Journal of Plant Biology最新文献_第2页

Five Beta-Expansin Genes Sharing Common Expression Patterns are Redundantly Involved in Pollen Tube Growth in Rice (Oryza sativa) 五个具有共同表达模式的 Beta-Expansin 基因冗余地参与了水稻（Oryza sativa）花粉管的生长

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-05-17 DOI: 10.1007/s12374-024-09429-5

Su-Kyoung Lee, Hae-Won Lee, Woo-Jong Hong, Eui-Jung Kim, Sunok Moon, Ki-Hong Jung

引用次数: 0

Jasmonic Acid Mediates Maize (Zea mays L.) Roots Response to Soil Nitrogen Heterogeneity 茉莉酸调节玉米（Zea mays L.）根系对土壤氮异质性的反应

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-05-06 DOI: 10.1007/s12374-024-09428-6

Shiyong Zhou, Xuejing Zi, Dongyun Rao, Kang Liu, Liang Yang, Peng Shen, Bozhi Wu, Feng Zhou

{"title":"Jasmonic Acid Mediates Maize (Zea mays L.) Roots Response to Soil Nitrogen Heterogeneity","authors":"Shiyong Zhou, Xuejing Zi, Dongyun Rao, Kang Liu, Liang Yang, Peng Shen, Bozhi Wu, Feng Zhou","doi":"10.1007/s12374-024-09428-6","DOIUrl":"https://doi.org/10.1007/s12374-024-09428-6","url":null,"abstract":"A heterogeneous distribution of nutrients in the soil always affects the development of crops. In this study, we investigated the molecular mechanisms underlying the formation of phenotypic differences between the high- and low-nitrogen side roots of maize in response to soil nitrogen heterogeneity using a multiomics approach. The transcriptome data show that 1147 differentially expressed genes (DEGs) were identified on the high- and low-nitrogen sides roots, with 791 down-regulated and 356 up-regulated expressions, respectively, which were concentrated mainly in the plant hormone signal transduction pathway and the plant mitogen-activated protein kinase(MAPK)signaling pathway. Metabolomics show that a total of 77 differentially accumulated metabolites (DAMs) were detected in the high- and low-nitrogen side roots, with 13 up-regulated and 64 dow-nregulated, respectively, and the analysis of the KEGG pathway showed that DAMs were mainly enriched in flavone and flavonol biosynthesis and the biosynthesis of secondary metabolites. The combined analysis shows that the jasmonic acid (JA) signaling pathway in plant hormone signal transduction was significantly different between the two sides of the roots. Jasmonoyl-L-isoleucine (JA-Ile) may be a key factor in the response of maize roots to soil nitrogen heterogeneity, and the transcription factors JAZ and MYC2 regulate this pathway. In summary, transcriptomics and metabolomics have improved our understanding of how nitrogen application patterns affect root development in agroecosystems and provide a scientific basis for precision fertilization for high crop productivity.","PeriodicalId":16762,"journal":{"name":"Journal of Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-05-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140887876","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Intrinsic Signaling Pathways and key Regulatory Factors of Stomatal Development 气孔发育的内在信号途径和关键调节因子

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-04-29 DOI: 10.1007/s12374-024-09427-7

Qingsong Jiao, Hongbao Bai, Ahmad Zada, Xueyun Hu

{"title":"Intrinsic Signaling Pathways and key Regulatory Factors of Stomatal Development","authors":"Qingsong Jiao, Hongbao Bai, Ahmad Zada, Xueyun Hu","doi":"10.1007/s12374-024-09427-7","DOIUrl":"https://doi.org/10.1007/s12374-024-09427-7","url":null,"abstract":"Stomata are small pores on the surface of plant leaves that play a critical role in regulating gas exchange and water loss. The development of stomata is a complex process regulated by a network of signaling pathways and regulatory factors. In this review, we discuss the major signaling pathways and regulatory factors involved in stomatal development, including the roles of the EPF ligands family, the TMM and ERECTA receptor complex, the MAPK cascade, and various bHLH transcription factors such as SPCH. The interconnections between these pathways and regulatory factors are also summarized, revealing a complex network of interactions that integrate signals from multiple sources. Although significant progress has been made in understanding stomatal development, there are still knowledge gaps. Future studies should focus on elucidating the precise processes of the interaction between regulatory factors and signaling pathways, investigating the function of epigenetic regulation in stomatal development, and understanding the impact of environmental cues on it. This review provides insights into the complex intricate network that underlies stomatal development.","PeriodicalId":16762,"journal":{"name":"Journal of Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140812442","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Investigating the Phi Use Efficiency of a NADP Utilizing Phosphite Dehydrogenase in Rice 研究水稻中亚磷酸脱氢酶对 NADP 的利用效率

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-04-16 DOI: 10.1007/s12374-024-09423-x

Dipanwita Datta, Mrinalini Manna, Hemangini Parmar, Sangeetha Karippadakam, Afreen Rashid, Sahil Mehta, Shambhu Krishan Lal, Ajay K. Venkatapuram, Jitender Singh, Malireddy K. Reddy, Srinivas Patnaik, V. Mohan M. Achary

