2013 IEEE 10th International Symposium on Biomedical Imaging最新文献

筛选
英文 中文
Predicting lung tumor evolution during radiotherapy from PET images using a patient specific model 使用患者特异性模型从PET图像预测放射治疗期间肺肿瘤的演变
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556796
Hongmei Mi, C. Petitjean, S. Ruan, P. Vera, B. Dubray
{"title":"Predicting lung tumor evolution during radiotherapy from PET images using a patient specific model","authors":"Hongmei Mi, C. Petitjean, S. Ruan, P. Vera, B. Dubray","doi":"10.1109/ISBI.2013.6556796","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556796","url":null,"abstract":"We propose a patient-specific model based on PDE to predict the evolution of lung tumors during radiotherapy. The evolution of tumor cell densities is formulated by three terms: 1) advection describing the mobility, 2) reaction representing the proliferation modeled as Gompertz differential equation, and 3) treatment quanti tying the radiotherapeutic efficacy modeled as exponential function. As tumor cell density variation can be derived from PET images, the novel idea is to model the advection term by calculating 3D optical flow field from sequential images. To estimate patient-specific parameters, we carry out an optimization between the predicted and observed images, under a volume-dose model constraint. Threshold method is then used to define tumor contours and maximum standardized uptake values, based on the predicted tumor cell densities. We present the results obtained in 8 patients, where the predicted tumor contours are compared to those drawn by an expert.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"30 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128358616","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Loosely coupled level sets for retinal layer segmentation in optical coherence tomography 光学相干断层成像中视网膜层分割的松耦合水平集
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556648
J. Novosel, Koen A. Vermeer, G. Thepass, H. Lemij, L. Vliet
{"title":"Loosely coupled level sets for retinal layer segmentation in optical coherence tomography","authors":"J. Novosel, Koen A. Vermeer, G. Thepass, H. Lemij, L. Vliet","doi":"10.1109/ISBI.2013.6556648","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556648","url":null,"abstract":"This paper presents a novel method for the segmentation of layered structures that have a predefined order. Layers are jointly segmented by simultaneous detection of their interfaces. This is done by means of a level set approach based on Bayesian inference where the ordering of the layers is enforced via a novel level set coupling. The method was applied to in-vivo images of healthy human retinas acquired by optical coherence tomography (OCT). A quantitative comparison with manual annotations was used to estimate the method's accuracy, which showed very good agreement (mean absolute deviation (MAD) of 3.11-8.58 μm). The large errors were mainly due to differences in handling the vessels. Based on repeated OCT images of the same eye acquired on consecutive days, the reproducibility of manual and automated segmentations, expressed by the MAD of the RNFL thickness, were 10.97 μm and 7.68 μm.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"10 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128418243","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 19
Graph walks for classification of histopathological images 用于组织病理图像分类的图行走
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556677
Gulden Olgun, C. Sokmensuer, Cigdem Demir
{"title":"Graph walks for classification of histopathological images","authors":"Gulden Olgun, C. Sokmensuer, Cigdem Demir","doi":"10.1109/ISBI.2013.6556677","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556677","url":null,"abstract":"This paper reports a new structural approach for automated classification of histopathological tissue images. It has two main contributions: First, unlike previous structural approaches that use a single graph for representing a tissue image, it proposes to obtain a set of subgraphs through graph walking and use these subgraphs in representing the image. Second, it proposes to characterize subgraphs by directly using distribution of their edges, instead of employing conventional global graph features, and use these characterizations in classification. Our experiments on colon tissue images reveal that the proposed structural approach is effective to obtain high accuracies in tissue image classification.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"20 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130288552","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Compressed sensing HARDI via rotation-invariant concise dictionaries, flexible K-space undersampling, and multiscale spatial regularity 压缩感知HARDI通过旋转不变简洁字典,灵活的k空间欠采样和多尺度空间规则
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556399
Suyash P. Awate, E. D. Bella
