Environmental Microbiology Reports最新文献

筛选
英文 中文
Seed or soil: Tracing back the plant mycobiota primary sources 种子还是土壤追溯植物真菌生物群的主要来源。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13301
Liam Laurent-Webb, Kenji Maurice, Benoît Perez-Lamarque, Amélia Bourceret, Marc Ducousso, Marc-André Selosse
{"title":"Seed or soil: Tracing back the plant mycobiota primary sources","authors":"Liam Laurent-Webb,&nbsp;Kenji Maurice,&nbsp;Benoît Perez-Lamarque,&nbsp;Amélia Bourceret,&nbsp;Marc Ducousso,&nbsp;Marc-André Selosse","doi":"10.1111/1758-2229.13301","DOIUrl":"10.1111/1758-2229.13301","url":null,"abstract":"<p>Plants host diverse communities of fungi (the mycobiota), playing crucial roles in their development. The assembly processes of the mycobiota, however, remain poorly understood, in particular, whether it is transmitted by parents through the seeds (vertical transmission) or recruited in the environment (horizontal transmission). Here we attempt to quantify the relative contributions of horizontal and vertical transmission in the mycobiota assembly of a desert shrub, <i>Haloxylon salicornicum</i>, by comparing the mycobiota of in situ bulk soil and seeds to that of (i) in situ adult individuals and (ii) in vitro-germinated seedlings in soil collected in situ. We show that the mycobiota are partially vertically transmitted through the seeds to seedlings, whereas bulk soil has a limited contribution to the seedling's mycobiota. In adults, root and bulk soil mycobiota tend to resemble each other, suggesting a compositional turnover in plant mycobiota during plant development due to horizontal transmission. Thus, the mycobiota are transmitted both horizontally and vertically depending on the plant tissue and developmental stage. Understanding the respective contribution of these transmission pathways to the plant mycobiota is fundamental to deciphering potential coevolutionary processes between plants and fungi. Our findings particularly emphasize the importance of vertical transmission in desert ecosystems.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194045/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454144","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The microbiome of the lichen Lobaria pulmonaria varies according to climate on a subcontinental scale 地衣 Lobaria pulmonaria 的微生物组随亚大陆范围的气候而变化。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13289
Anteneh Tamirat Bogale, Maria Braun, Jörg Bernhardt, Daniela Zühlke, Ulf Schiefelbein, Manuela Bog, Christoph Scheidegger, Veronika Zengerer, Dörte Becher, Martin Grube, Katharina Riedel, Mia M. Bengtsson
{"title":"The microbiome of the lichen Lobaria pulmonaria varies according to climate on a subcontinental scale","authors":"Anteneh Tamirat Bogale,&nbsp;Maria Braun,&nbsp;Jörg Bernhardt,&nbsp;Daniela Zühlke,&nbsp;Ulf Schiefelbein,&nbsp;Manuela Bog,&nbsp;Christoph Scheidegger,&nbsp;Veronika Zengerer,&nbsp;Dörte Becher,&nbsp;Martin Grube,&nbsp;Katharina Riedel,&nbsp;Mia M. Bengtsson","doi":"10.1111/1758-2229.13289","DOIUrl":"10.1111/1758-2229.13289","url":null,"abstract":"<p>The <i>Lobaria pulmonaria</i> holobiont comprises algal, fungal, cyanobacterial and bacterial components. We investigated <i>L. pulmonaria's</i> bacterial microbiome in the adaptation of this ecologically sensitive lichen species to diverse climatic conditions. Our central hypothesis posited that microbiome composition and functionality aligns with subcontinental-scale (a stretch of ~1100 km) climatic parameters related to temperature and precipitation. We also tested the impact of short-term weather dynamics, sampling season and algal/fungal genotypes on microbiome variation. Metaproteomics provided insights into compositional and functional changes within the microbiome. Climatic variables explained 41.64% of microbiome variation, surpassing the combined influence of local weather and sampling season at 31.63%. Notably, annual mean temperature and temperature seasonality emerged as significant climatic drivers. Microbiome composition correlated with algal, not fungal genotype, suggesting similar environmental recruitment for the algal partner and microbiome. Differential abundance analyses revealed distinct protein compositions in Sub-Atlantic Lowland and Alpine regions, indicating differential microbiome responses to contrasting environmental/climatic conditions. Proteins involved in oxidative and cellular stress were notably different. Our findings highlight microbiome plasticity in adapting to stable climates, with limited responsiveness to short-term fluctuations, offering new insights into climate adaptation in lichen symbiosis.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194104/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454145","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Seasonal variation in metabolic profiles and microbial communities in a subarctic ore processing plant 亚北极矿石加工厂的代谢特征和微生物群落的季节性变化。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13284
