2013 IEEE 10th International Symposium on Biomedical Imaging最新文献

筛选
英文 中文
Sparse magnetic resonance imaging using tagging RF pulses 稀疏磁共振成像使用标记射频脉冲
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556472
V. Singh, A. Tewfik
{"title":"Sparse magnetic resonance imaging using tagging RF pulses","authors":"V. Singh, A. Tewfik","doi":"10.1109/ISBI.2013.6556472","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556472","url":null,"abstract":"Few fast magnetic resonance (MR) imaging techniques have proposed modifications to the MR signal encoding formulation in order to improve the performance guarantees of image recovery using compressed sensing. A limitation of the previously proposed encoding formulations is their difficult realization on the physical hardware. The deviation of realizable formulation from the theoretical model leads to operating characteristics which are clinically infeasible. In this paper, a novel MR signal encoding formulation using tagging radio-frequency pulses is proposed. The proposed formulation uses tagging pulses to uniquely modulate the longitudinal magnetization in the field-of-view for each MR excitation. The modulation of magnetization leads to mixing of information in the spatial Fourier space which improves the incoherence between the sensing and the sparsifying basis. The physical realization of the proposed formulation is promising due to the use of clinically active RF pulses. The preliminary results for image recovery experiments using the proposed formulation on an in-vivo dataset are comparably close and at times better than the results of the difficult-to-realize state-of-the-art formulation.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"104 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131551600","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An automated drusen detection system for classifying age-related macular degeneration with color fundus photographs 用彩色眼底照片分类老年性黄斑变性的自动检测系统
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556807
Yuanjie Zheng, B. Vanderbeek, Ebenezer Daniel, D. Stambolian, M. Maguire, D. Brainard, J. Gee
{"title":"An automated drusen detection system for classifying age-related macular degeneration with color fundus photographs","authors":"Yuanjie Zheng, B. Vanderbeek, Ebenezer Daniel, D. Stambolian, M. Maguire, D. Brainard, J. Gee","doi":"10.1109/ISBI.2013.6556807","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556807","url":null,"abstract":"We present a system of automated drusen detection from color fundus photographs with our ultimate goal being to automatically assess the risk for the development of Age-related Macular Degeneration (AMD). Our system incorporates learning based drusen detection and includes fundus image analysis techniques for image denoising, illumination correction and color transfer. In contrast to previous work, we incorporate both optimal color descriptors and robust multiscale local image descriptors in our drusen detection process. Our system was evaluated with color fundus photographs from two AMD clinical studies [1, 2]. By comparing our results to those obtained via manual drusen segmentation, we show that our system outperforms two state-of-the-art techniques.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"103 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131653951","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 32
Boundary detection in echocardiography using a Split Bregman edge detector and a topology preserving level set approach 超声心动图的边界检测使用分裂Bregman边缘检测器和拓扑保持水平集方法
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556415
N. Duggan, Hayden Schaeffer, C. L. Guyader, E. Jones, M. Glavin, L. Vese
{"title":"Boundary detection in echocardiography using a Split Bregman edge detector and a topology preserving level set approach","authors":"N. Duggan, Hayden Schaeffer, C. L. Guyader, E. Jones, M. Glavin, L. Vese","doi":"10.1109/ISBI.2013.6556415","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556415","url":null,"abstract":"In the current paper a novel approach for echocardiographic segmentation is proposed based on a combination of the Geometric Active Contour Split Bregman (GSB) method with a topology preserving level set method. The proposed method was tested against manual delineations on 20 frames across 2 datasets and achieved an average Hausdorff distance of 4.01 ± 1.06 mm and Mean Absolute distance of 1.62 ± 0.3 mm, which represented an enhanced performance when compared with intensity gradient and region based methods.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130796648","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Efficient extraction of 3D bone cells descriptors from micro-CT images 微ct图像中三维骨细胞描述符的高效提取
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556817
Pei Dong, S. Haupert, P. Gouttenoire, F. Peyrin
