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Genome and transcriptome reveal lithophilic adaptation of Cladophialophora brunneola , a new rock-inhabiting fungus 基因组和转录组揭示了一种新的岩石真菌Cladophialophora brunneola的嗜石性适应
2区 生物学
Mycology Pub Date : 2023-10-26 DOI: 10.1080/21501203.2023.2256764
Rong Fu, Wei Sun, Bingjie Liu, Jingzu Sun, Qi Wu, Xingzhong Liu, Meichun Xiang
{"title":"Genome and transcriptome reveal lithophilic adaptation of <i>Cladophialophora brunneola</i> , a new rock-inhabiting fungus","authors":"Rong Fu, Wei Sun, Bingjie Liu, Jingzu Sun, Qi Wu, Xingzhong Liu, Meichun Xiang","doi":"10.1080/21501203.2023.2256764","DOIUrl":"https://doi.org/10.1080/21501203.2023.2256764","url":null,"abstract":"Rock-inhabiting fungi (RIF) are slow-growing microorganisms that inhabit rocks and exhibit exceptional stress tolerance owing to their thick melanised cell walls. This study reports the identification of a novel rock-inhabiting fungus, Cladophialophora brunneola sp. nov. which was isolated from a karst landform in Guizhou, China, using a combination of morphological and phylogenetic analyses. The genome of C. brunneola was sequenced and assembled, with a total size of approximately 33.8 Mb, encoding 14,168 proteins and yielding an N50 length of 1.88 Mb. C. brunneola possessed a larger proportion of species-specific genes, and phylogenomic analysis positioned it in an early diverged lineage within Chaetothyriales. In comparison to non-RIF, C. brunneola displayed reduction in carbohydrate-active enzyme families (CAZymes) and secondary metabolite biosynthetic gene clusters (BGCs). Transcriptome analysis conducted under PEG-induced drought stress revealed elevated expression levels of genes associated with melanin synthesis pathways, cell wall biosynthesis, and lipid metabolism. This study contributes to our understanding of the genomic evolution and polyextremotolerance exhibited by rock-inhabiting fungi.","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"22 5","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136376648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Candida albicans overgrowth disrupts the gut microbiota in mice bearing oral cancer 白色念珠菌的过度生长破坏了口腔癌小鼠的肠道微生物群
2区 生物学
Mycology Pub Date : 2023-10-26 DOI: 10.1080/21501203.2023.2256761
Xu Wang, Shuangshaung Wu, Linman Li, Zhimin Yan
{"title":"<i>Candida albicans</i> overgrowth disrupts the gut microbiota in mice bearing oral cancer","authors":"Xu Wang, Shuangshaung Wu, Linman Li, Zhimin Yan","doi":"10.1080/21501203.2023.2256761","DOIUrl":"https://doi.org/10.1080/21501203.2023.2256761","url":null,"abstract":"Candida albicans is one of the most common opportunistic fungi in cancer patients. This study explored the influence of C. albicans on gut microbiota in oral tumour-bearing mice by means of 16S rRNA sequencing and ITS sequencing. It was found that C. albicans infection induced the decrease of alpha diversity of bacteria and fungi in the gut microbiome. For the bacteria, C. albicans caused the reduction of Ralstonia, Alistipes, Clostridia UCG-014, Ruminococcus, and Lachnospiraceae NK4A136 group. For the fungi, C. albicans inhibited the growth of other fungi including Aspergillus, Cladosporium, and Bipolaris. The neutralisation of γδT cells partly alleviated the out-of-balance of Firmicutes/Bacteroidota (F/B) ratio in the gut caused by C. albicans infection. However, γδT cell neutralisation boosted the overgrowth of C. albicans. Additionally, IL-17A neutralisation aggravated the microbial dysbiosis of bacteria and fungi caused by C. albicans infection. Further analysis indicated that C. albicans overgrowth might influence the correlations between fungal and bacterial kingdoms. In conclusion, C. albicans infection disturbed the gut microbiota of both bacteria and fungi in oral tumour-bearing mice, which may be associated with the intestinal immune components including γδT cells and IL-17A.","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"16 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"136376482","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advancements in the taxonomic study of myxomycetes (Myxogastrea) in China 中国黏菌(Myxogastrea)分类研究进展
2区 生物学
Mycology Pub Date : 2023-10-20 DOI: 10.1080/21501203.2023.2255031
Gu Rao, Shuanglin Chen