{"title":"Compressed sensing HARDI via rotation-invariant concise dictionaries, flexible K-space undersampling, and multiscale spatial regularity","authors":"Suyash P. Awate, E. D. Bella","doi":"10.1109/ISBI.2013.6556399","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556399","url":null,"abstract":"Current methods to reduce acquisition time for high angular resolution diffusion imaging (HARDI) (i) employ large dictionaries where atoms explicitly model finitely-many tract orientations, limiting estimation accuracy of the true tract orientation, (ii) subsample gradient directions only, ignoring k-space undersampling for diffusion-weighted images, (iii) restrict to sparse models that use either frames or dictionaries, and (iv) enforce spatial regularity by penalizing total variation. This paper proposes rotation-invariant dictionaries, enabling a concise dictionary (few atoms representing key diffusion-signal types) by explicitly optimizing the rotation for each atom during sparse fitting. The proposed framework generalizes undersampling strategies to both k-space and gradient directions, thereby enabling a balanced undersampling of k-space over all directions. This paper combines frames and dictionaries for sparse modeling HARDI images. The frame model reduces the need for large intricate dictionaries and enforces spatial regularity over multiple scales. Results on simulated and clinical undersampled HARDI show improved reconstructions via the proposed framework.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130385500","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 20
Variational attenuation correction of two-view confocal microscopic recordings 双视角共聚焦显微记录的变分衰减校正
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556439
Thorsten Schmidt, J. Dürr, M. Keuper, T. Blein, K. Palme, O. Ronneberger
{"title":"Variational attenuation correction of two-view confocal microscopic recordings","authors":"Thorsten Schmidt, J. Dürr, M. Keuper, T. Blein, K. Palme, O. Ronneberger","doi":"10.1109/ISBI.2013.6556439","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556439","url":null,"abstract":"We present an approach to recover attenuation-free intensities of a thick sample, that is imaged by a standard confocal microscope from two views (top and bottom). A variational approach simultaneously estimates the local signal attenuation and the real attenuation-free intensity at each position. Compared to earlier work we introduce a refined image formation model, that models photo-bleaching and photon noise using Poisson image statistics. We examine the effects of different regularization methods on the absorption field (Tikhonov-Miller, Total Variation, and sparsity) and the benefit of a constrained optimization in comparison to an orthogonal subspace projection. We quantify the efficacy of the approach on synthetically generated samples, and show its general applicability on two real biological applications, namely the recordings of zebrafish embryos and Arabidopsis thaliana root tips.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131135649","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
A radiographic-based method for marginal bone loss measurement in dental implants 牙种植体边缘骨丢失测量的影像学方法
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556429
E. Veronese, M. Veronese, S. Sivolella, E. Grisan
{"title":"A radiographic-based method for marginal bone loss measurement in dental implants","authors":"E. Veronese, M. Veronese, S. Sivolella, E. Grisan","doi":"10.1109/ISBI.2013.6556429","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556429","url":null,"abstract":"Radiographic assessment of marginal bone loss is one of the most used criteria in longitudinal control of dental implant osseointegration. Accurate and reproducible results are difficult to obtain, due to considerable intra- and interoperator variability. In this work a semi-automatic approach to establish the degree of osseointegration of dental implants based on radiographic images is presented. The marginal bone loss around 47 implants in 16 patients were assessed. Computer-assisted results were compared with those provided manually by three expert graders. The method provides a mean inter-variability reduced of the 70% with respect to the manual measures. Limiting the analysis to the subset of implants characterized by a manual inter-variability lower than 25%, the automatic results are well correlated with the manual measures: estimating the marginal bone loss, the value of R2 ranges from 0.62 to 0.86; estimating the screws' axis length, the value of R2 is always above 0.99.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"35 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129247389","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Fiber orientation distribution from non-negative sparse recovery 非负稀疏恢复的纤维取向分布
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556460
Aurobrata Ghosh, Thinhinane Megherbi, Fatima Oulebsir-Boumghar, R. Deriche
{"title":"Fiber orientation distribution from non-negative sparse recovery","authors":"Aurobrata Ghosh, Thinhinane Megherbi, Fatima Oulebsir-Boumghar, R. Deriche","doi":"10.1109/ISBI.2013.6556460","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556460","url":null,"abstract":"We revisit the theory of spherical deconvolution and propose a new fiber orientation distribution (FOD) model that can efficiently reconstruct extremely narrow fiber-crossings from limited number of acquisitions. First, we show how to physically model fiber-orientations as rank-1 tensors. Then, we parameterize the FODs with tensors that are decomposable into non-negative sums of rank-1 tensors and finally, we propose a non-negative sparse recovery scheme to estimate FODs of any tensor order from limited acquisitions. Our method features three important advantages: (1) it estimates non-negative FODs, (2) it estimates the number of fiber-compartments, which need not be predefined and (3) it computes the fiber-directions directly, rendering maxima detection superfluous. We test for various SNRs on synthetic, phantom and real data and find our method accurate and robust to signal-noise: fibers crossing up to 23° are recovered from just 21 acquisitions. This opens new and exciting perspectives in diffusion MRI (dMRI), where our improved characterization of the FOD can be of great help for applications such as tractography.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"4 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129353337","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Cortex parcellation via diffusion data as prior knowledge for the MEG inverse problem 通过扩散数据作为先验知识对脑磁图逆问题进行皮层分割