{"title":"Efficient extraction of 3D bone cells descriptors from micro-CT images","authors":"Pei Dong, S. Haupert, P. Gouttenoire, F. Peyrin","doi":"10.1109/ISBI.2013.6556817","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556817","url":null,"abstract":"While cell analysis is conventionally performed on 2D slices, novel micro and nano-CT system opens new perspectives in this area. Here, we show that synchrotron radiation (SR) micro-CT is well suited to analyze the 3D distribution of osteocyte lacunae in bone tissue. Osteocytes are receiving increasing interest in the comprehension of bone diseases. Here, we propose a fast automated method to extract 3D quantitative morphological descriptors on these cells. To this aim, after a fast connected component analysis applied on the segmented image, a moment-based approach and intrinsic volumes are calculated to derive 3D descriptors on each object. The segmentation is refined by eliminating artifacts according to some descriptors. Validation of segmentation and experimental results on twelve bone samples are presented. This method is efficient and is believed to open new perspectives to quantify physiopathologic changes at the cell level.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"93 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131015238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Validation of a non-rigid registration method for motion compensation in 4D ultrasound of the liver 肝脏四维超声运动补偿的非刚性配准方法验证
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556594
S. Vijayan, S. Klein, E. F. Hofstad, F. Lindseth, B. Ystgaard, T. Langø
{"title":"Validation of a non-rigid registration method for motion compensation in 4D ultrasound of the liver","authors":"S. Vijayan, S. Klein, E. F. Hofstad, F. Lindseth, B. Ystgaard, T. Langø","doi":"10.1109/ISBI.2013.6556594","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556594","url":null,"abstract":"Future therapy using focused ultrasound (FUS) to treat tumors in abdominal organs, such as the liver, must incorporate motion tracking of these organs due to breathing and drift caused by gravity and intestines (peristalsis). Motion tracking of the target (e.g. tumor) is needed to ensure accurately located sonications. We have performed a quantitative validation of a methodology for motion tracking of the liver with 4D (3D+time) ultrasound. The offline analysis was done using a recently published non-rigid registration algorithm that was specifically designed for motion estimation from dynamic imaging data. The method registers the entire 4D sequence in a group-wise optimization fashion, thus avoiding a bias towards a specifically chosen reference time point. Both spatial and temporal smoothness of the transformations are enforced by using a 4D free-form B-spline deformation model. For our evaluation, three healthy volunteers were scanned over several breath cycles from three different positions and angles on the abdomen (totally nine 4D scans). A skilled physician performed the scanning and manually annotated well-defined anatomic landmarks for assessment of the automatic algorithm. Four engineers each annotated these points in all time frames, the mean of which was taken as a gold standard. The error of the automatic motion estimation method was compared with inter-observer variability. The registration method estimated liver motion better than the observers and had an error (75% percentile over all datasets) of 1 mm. We conclude that the methodology was able to accurately track the motion of the liver in the 4D ultrasound data.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"9 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131242862","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 26
Assessment of cancer therapy effects using texton-based characterization of quantitative ultrasound parametric images 利用基于文本的定量超声参数图像表征来评估癌症治疗效果
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556788
M. Gangeh, A. Sadeghi-Naini, M. Kamel, G. Czarnota
{"title":"Assessment of cancer therapy effects using texton-based characterization of quantitative ultrasound parametric images","authors":"M. Gangeh, A. Sadeghi-Naini, M. Kamel, G. Czarnota","doi":"10.1109/ISBI.2013.6556788","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556788","url":null,"abstract":"This paper proposes the application of texton-based approach for textural characterization of quantitative ultrasound parametric maps, in order to assess noninvasively the progressive effects of cancer treatment in preclinical animal models. Xenograft tumour-bearing animals were treated with chemotherapy. Ultrasound data were acquired from tumours prior to, and at different times after exposure, and quantitative ultrasound spectral parametric maps were generated. Texton-based features were extracted from 0-MHz Intercept parametric maps and applied to differentiate between preand posttreatment states. The classification error was then translated into a quantitative measure of the treatment effects. Obtained results demonstrated a very good agreement with histological observations, and suggested that the proposed approach can be used noninvasively to evaluate the progressive effects of cancer treatment.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133335990","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 23
Automatic notch detection in retinal images 视网膜图像中的自动缺口检测
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556805
Mei Hui Tan, Ying Sun, S. Ong, Jiang Liu, M. Baskaran, T. Aung, T. Wong