Malin Bomberg, Hanna Miettinen, Päivi Kinnunen
{"title":"Seasonal variation in metabolic profiles and microbial communities in a subarctic ore processing plant","authors":"Malin Bomberg,&nbsp;Hanna Miettinen,&nbsp;Päivi Kinnunen","doi":"10.1111/1758-2229.13284","DOIUrl":"10.1111/1758-2229.13284","url":null,"abstract":"<p>The mining industry strives to reduce its water footprint by recycling water in ore processing. This leads to build-up of ions, flotation chemicals and microbial biomass, which may affect the process. The Boliden Kevitsa mine in Northern Finland is exposed to seasonal change and recycles up to 90% of the process water. We studied the variation in size, composition and putative functions of microbial communities in summer and winter in the ore processing plant. The raw water, Cu and Ni thickener overflow waters had statistically significantly higher bacterial numbers in winter compared to summer, and specific summer and winter communities were identified. Metagenomic analysis indicated that Cu and Hg resistance genes, sulphate/thiosulphate, molybdate, iron(III) and zinc ABC transporters, nitrate reduction, denitrification, thiosulphate oxidation and methylotrophy were more common in winter than in summer. Raw water drawn from the nearby river did not affect the microbial communities in the process samples, indicating that the microbial communities and metabolic capacities develop within the process over time in response to the conditions in the processing plant, water chemistry, used chemicals, ore properties and seasonal variation. We propose that the microbial community structures are unique to the Boliden Kevitsa mine and processing plant.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194043/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diversity of marine bacteria growing on leachates from virgin and weathered plastic: Insights into potential degraders 原生塑料和风化塑料浸出物上生长的海洋细菌的多样性:对潜在降解者的启示。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13305
Cristina Romera-Castillo, Stéphanie Birnstiel, Marta Sebastián
{"title":"Diversity of marine bacteria growing on leachates from virgin and weathered plastic: Insights into potential degraders","authors":"Cristina Romera-Castillo,&nbsp;Stéphanie Birnstiel,&nbsp;Marta Sebastián","doi":"10.1111/1758-2229.13305","DOIUrl":"10.1111/1758-2229.13305","url":null,"abstract":"<p>Plastic debris in the ocean releases chemical compounds that can be toxic to marine fauna. It was recently found that some marine bacteria can degrade such leachates, but information on the diversity of these bacteria is mostly lacking. In this study, we analysed the bacterial diversity growing on leachates from new low-density polyethylene (LDPE) and a mix of naturally weathered plastic, collected from beach sand. We used a combination of Catalysed Reporter Deposition-Fluorescence In Situ Hybridization (CARD-FISH), BioOrthogonal Non-Canonical Amino acid Tagging (BONCAT), and 16S rRNA gene amplicon sequencing to analyse bacterioplankton-groups specific activity responses and the identity of the responsive taxa to plastic leachates produced under irradiated and non-irradiated conditions. We found that some generalist taxa responded to all leachates, most of them belonging to the Alteromonadales, Oceanospirillales, Nitrosococcales, Rhodobacterales, and Sphingomonadales orders. However, there were also non-generalist taxa responding to specific irradiated and non-irradiated leachates. Our results provide information about bacterial taxa that could be potentially used to degrade the chemicals released during plastic degradation into seawater contributing to its bioremediation.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194452/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454137","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Comparative resistomics analysis of multidrug-resistant Chryseobacteria 耐多药金色葡萄球菌的抗药性组学比较分析。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13288
Dung Ngoc Pham, Mengyan Li