{"title":"Advancements in the taxonomic study of myxomycetes (Myxogastrea) in China","authors":"Gu Rao, Shuanglin Chen","doi":"10.1080/21501203.2023.2255031","DOIUrl":"https://doi.org/10.1080/21501203.2023.2255031","url":null,"abstract":"Species in the class Myxomycetes (or Myxogastrea) are essential components of biodiversity and play important ecological roles in terrestrial ecosystems, especially in forests. Studies on the taxonomy and diversity of these organisms started late in China. However, significant progress in China has been made in modern taxonomic studies on myxomycetes based on long-term species surveying and specimen collecting. The existing achievements have shown that comprehensive and continuous studies on the taxonomy and diversity of myxomycetes in China have the potential to enhance global biodiversity and improve the geographic distribution pattern of myxomycetes. Therefore, building on the current research foundation and expanding myxomycete research in a wider and more in-depth approach is imperative.","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"3 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135616645","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Risk of candidiasis associated with interleukin-17 inhibitors: implications and management 白细胞介素-17抑制剂与念珠菌病相关的风险:影响和管理
2区 生物学
Mycology Pub Date : 2023-10-20 DOI: 10.1080/21501203.2023.2265664
Hazrat Bilal, Muhammad Nadeem Khan, Sabir Khan, Wenjie Fang, Wenqiang Chang, Bin Yin, Ning-Jing Song, Zhongrong Liu, Dongxing Zhang, Fen Yao, Xun Wang, Qian Wang, Lin Cai, Bing Hou, Jiayue Wang, Chunyan Mao, Lingxi Liu, Yuebin Zeng
{"title":"Risk of candidiasis associated with interleukin-17 inhibitors: implications and management","authors":"Hazrat Bilal, Muhammad Nadeem Khan, Sabir Khan, Wenjie Fang, Wenqiang Chang, Bin Yin, Ning-Jing Song, Zhongrong Liu, Dongxing Zhang, Fen Yao, Xun Wang, Qian Wang, Lin Cai, Bing Hou, Jiayue Wang, Chunyan Mao, Lingxi Liu, Yuebin Zeng","doi":"10.1080/21501203.2023.2265664","DOIUrl":"https://doi.org/10.1080/21501203.2023.2265664","url":null,"abstract":"The application of interleukin-17 (IL-17) inhibitors, including secukinumab, ixekizumab, brodalumab, and bimekizumab, are associated with elevated risk of candidiasis. These medications interfere with the IL-17 pathway, which is essential for maintaining mucosal barriers and coordinating the immune response against Candida species. The observational data and clinical trials demonstrate the increased incidence of candidiasis in individuals treated with IL-17 inhibitors. Brodalumab and bimekizumab pose a greater risk than secukinumab in eliciting candidiasis, whereas the data regarding ixekizumab are equivocal. Higher doses and prolonged treatment duration of IL-17 inhibitors increase the risk of candidiasis by compromising the immune response against Candida species. Prior to prescribing IL-17 inhibitors, healthcare professionals should comprehensively evaluate patients’ medical histories and assess their risk factors. Patients should be educated on the signs and symptoms of candidiasis to facilitate early detection and intervention. Future research should focus on identifying the risk factors associated with candidiasis in patients receiving IL-17 inhibitors. Prospective studies and long-term surveillance are required to explore the impact of specific inhibitors on the incidence and severity of candidiasis and to evaluate the effectiveness of combination therapies, such as concurrent use of IL-17 inhibitors and prophylactic antifungal agents.","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"5 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135570624","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Therapeutic properties of Inonotus obliquus (Chaga mushroom): a review 桦尺蠖(Inonotus obliquus)的治疗特性综述
2区 生物学
Mycology Pub Date : 2023-10-20 DOI: 10.1080/21501203.2023.2260408
Phoebe Tee Yon Ern, Tang Yin Quan, Fung Shin Yee, Adeline Chia Yoke Yin
{"title":"Therapeutic properties of <i>Inonotus obliquus</i> (Chaga mushroom): a review","authors":"Phoebe Tee Yon Ern, Tang Yin Quan, Fung Shin Yee, Adeline Chia Yoke Yin","doi":"10.1080/21501203.2023.2260408","DOIUrl":"https://doi.org/10.1080/21501203.2023.2260408","url":null,"abstract":"Inonotus obliquus, also known as Chaga, is a medicinal mushroom that has been used for therapeutic purposes since the sixteenth century. Collections of folk medicine record the application of Chaga for the treatment of diseases such as gastrointestinal cancer, diabetes, bacterial infection, and liver diseases. Modern research provides scientific evidence of the therapeutic properties of I. obliquus extracts, including anti-inflammatory, antioxidant, anticancer, anti-diabetic, anti-obesity, hepatoprotective, renoprotective, anti-fatigue, antibacterial, and antiviral activities. Various bioactive compounds, including polysaccharides, triterpenoids, polyphenols, and lignin