{"title":"Automatic notch detection in retinal images","authors":"Mei Hui Tan, Ying Sun, S. Ong, Jiang Liu, M. Baskaran, T. Aung, T. Wong","doi":"10.1109/ISBI.2013.6556805","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556805","url":null,"abstract":"This paper presents a new method to detect notching in the optic cup using retinal images. Optic cup notching is an important feature in differentiating normal from glaucomatous eyes. The proposed notching detection method comprises four steps: disc and vessel segmentation, vessel bend detection at key regions, feature points selection and automatic classification. The key step of vessel bend detection involves computing the local curvature of the vessels, then ranking them based on the angle of vessel bend and the local gradient in the neighborhood region. The algorithm was tested on a set of color fundus images and achieved a notching detection rate of 88.9%, a false alarm rate of 4.0%, and an overall accuracy of 95.4%.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"9 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132669872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 18
3D Haar-like elliptical features for object classification in microscopy 三维haar样椭圆特征在显微镜下的物体分类
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556694
F. Amat, Philipp J. Keller
{"title":"3D Haar-like elliptical features for object classification in microscopy","authors":"F. Amat, Philipp J. Keller","doi":"10.1109/ISBI.2013.6556694","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556694","url":null,"abstract":"Object detection and classification are key tasks in computer vision that can facilitate high-throughput image analysis of microscopy data. We present a set of local image descriptors for three-dimensional (3D) microscopy datasets inspired by the well-known Haar wavelet framework. We add orientation, illumination and scale information by assuming that the neighborhood surrounding points of interests in the image can be described with ellipsoids, and we increase discriminative power by incorporating edge and shape information into the features. The calculation of the local image descriptors is implemented in a Graphics Processing Unit (GPU) in order to reduce computation time to 1 millisecond per object of interest. We present results for cell division detection in 3D time-lapse fluorescence microscopy with 97.6% accuracy.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134480147","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Automatic dendrite spines detection from x-ray tomography volumes 从x射线断层扫描体积中自动检测树突棘
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556505
X. Descombes, G. Malandain, C. Fonta, László Négyessy, R. Mokso
{"title":"Automatic dendrite spines detection from x-ray tomography volumes","authors":"X. Descombes, G. Malandain, C. Fonta, László Négyessy, R. Mokso","doi":"10.1109/ISBI.2013.6556505","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556505","url":null,"abstract":"We consider the problem of dendritic spine detection from X-ray micro-tomographic volumes that allow huge volume of tissue visualization. To compensate for the noise in data that induces false positives in the spine detection process, we first segment the dendrites. This segmentation is obtained by computing the medial axis and approximating the results by segments obtained with a 3D Hough transform. Dendrites are then reconstructed and a spine mask is obtained using the typical diameter of dendrites and distance between spine and dendrites. A point process is then optimized on this mask, thus providing the spine detection.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"37 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131689129","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Functional connectivity eigennetworks reveal different brain dynamics in multiple sclerosis patients 功能连接特征网络揭示多发性硬化症患者不同的脑动力学
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556528
Nora Leonardi, J. Richiardi, D. Ville
{"title":"Functional connectivity eigennetworks reveal different brain dynamics in multiple sclerosis patients","authors":"Nora Leonardi, J. Richiardi, D. Ville","doi":"10.1109/ISBI.2013.6556528","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556528","url":null,"abstract":"Resting state functional connectivity is defined as correlations in brain activity measured by functional magnetic resonance imaging without any stimulation paradigm. Such connectivity is dynamic, even over the course of minutes, and the development of tools for its analysis is an important challenge in neuroscience. We propose a novel data-driven technique to extract connectivity patterns from dynamic whole-brain networks of multiple subjects. Our technique is based on singular value decomposition and decomposes a collection of networks into linearly independent “eigennetworks” and associated time courses. To deal with the temporal redundancy of networks, we propose a novel subsampling method based on the standard deviation of the connectivity strength. We apply the proposed technique to dynamic resting-state networks of healthy subjects and multiple sclerosis patients, and show its potential to detect aberrant connectivity patterns in patients.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"115 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124588396","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信