach in elucidating the genetic basis of qualitative resistance to <i>Z. tritici</i> and the potential to rapidly identify other, currently unknown, <i>Avr</i> genes in this pathogen. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"226-234"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142350548","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptional Profiling and Genetic Mapping of Barley Responses to Bacterial Flagellin. 大麦对细菌鞭毛蛋白反应的转录谱分析和遗传定位。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-04-10 DOI: 10.1094/MPMI-12-24-0159-FI
Elizabeth K Brauer, Whynn Bosnich, Monique Power, Doris Luckert, Sarita Khanal, Nathan Liang, Reid James, Moatter Syed, Martin Charette, Danielle Wolfe, Arezo Pattang, Hannah Morrison, Stephanie Poncos, Melodie Laniel, James Tucker, Raja Khanal, Jean-Sébastien Parent, Bahram Samanfar
{"title":"Transcriptional Profiling and Genetic Mapping of Barley Responses to Bacterial Flagellin.","authors":"Elizabeth K Brauer, Whynn Bosnich, Monique Power, Doris Luckert, Sarita Khanal, Nathan Liang, Reid James, Moatter Syed, Martin Charette, Danielle Wolfe, Arezo Pattang, Hannah Morrison, Stephanie Poncos, Melodie Laniel, James Tucker, Raja Khanal, Jean-Sébastien Parent, Bahram Samanfar","doi":"10.1094/MPMI-12-24-0159-FI","DOIUrl":"10.1094/MPMI-12-24-0159-FI","url":null,"abstract":"<p><p>Diverse plant species detect bacterial flagellin using leucine-rich repeat receptor-like kinases to activate defense responses and promote resistance against bacterial invasion. In barley, the impact of flagellin on inducible defense responses has not been fully described. Here, we report that the flagellin-derived flg22 peptide induces callose, reactive oxygen species (ROS) bursts, and differential expression of 2,603 genes in barley. Cultivated barley genotypes produce different amplitudes of flg22-induced ROS bursts, indicating genetic variation for microbe-associated molecular pattern responses. Association mapping revealed a region on chromosome 7 underlying variation in flg22-induced ROS bursts, which contains 12 flg22-induced genes. Genotypes with higher flg22 responses had higher induced resistance to <i>Xanthomonas translucens</i> pv. <i>translucens</i> (<i>Xtt</i>), the causal organism of bacterial leaf streak. The flg22 region of <i>Xtt</i> flagellin evades detection in both barley and Arabidopsis, and a single amino acid change can restore immunogenicity of the peptide. Together, this work underlines the effectiveness of the flagellin-triggered defenses in promoting barley resistance to <i>Xtt</i>, which evades recognition of the flg22 region in its host. [Formula: see text]Copyright © 2025 His Majesty the King in Right of Canada, as represented by the Minister of Agriculture and Agri-Food Canada. This is an open access article distributed under the CC BY-NC-ND 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"344-352"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143586355","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Thermal Adaptation in Worldwide Collections of a Major Fungal Pathogen. 一种主要真菌病原体在世界范围内的热适应性。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2025-03-28 DOI: 10.1094/MPMI-09-24-0112-FI
Silvia Miñana-Posada, Cécile Lorrain, Bruce A McDonald, Alice Feurtey
{"title":"Thermal Adaptation in Worldwide Collections of a Major Fungal Pathogen.","authors":"Silvia Miñana-Posada, Cécile Lorrain, Bruce A McDonald, Alice Feurtey","doi":"10.1094/MPMI-09-24-0112-FI","DOIUrl":"10.1094/MPMI-09-24-0112-FI","url":null,"abstract":"<p><p>Adaptation to new climates poses a significant challenge for plant pathogens during range expansion, highlighting the importance of understanding their response to climate to accurately forecast future disease outbreaks. The wheat pathogen <i>Zymoseptoria tritici</i> is ubiquitous across most wheat production regions distributed across diverse climate zones. We explored the genetic architecture of thermal adaptation using a global collection of 411 <i>Z. tritici</i> strains that were phenotyped across a wide range of temperatures and then included in a genome-wide association study. Our analyses provided evidence for local thermal adaptation in <i>Z. tritici</i> populations worldwide, with a significant positive correlation between bioclimatic variables and optimal growth temperatures. We also found a high variability in thermal performance among <i>Z. tritici</i> strains from the same field populations, reflecting the high evolutionary potential of this pathogen at the field scale. We identified 69 genes putatively involved in thermal adaptation, including one high-confidence candidate potentially involved in cold adaptation. These results highlight the complex polygenic nature of thermal adaptation in <i>Z. tritici</i> and suggest that this pathogen is likely to adapt well when confronted with climate change. [Formula: see text] Copyright © 2025 The Author(s). This is an open access article distributed under the CC BY-NC-ND 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"252-264"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142932373","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Majority of the Highly Variable NLRs in Maize Share Genomic Location and Contain Additional Target-Binding Domains. 玉米中大多数高度可变的 NLRs 具有相同的基因组位置,并含有额外的目标结合域。
IF 3.2 3区 生物学
Molecular Plant-microbe Interactions Pub Date : 2025-03-01 Epub Date: 2024-11-23 DOI: 10.1094/MPMI-05-24-0047-FI
Daniil M Prigozhin, Chandler A Sutherland, Sanjay Rangavajjhala, Ksenia V Krasileva
{"title":"Majority of the Highly Variable NLRs in Maize Share Genomic Location and Contain Additional Target-Binding Domains.","authors":"Daniil M Prigozhin, Chandler A Sutherland, Sanjay Rangavajjhala, Ksenia V Krasileva","doi":"10.1094/MPMI-05-24-0047-FI","DOIUrl":"10.1094/MPMI-05-24-0047-FI","url":null,"abstract":"<p><p>Nucleotide-binding, leucine-rich repeat (LRR) proteins (NLRs) are a major class of immune receptors in plants. NLRs include both conserved and rapidly evolving members; however, their evolutionary trajectory in crops remains understudied. Availability of crop pan-genomes enables analysis of the recent events in the evolution of this highly complex gene family within domesticated species. Here, we investigated the NLR complement of 26 nested association mapping (NAM) founder lines of maize. We found that maize has just four main subfamilies containing rapidly evolving highly variable NLR (hvNLR) receptors. Curiously, three of these phylogenetically distinct hvNLR lineages are located in adjacent clusters on chromosome 10. Members of the same hvNLR clade show variable expression and methylation across lines and tissues, which is consistent with their rapid evolution. By combining sequence diversity analysis and AlphaFold2 computational structure prediction, we predicted ligand-binding sites in the hvNLRs. We also observed novel insertion domains in the LRR regions of two hvNLR subfamilies that likely contribute to target recognition. To make this analysis accessible, we created NLRCladeFinder, a Google Colaboratory notebook, that accepts any newly identified NLR sequence, places it in the evolutionary context of the maize pan-NLRome, and provides an updated clade alignment, phylogenetic tree, and sequence diversity information for the gene of interest. [Formula: see text] Copyright © 2024 The Author(s). This is an open access article distributed under the CC BY 4.0 International license.</p>","PeriodicalId":19009,"journal":{"name":"Molecular Plant-microbe Interactions","volume":" ","pages":"275-284"},"PeriodicalIF":3.2,"publicationDate":"2025-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141627218","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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