{"title":"Comparative resistomics analysis of multidrug-resistant Chryseobacteria","authors":"Dung Ngoc Pham,&nbsp;Mengyan Li","doi":"10.1111/1758-2229.13288","DOIUrl":"10.1111/1758-2229.13288","url":null,"abstract":"<p><i>Chryseobacteria</i> consists of important human pathogens that can cause a myriad of nosocomial infections. We isolated four multidrug-resistant <i>Chryseobacterium</i> bacteria from activated sludge collected at domestic wastewater treatment facilities in the New York Metropolitan area. Their genomes were sequenced with Nanopore technology and used for a comprehensive resistomics comparison with 211 <i>Chryseobacterium</i> genomes available in the public databases. A majority of <i>Chryseobacteria</i> harbor 3 or more antibiotic resistance genes (ARGs) with the potential to confer resistance to at least two types of commonly prescribed antimicrobials. The most abundant ARGs, including β-lactam class A (<i>blaCGA-1</i> and <i>blaCIA</i>) and class B (<i>blaCGB-1</i> and <i>blaIND</i>) and aminoglycoside (<i>ranA</i> and <i>ranB</i>), are considered potentially intrinsic in <i>Chryseobacteria</i>. Notably, we reported a new resistance cluster consisting of a chloramphenicol acetyltransferase gene <i>catB11</i>, a tetracycline resistance gene <i>tetX</i>, and two mobile genetic elements (MGEs), <i>IS91</i> family transposase and <i>XerD</i> recombinase. Both <i>catB11</i> and <i>tetX</i> are statistically enriched in clinical isolates as compared to those with environmental origins. In addition, two other ARGs encoding aminoglycoside adenylyltransferase (<i>aadS</i>) and the small multidrug resistance pump (<i>abeS</i>), respectively, are found co-located with MGEs encoding recombinases (e.g., <i>RecA</i> and <i>XerD</i>) or transposases, suggesting their high transmissibility among <i>Chryseobacteria</i> and across the <i>Bacteroidota</i> phylum, particularly those with high pathogenicity. High resistance to different classes of β-lactam, as well as other commonly used antimicrobials (i.e., kanamycin, gentamicin, and chloramphenicol), was confirmed and assessed using our isolates to determine their minimum inhibitory concentrations. Collectively, though the majority of ARGs in <i>Chryseobacteria</i> are intrinsic, the discovery of a new resistance cluster and the co-existence of several ARGs and MGEs corroborate interspecies and intergenera transfer, which may accelerate their dissemination in clinical environments and complicate efforts to combat bacterial infections.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194056/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454136","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evidence of a putative CO2 delivery system to the chromatophore in the photosynthetic amoeba Paulinella 光合阿米巴保利内氏虫色球的假定二氧化碳输送系统的证据。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13304
Arwa Gabr, Timothy G. Stephens, John R. Reinfelder, Pinky Liau, Victoria Calatrava, Arthur R. Grossman, Debashish Bhattacharya
{"title":"Evidence of a putative CO2 delivery system to the chromatophore in the photosynthetic amoeba Paulinella","authors":"Arwa Gabr,&nbsp;Timothy G. Stephens,&nbsp;John R. Reinfelder,&nbsp;Pinky Liau,&nbsp;Victoria Calatrava,&nbsp;Arthur R. Grossman,&nbsp;Debashish Bhattacharya","doi":"10.1111/1758-2229.13304","DOIUrl":"10.1111/1758-2229.13304","url":null,"abstract":"<p>The photosynthetic amoeba, <i>Paulinella</i> provides a recent (ca. 120 Mya) example of primary plastid endosymbiosis. Given the extensive data demonstrating host lineage-driven endosymbiont integration, we analysed nuclear genome and transcriptome data to investigate mechanisms that may have evolved in <i>Paulinella micropora</i> KR01 (hereinafter, KR01) to maintain photosynthetic function in the novel organelle, the chromatophore. The chromatophore is of α-cyanobacterial provenance and has undergone massive gene loss due to Muller's ratchet, but still retains genes that encode the ancestral α-carboxysome and the shell carbonic anhydrase, two critical components of the biophysical CO<sub>2</sub> concentrating mechanism (CCM) in cyanobacteria. We identified KR01 nuclear genes potentially involved in the CCM that arose via duplication and divergence and are upregulated in response to high light and downregulated under elevated CO<sub>2</sub>. We speculate that these genes may comprise a novel CO<sub>2</sub> delivery system (i.e., a biochemical CCM) to promote the turnover of the RuBisCO carboxylation reaction and counteract photorespiration. We posit that KR01 has an inefficient photorespiratory system that cannot fully recycle the C<sub>2</sub> product of RuBisCO oxygenation back to the Calvin-Benson cycle. Nonetheless, both these systems appear to be sufficient to allow <i>Paulinella</i> to persist in environments dominated by faster-growing phototrophs.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194058/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454138","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Fungi rather than bacteria drive early mass loss from fungal necromass regardless of particle size 无论颗粒大小如何,真菌而非细菌都会导致真菌坏死物的早期质量损失。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13280