{"title":"Investigating the Phi Use Efficiency of a NADP Utilizing Phosphite Dehydrogenase in Rice","authors":"Dipanwita Datta, Mrinalini Manna, Hemangini Parmar, Sangeetha Karippadakam, Afreen Rashid, Sahil Mehta, Shambhu Krishan Lal, Ajay K. Venkatapuram, Jitender Singh, Malireddy K. Reddy, Srinivas Patnaik, V. Mohan M. Achary","doi":"10.1007/s12374-024-09423-x","DOIUrl":"https://doi.org/10.1007/s12374-024-09423-x","url":null,"abstract":"Phosphite, a reduced form of phosphate, has been proposed to be a better source of phosphorus due to its high mobility in soil and can be used as an alternative fertilizer with herbicide for growing crops engineered with bacterial phosphite dehydrogenase protein from Pseudomonas stutzeri. This enzyme uses NAD as a cofactor and its overexpression could deplete the cellular NAD pool, creating pressure on other cellular biochemical reactions. To take advantage of both NAD and NADP, we mutated the native phosphite dehydrogenase gene for relaxed cofactor specificity and overexpressed it in rice plants. The engineered rice plants were found to metabolize phosphite efficiently. However, use of phosphite as a herbicide was not met by mutated phosphite dehydrogenase overexpressing plants as compared to the rice plants overexpressing wild type phosphite dehydrogenase. Therefore, we conclude that mutant phosphite dehydrogenase has potential industrial application for NADPH regeneration and its use for engineering crops for dual fertilization and weed control system is limited.","PeriodicalId":16762,"journal":{"name":"Journal of Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140562240","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

The Plasmodesmal Protein OsGER4 is Involved in Auxin Mediated Crown Root Development in Rice 质粒蛋白 OsGER4 参与了由叶绿素介导的水稻冠根发育过程

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-04-06 DOI: 10.1007/s12374-024-09424-w

Thi Trang Nguyen, The Dan Pham, Phat Tien Do, Kieu Thi Xuan Vo, Thi Van Anh Le, Tuan Anh Tran, Hoang Ha Chu, Jong-Seong Jeon, Huong Thi Mai To

{"title":"The Plasmodesmal Protein OsGER4 is Involved in Auxin Mediated Crown Root Development in Rice","authors":"Thi Trang Nguyen, The Dan Pham, Phat Tien Do, Kieu Thi Xuan Vo, Thi Van Anh Le, Tuan Anh Tran, Hoang Ha Chu, Jong-Seong Jeon, Huong Thi Mai To","doi":"10.1007/s12374-024-09424-w","DOIUrl":"https://doi.org/10.1007/s12374-024-09424-w","url":null,"abstract":"In rice (Oryza sativa L.), the root system plays different essential roles, from water and nutrient uptake to responding to environmental signals. The mechanisms underlying root development are complex and involve many phytohormones, of which auxin is the most important. This study investigates the involvement of OsGER4, a putative Germin-like protein, in auxin-mediated crown root development in rice. The expression study of OsGER4 in the crl1 mutant confirms that OsGER4 is connected to the CRL1 signaling pathway- a master regulator for crown root development. Transgenic rice carrying the promGER4::GUS reporter gene revealed that OsGER4 is mainly expressed in the initiation and emergence zone of the crown and lateral root, such as epidermal cell, vasculature, and primordia under auxin treatment condition. Moreover, fewer crown roots of osger4 knockout mutant lines than the wild type under auxin treatment suggests that OsGER4 might function as a regulator limiting auxin flux to root growth regions under stress conditions. Besides, protein localization experiments confirmed that OsGER4 localizes to plasmodesmata, which are intercellular channels that could facilitate auxin transport. Our findings suggest that OsGER4 might play a substantial role in regulating plasmodesmata conformation to regulate auxin flow resulting in crown root developmental in rice under stress conditions.","PeriodicalId":16762,"journal":{"name":"Journal of Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140562579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Significance of ABA Biosynthesis in Plant Adaptation to Drought Stress ABA 生物合成在植物适应干旱胁迫中的意义

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-04-05 DOI: 10.1007/s12374-024-09425-9

Shah Zareen, Akhtar Ali, Dae-Jin Yun

引用次数: 0

Characterization of ZmCesAs for Secondary Cell Wall Biosynthesis in Maize 玉米次生细胞壁生物合成 ZmCesAs 的特征

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-02-29 DOI: 10.1007/s12374-023-09420-6

引用次数: 0

Estimation on Individual-Level Carbon Sequestration Capacity of Understory Perennial Herbs 多年生草本植物林下个体碳封存能力估算

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-02-22 DOI: 10.1007/s12374-024-09422-y

Bo Eun Nam, Jeong-Min Kim, Seungki Lee, Youn Kyoung Son, Byoung-Hee Lee, Youngsung Joo