metabolites have been found to be responsible for the health-benefiting properties of I. obliquus. Furthermore, some studies have elucidated the underlying mechanisms of the mushroom’s medicinal effects, revealing the compounds’ interactions with enzymes or proteins of important pathways. Thus, this review aims to explore available information on the therapeutic potentials of Inonotus obliquus for the development of an effective naturally sourced treatment option.","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135616537","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Histoplasmosis: an epidemiological and clinical update in China, review and a case report 组织胞浆菌病:中国流行病学和临床进展、综述和病例报告
2区 生物学
Mycology Pub Date : 2023-09-26 DOI: 10.1080/21501203.2023.2259934
Lihua Chen, Danyang Hu, Congming Zhang, Tianrui Wu, Xiangning Cheng, Ferry Hagen, Hui Zhu, Shuwen Deng
{"title":"Histoplasmosis: an epidemiological and clinical update in China, review and a case report","authors":"Lihua Chen, Danyang Hu, Congming Zhang, Tianrui Wu, Xiangning Cheng, Ferry Hagen, Hui Zhu, Shuwen Deng","doi":"10.1080/21501203.2023.2259934","DOIUrl":"https://doi.org/10.1080/21501203.2023.2259934","url":null,"abstract":"Histoplasmosis is a systemic mycosis caused by the dimorphic fungus in the genus Histoplasma. Histoplasmosis is overlooked in China. This study aims to provide an epidemiological and clinical update on histoplasmosis in China by literature review. We reviewed cases of histoplasmosis reported in recent 11 years and described a case of histoplasmosis-triggered hemophagocytic lymphohistiocytosis (HLH) in an immunocompetent patient. A total of 225 cases of histoplasmosis diagnosed in China between 2012 and 2022 were involved in this study, compared with 300 cases reviewed from 1990 to 2011, an increasing number of cases of histoplasmosis have been diagnosed in the last 11 years. The majority of cases of histoplasmosis were autochthonous cases, mainly from provinces Sichuan (56/225, 24.9%), Hunan (50/225, 22.2%), Guangdong (31/225, 13.8%), and Yunnan (24/225, 10.7%). Higher incidence (52.5%, 53/99) of histoplasmosis occurred in immunocompetent patients which is similar to those from the previous 21 years, and the prevalence of the disease did not vary highly over time. Of note, the number of histoplasmosis cases is increasing, and the geographic distribution is shifting southwards over time. Improved awareness is critically important for informing clinical practice in China.","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"70 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135718772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The disulphide cleavage derivative (C42-4) of 11′-deoxyverticillin A (C42) fails to induce apoptosis and genomic instability in HeLa cells 11 ' -脱氧维拉西林A (C42)的二硫裂解衍生物(C42-4)不能诱导HeLa细胞凋亡和基因组不稳定
2区 生物学
Mycology Pub Date : 2023-09-13 DOI: 10.1080/21501203.2023.2248168
Bolin Hou, Huaiyi Yang, Erwei Li, Xuejun Jiang
{"title":"The disulphide cleavage derivative (C42-4) of 11′-deoxyverticillin A (C42) fails to induce apoptosis and genomic instability in HeLa cells","authors":"Bolin Hou, Huaiyi Yang, Erwei Li, Xuejun Jiang","doi":"10.1080/21501203.2023.2248168","DOIUrl":"https://doi.org/10.1080/21501203.2023.2248168","url":null,"abstract":"","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"2014 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135741112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Advances in the production of fungi-derived lignocellulolytic enzymes using agricultural wastes 利用农业废弃物生产真菌来源的木质纤维素水解酶的研究进展
2区 生物学
Mycology Pub Date : 2023-09-13 DOI: 10.1080/21501203.2023.2253827
Jiaqi Huang, Jianfei Wang, Shijie Liu
{"title":"Advances in the production of fungi-derived lignocellulolytic enzymes using agricultural wastes","authors":"Jiaqi Huang, Jianfei Wang, Shijie Liu","doi":"10.1080/21501203.2023.2253827","DOIUrl":"https://doi.org/10.1080/21501203.2023.2253827","url":null,"abstract":"Lignocellulolytic enzymes play an important role in various industrial applications as well as the sustainable valorisation of lignocellulosic materials. Enzyme production using lignocellulosic fungi has shown great advantages such as high enzyme diversity, high production efficiency, and the availability of solid waste as raw materials. Agricultural waste, an abundant and non-food competitive feedstock, can be used to produce fungal lignocellulolytic enzymes. Pretreatment helps break down the complex structure of the raw material, thereby significantly improving product yield but also requiring more energy