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556644
A. Philippe, Maureen Clerc, T. Papadopoulo, R. Deriche
{"title":"Cortex parcellation via diffusion data as prior knowledge for the MEG inverse problem","authors":"A. Philippe, Maureen Clerc, T. Papadopoulo, R. Deriche","doi":"10.1109/ISBI.2013.6556644","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556644","url":null,"abstract":"In this paper, we present a new approach to the recovery of dipole magnitudes in a distributed source model for magnetoencephalographic (MEG) imaging. This method consists in introducing prior knowledge regarding the anatomical connectivity in the brain to this ill-posed inverse problem. Thus, we perform cortex parcellation via structural information coming from diffusion MRI (dMRI), the only non-invasive modality allowing to have access to the structure of the WM tissues. Then, we constrain, in the MEG inverse problem, sources in the same diffusion parcel to have close magnitude values. Results of our method on MEG simulations are presented and favorably compared with classical source reconstruction methods.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129389418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
An alternative method to classical beamforming for transverse oscillation images: Application to elastography 横向振荡图像的经典波束形成替代方法:在弹性成像中的应用
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556575
F. Varray, H. Liebgott
{"title":"An alternative method to classical beamforming for transverse oscillation images: Application to elastography","authors":"F. Varray, H. Liebgott","doi":"10.1109/ISBI.2013.6556575","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556575","url":null,"abstract":"Transverse oscillation techniques have shown their high potential for accurate and robust vector motion estimation for both flow and tissue. Unfortunately to form such images, it is necessary to modify the ultrasound scanner's beamformer. This paper proposes alternative strategies to create transverse oscillation images in order to estimate motions in ultrasound images. The proposed methods are based on 1) one dimensional convolution or filtering of the radio frequency images or 2) two dimensional convolution or filtering of the B-mode images. They are first evaluated on a single lateral motion case in simulations and experiments, and then in a quasi-static elastography situation. The results with our filtering/convolution approach are very similar to the ones obtained with TO images obtained by classical beamforming. The mean deviation between the classical TO beamforming and the proposed method is 5.5%, which validates that one direction filtering is an efficient way to simplify the creation of TO images.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"10 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128056571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 16
Anatomical landmark detection using multiple instance boosting with spatial regularization 基于空间正则化的多实例增强解剖地标检测
2013 IEEE 10th International Symposium on Biomedical Imaging Pub Date : 2013-04-07 DOI: 10.1109/ISBI.2013.6556451
P. Swoboda, David Liu, S. Zhou
{"title":"Anatomical landmark detection using multiple instance boosting with spatial regularization","authors":"P. Swoboda, David Liu, S. Zhou","doi":"10.1109/ISBI.2013.6556451","DOIUrl":"https://doi.org/10.1109/ISBI.2013.6556451","url":null,"abstract":"We propose a novel multiple instance boosting approach with spatial regularization for detecting anatomical landmark to alleviate the manual annotation burden and to address imprecise annotations. It features three contributions. The first is the introduction of soft max cost function for better handling the practical situation in object detection that most positive bags only contain very few true positives while including the ISR rule and AdaBoost as special examples. The second is to exploit for better detection the spatial context embedded in a medical image, specifically the grid arrangement of the training instances with strong correlation. This is in contrast with conventional methods that treat instances in a bag independently. The third is to encourage a concentrated detection response map so that the final detection result can be derived with more confidence. The latter two contributions are realized using total variation regularization. Experimentally the proposed approach achieves significantly better detection performance than state-of-the-art detection methods in detecting anatomical landmarks with few or even no annotations.","PeriodicalId":178011,"journal":{"name":"2013 IEEE 10th International Symposium on Biomedical Imaging","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125562911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:604180095
Book学术官方微信