Eduardo Pérez-Pazos, Katilyn V. Beidler, Achala Narayanan, Briana H. Beatty, François Maillard, Alexandra Bancos, Katherine A. Heckman, Peter G. Kennedy
{"title":"Fungi rather than bacteria drive early mass loss from fungal necromass regardless of particle size","authors":"Eduardo Pérez-Pazos,&nbsp;Katilyn V. Beidler,&nbsp;Achala Narayanan,&nbsp;Briana H. Beatty,&nbsp;François Maillard,&nbsp;Alexandra Bancos,&nbsp;Katherine A. Heckman,&nbsp;Peter G. Kennedy","doi":"10.1111/1758-2229.13280","DOIUrl":"10.1111/1758-2229.13280","url":null,"abstract":"<p>Microbial necromass is increasingly recognized as an important fast-cycling component of the long-term carbon present in soils. To better understand how fungi and bacteria individually contribute to the decomposition of fungal necromass, three particle sizes (&gt;500, 250–500, and &lt;250 μm) of <i>Hyaloscypha bicolor</i> necromass were incubated in laboratory microcosms inoculated with individual strains of two fungi and two bacteria. Decomposition was assessed after 15 and 28 days via necromass loss, microbial respiration, and changes in necromass pH, water content, and chemistry. To examine how fungal–bacterial interactions impact microbial growth on necromass, single and paired cultures of bacteria and fungi were grown in microplates containing necromass-infused media. Microbial growth was measured after 5 days through quantitative PCR. Regardless of particle size, necromass colonized by fungi had higher mass loss and respiration than both bacteria and uninoculated controls. Fungal colonization increased necromass pH, water content, and altered chemistry, while necromass colonized by bacteria remained mostly unaltered. Bacteria grew significantly more when co-cultured with a fungus, while fungal growth was not significantly affected by bacteria. Collectively, our results suggest that fungi act as key early decomposers of fungal necromass and that bacteria may require the presence of fungi to actively participate in necromass decomposition.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194057/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Kinetics and pathways of sub-lithic microbial community (hypolithon) development 石下微生物群落(下石)发展的动力学和途径。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13290
Jason Bosch, Pedro H. Lebre, Eugene Marais, Gillian Maggs-Kölling, Don A. Cowan
{"title":"Kinetics and pathways of sub-lithic microbial community (hypolithon) development","authors":"Jason Bosch,&nbsp;Pedro H. Lebre,&nbsp;Eugene Marais,&nbsp;Gillian Maggs-Kölling,&nbsp;Don A. Cowan","doi":"10.1111/1758-2229.13290","DOIUrl":"10.1111/1758-2229.13290","url":null,"abstract":"<p>Type I hypolithons are microbial communities dominated by Cyanobacteria. They adhere to the underside of semi-translucent rocks in desert pavements, providing them with a refuge from the harsh abiotic stresses found on the desert soil surface. Despite their crucial role in soil nutrient cycling, our understanding of their growth rates and community development pathways remains limited. This study aimed to quantify the dynamics of hypolithon formation in the pavements of the Namib Desert. We established replicate arrays of sterile rock tiles with varying light transmission in two areas of the Namib Desert, each with different annual precipitation regimes. These were sampled annually over 7 years, and the samples were analysed using eDNA extraction and 16S rRNA gene amplicon sequencing. Our findings revealed that in the zone with higher precipitation, hypolithon formation became evident in semi-translucent rocks 3 years after the arrays were set up. This coincided with a Cyanobacterial ‘bloom’ in the adherent microbial community in the third year. In contrast, no visible hypolithon formation was observed at the array set up in the hyper-arid zone. This study provides the first quantitative evidence of the kinetics of hypolithon development in hot desert environments, suggesting that development rates are strongly influenced by precipitation regimes.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194044/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Metagenomic airborne resistome from urban hot spots through the One Health lens 通过 "一个健康 "视角观察城市热点地区空气中的抗药性元基因组。
IF 3.6 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-23 DOI: 10.1111/1758-2229.13306
Lucia Maestre-Carballa, Vicente Navarro-López, Manuel Martinez-Garcia