consumption. Multiple fermentation technologies, including submerged fermentation, solid-state fermentation, and co-culture, can be used for producing lignocellulolytic enzymes. Process optimisation may promote the yield and productivity of such enzymes without additional investment. Genetic engineering is also useful for enhancing enzyme production to meet industrial requirements. This review summarises the research progress in the fungal production of lignocellulolytic enzymes from various agricultural wastes via advanced fermentation strategies. It aims to provide technical references for the scale-up production of fungal lignocellulolytic enzymes.","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"135783512","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of fungi in the diagnosis of colorectal cancer. 真菌在大肠癌诊断中的作用
IF 4.2 2区 生物学
Mycology Pub Date : 2023-09-03 eCollection Date: 2024-01-01 DOI: 10.1080/21501203.2023.2249492
Xu-Huan Li, Ming-Ming Luo, Zu-Xiu Wang, Qi Wang, Bin Xu
{"title":"The role of fungi in the diagnosis of colorectal cancer.","authors":"Xu-Huan Li, Ming-Ming Luo, Zu-Xiu Wang, Qi Wang, Bin Xu","doi":"10.1080/21501203.2023.2249492","DOIUrl":"10.1080/21501203.2023.2249492","url":null,"abstract":"<p><p>Colorectal cancer (CRC) is a prevalent tumour with high morbidity rates worldwide, and its incidence among younger populations is rising. Early diagnosis of CRC can help control the associated mortality. Fungi are common microorganisms in nature. Recent studies have shown that fungi may have a similar association with tumours as bacteria do. As an increasing number of tumour-associated fungi are discovered, this provides new ideas for the diagnosis and prognosis of tumours. The relationship between fungi and colorectal tumours has also been recently identified by scientists. Therefore, this paper describes the limitations and prospects of the application of fungi in diagnosing CRC and predicting CRC prognosis.</p>","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"1 1","pages":"17-29"},"PeriodicalIF":4.2,"publicationDate":"2023-09-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10977015/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41889202","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Heteroverticillium phytelephatis gen. et sp. nov. intercepted from nuts of Phytelephas macrocarpa, with an updated phylogenetic assessment of Nectriaceae. 从 Phytelephas macrocarpa 坚果中截获的 Heteroverticillium phytelephatis gen.
IF 4.6 2区 生物学
Mycology Pub Date : 2023-06-11 eCollection Date: 2023-01-01 DOI: 10.1080/21501203.2023.2210603
Xin Li, Shi-Ling Han, Yin-Yin Zhang, Lei Cai, Peng Zhao
{"title":"<i>Heteroverticillium phytelephatis</i> gen. et sp. nov. intercepted from nuts of <i>Phytelephas macrocarpa</i>, with an updated phylogenetic assessment of <i>Nectriaceae</i>.","authors":"Xin Li, Shi-Ling Han, Yin-Yin Zhang, Lei Cai, Peng Zhao","doi":"10.1080/21501203.2023.2210603","DOIUrl":"10.1080/21501203.2023.2210603","url":null,"abstract":"<p><p>An entry postal parcel with mature nuts of <i>Phytelephas macrocarpa</i> from Togo was inspected at Dalian Customs (China) in December 2021, and four strains were isolated from symptomatic tissues of the nuts. Based on morphological observations and molecular phylogenetic analyses, above strains were identified as a new species which is mainly characterised by the verticillately branching conidiophores. Based on multi-locus phylogenetic analyses, this new species forms a monophyletic clade closely related to <i>Corallomycetella, Paracremonium</i> and <i>Xenoacremonium</i> but could not be accommodated in any known genera of <i>Nectriaceae</i>. Thus, a new genus <i>Heteroverticillium</i> is established to accommodate this new species (<i>H. phytelephatis</i>). To our knowledge, this is the first time that Chinese customs have intercepted a new fungal genus. In addition, we provided an updated backbone tree for the generic relationships in <i>Nectriaceae</i>, which may largely assist future identification of nectriaceous fungi to genus level in quarantine inspections. Based on our analysis, <i>Varicosporellopsis</i> is likely a late synonym of <i>Paracremonium</i>.</p>","PeriodicalId":18833,"journal":{"name":"Mycology","volume":"14 3","pages":"155-174"},"PeriodicalIF":4.6,"publicationDate":"2023-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://ftp.ncbi.nlm.nih.gov/pub/pmc/oa_pdf/11/14/TMYC_14_2210603.PMC10424595.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10547149","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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