{"title":"Estimation on Individual-Level Carbon Sequestration Capacity of Understory Perennial Herbs","authors":"Bo Eun Nam, Jeong-Min Kim, Seungki Lee, Youn Kyoung Son, Byoung-Hee Lee, Youngsung Joo","doi":"10.1007/s12374-024-09422-y","DOIUrl":"https://doi.org/10.1007/s12374-024-09422-y","url":null,"abstract":"The carbon sequestration capacity of plants has been used as a nature-based solution to reduce carbon emissions. Perennial herbs potentially contribute to carbon sequestration by allocating carbon to belowground parts as well as trees. As individual-level estimations have mainly been carried out for tree species, individual-level carbon sequestration for understory perennial herb species is poorly understood. To estimate the below- and aboveground carbon sequestration capacity, ten perennial herb species were planted for field experiment. Individual carbon sequestration by biomass was calculated by measuring the aboveground- and estimating belowground biomass gain at harvest. We further measured non-destructive aboveground parameters, such as photosynthesis and leaf area, to estimate the belowground biomass. Four species (Aconitum jaluense Kom., Aquilegea oxysepala Trautv. & C.A.Mey., Disporum smilacinum A.Gray, and Polygonatum odoratum var. pluriflorum (Miq.) Ohwi) showed the positive belowground carbon sequestration level during the experimental period. Correlation analyses indicated that the aboveground biomass and leaf area at senescence stage could be used as non-destructive estimates of belowground carbon sequestration. The perennial herb species habitat suitability for use as additional carbon sinks in urban forests and for forest restoration should be assessed based on the increase in belowground biomass.","PeriodicalId":16762,"journal":{"name":"Journal of Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-02-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139919536","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

CAFRI-Arabidopsis: An Intuitive Web-Based Functional Redundancy Inspector in Arabidopsis CAFRI-Arabidopsis：基于网络的拟南芥功能冗余直观检查器

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-02-21 DOI: 10.1007/s12374-024-09421-z

Woo-Jong Hong, Hongman Moon, Chanseok Shin, Ki-Hong Jung

{"title":"CAFRI-Arabidopsis: An Intuitive Web-Based Functional Redundancy Inspector in Arabidopsis","authors":"Woo-Jong Hong, Hongman Moon, Chanseok Shin, Ki-Hong Jung","doi":"10.1007/s12374-024-09421-z","DOIUrl":"https://doi.org/10.1007/s12374-024-09421-z","url":null,"abstract":"Plants, being sessile organisms, are exposed to a diverse range of environmental challenge. Over time, they have evolved various mechanisms to withstand these harsh conditions, often acquiring functional redundancy in genes with similar sequence. This genetic redundancy, while advantageous for the plant's adaptability, poses challenges in functional genomics research. To address this issue, we developed CAFRI-Arabidopsis (https://cafri.khu.ac.kr/arabidopsis/), a web resource designed to intuitively explore functional redundancy in Arabidopsis, a model plant that has significantly contributed to understanding the morphological and physiological traits. Our tool combines transcriptome data with Pfam-based phylogenetic data across 33 tissues/organs to visualize and quantify functional redundancy. Its effectiveness has been validated through a comprehensive literature review. User-friendly in design, CAFRI-Arabidopsis allows users to quickly generate results by inputting the desired locus. We anticipate that this tool will be invaluable in uncovering new insights in plant developmental and physiological studies that have been previously obscured due to functional redundancy.","PeriodicalId":16762,"journal":{"name":"Journal of Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139919367","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Metabolic Perspective on Soybean and Its Potential Impacts on Digital Breeding: An Updated Overview 大豆的代谢观点及其对数字化育种的潜在影响：最新概述

IF 2.9 4区生物学

Journal of Plant Biology Pub Date : 2024-01-22 DOI: 10.1007/s12374-023-09419-z

{"title":"Metabolic Perspective on Soybean and Its Potential Impacts on Digital Breeding: An Updated Overview","authors":"","doi":"10.1007/s12374-023-09419-z","DOIUrl":"https://doi.org/10.1007/s12374-023-09419-z","url":null,"abstract":"<h3>Abstract</h3> Owing to its high nutritional content of protein, oil, fatty acids, and sugars, soybean (Glycine max L.), one of the most significant legume crops, is utilized worldwide as food, feed, and fuel for daily life applications. The seeds, leaves, branches, roots, and pods of soybean contain essential bioactive compounds, including flavonoids, isoflavonoids, and other specialized metabolites, that play important roles in plant growth, development, and stress responses. In recent years, significant progress has been made in increasing soybean production. Therefore, here, we summarize the most recent breakthroughs in metabolite profiling and bioactive compound identification in soybeans to inform future digital breeding approaches. In addition to classical metabolite investigations, the discovery of metabolites involved in the dehydration response was made through a recent study that examined the regulatory network of metabolites and plant hormone genes. This review aimed to provide a metabolic perspective on soybeans that will benefit soybean production. The findings of this review will facilitate the development of novel soybean cultivars containing highly valuable metabolites for digital breeding.","PeriodicalId":16762,"journal":{"name":"Journal of Plant Biology","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-01-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139515248","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0