{"title":"Metagenomic airborne resistome from urban hot spots through the One Health lens","authors":"Lucia Maestre-Carballa,&nbsp;Vicente Navarro-López,&nbsp;Manuel Martinez-Garcia","doi":"10.1111/1758-2229.13306","DOIUrl":"10.1111/1758-2229.13306","url":null,"abstract":"<p>Human activities are a significant contributor to the spread of antibiotic resistance genes (ARGs), which pose a serious threat to human health. These ARGs can be transmitted through various pathways, including air, within the context of One Health. This study used metagenomics to monitor the resistomes in urban air from two critical locations: a wastewater treatment plant and a hospital, both indoor and outdoor. The presence of cell-like structures was confirmed through fluorescence microscopy. The metagenomic analysis revealed a wide variety of ARGs and a high diversity of antibiotic-resistant bacteria in the airborne particles collected. The wastewater treatment plant showed higher relative abundances with 32 ARG hits per Gb and m<sup>3</sup>, followed by the main entrance of the hospital (indoor) with ≈5 ARG hits per Gb and m<sup>3</sup>. The hospital entrance exhibited the highest ARG richness, with a total of 152 different ARGs classified into nine categories of antibiotic resistance. Common commensal and pathogenic bacteria carrying ARGs, such as <i>Moraxella</i>, <i>Staphylococcus</i> and <i>Micrococcus</i>, were detected in the indoor airborne particles of the hospital. Interestingly, no ARGs were shared among all the samples analysed, indicating a highly variable dynamic of airborne resistomes. Furthermore, the study found no ARGs in the airborne viral fractions analysed, suggesting that airborne viruses play a negligible role in the dissemination of ARGs.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.6,"publicationDate":"2024-06-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11194455/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141454142","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Bacterial community and cyanotoxin gene distribution of the Winam Gulf, Lake Victoria, Kenya 肯尼亚维多利亚湖维纳姆湾的细菌群落和蓝藻毒素基因分布。
IF 3.3 4区 生物学
Environmental Microbiology Reports Pub Date : 2024-06-17 DOI: 10.1111/1758-2229.13297
Katelyn M. Brown, Katelyn B. Barker, Ryan S. Wagner, Christopher S. Ward, Lewis Sitoki, James Njiru, Reuben Omondi, James Achiya, Albert Getabu, R. Michael McKay, George S. Bullerjahn, the NSF-IRES Lake Victoria Research Consortium
{"title":"Bacterial community and cyanotoxin gene distribution of the Winam Gulf, Lake Victoria, Kenya","authors":"Katelyn M. Brown,&nbsp;Katelyn B. Barker,&nbsp;Ryan S. Wagner,&nbsp;Christopher S. Ward,&nbsp;Lewis Sitoki,&nbsp;James Njiru,&nbsp;Reuben Omondi,&nbsp;James Achiya,&nbsp;Albert Getabu,&nbsp;R. Michael McKay,&nbsp;George S. Bullerjahn,&nbsp;the NSF-IRES Lake Victoria Research Consortium","doi":"10.1111/1758-2229.13297","DOIUrl":"10.1111/1758-2229.13297","url":null,"abstract":"<p>The Winam Gulf (Kenya) is frequently impaired by cyanobacterial harmful algal blooms (cHABs) due to inadequate wastewater treatment and excess agricultural nutrient input. While phytoplankton in Lake Victoria have been characterized using morphological criteria, our aim is to identify potential toxin-producing cyanobacteria using molecular approaches. The Gulf was sampled over two successive summer seasons, and 16S and 18S ribosomal RNA gene sequencing was performed. Additionally, key genes involved in production of cyanotoxins were examined by quantitative PCR. Bacterial communities were spatially variable, forming distinct clusters in line with regions of the Gulf. Taxa associated with diazotrophy were dominant near Homa Bay. On the eastern side, samples exhibited elevated <i>cyrA</i> abundances, indicating genetic capability of cylindrospermopsin synthesis. Indeed, near the Nyando River mouth in 2022, <i>cyrA</i> exceeded 10 million copies L<sup>−1</sup> where there were more than 6000 <i>Cylindrospermopsis</i> spp. cells mL<sup>−1</sup>. In contrast, the southwestern region had elevated <i>mcyE</i> gene (microcystin synthesis) detections near Homa Bay where <i>Microcystis</i> and <i>Dolichospermum</i> spp. were observed. These findings show that within a relatively small embayment, composition and toxin synthesis potential of cHABs can vary dramatically. This underscores the need for multifaceted management approaches and frequent cyanotoxin monitoring to reduce human health impacts.</p>","PeriodicalId":163,"journal":{"name":"Environmental Microbiology Reports","volume":"16 3","pages":""},"PeriodicalIF":3.3,"publicationDate":"2024-06-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/1758-2229.13297","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141416968","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信