{"title":"Subspace Clustering of DNA Microarray Data: Theory, Evaluation, and Applications","authors":"A. Tchagang, Fazel Famili, Youlian Pan","doi":"10.4018/IJCMAM.2014070101","DOIUrl":"https://doi.org/10.4018/IJCMAM.2014070101","url":null,"abstract":"Identification of biological significant subspace clusters biclusters and triclusters of genes from microarray experimental data is a very daunting task that emerged, especially with the development of high throughput technologies. Several methods and applications of subspace clustering biclustering and triclustering in DNA microarray data analysis have been developed in recent years. Various computational and evaluation methods based on diverse principles were introduced to identify new similarities among genes. This review discusses and compares these methods, highlights their mathematical principles, and provides insight into the applications to solve biological problems.","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"21 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134633947","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Decision Support for Mental Health: Towards the Information-based Psychiatry","authors":"J. Kalina, J. Zvárová","doi":"10.4018/IJCMAM.2014070102","DOIUrl":"https://doi.org/10.4018/IJCMAM.2014070102","url":null,"abstract":"Decision support systems represent an important tool offering assistance with the decision making process in a variety of applications. This paper starts with recalling the basic principles and structure of decision support systems in medicine from a general perspective. Their effect in terms of both potential and limitations for finding the diagnosis, prognosis and therapy are overviewed from the points of view of health care effectiveness and patient safety. The authors are particularly interested in the specialty field of psychiatry. They discuss its specific challenges and analyze the slower penetration of telemedicine tools to psychiatry compared to other clinical fields. Finally, they claim that the development of decision support systems play a key role in the development of the concept of information-based medicine in general as well as to the particular context of information-based psychiatry.","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127556695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Development of Stress Management System for Prevention of a Mental Disease using Smart Finger Plethysmogram Measurement","authors":"Hidehiko Hayashi, Akinori Minazuki","doi":"10.4018/IJCMAM.2014070103","DOIUrl":"https://doi.org/10.4018/IJCMAM.2014070103","url":null,"abstract":"In this modern society, with its multitude of stressors that people encounter on a daily basis, a characteristic of mental disorders is that there is a risk of developing them at the unconscious level, and even if the patient were to detect the condition, they are difficult to treat. Furthermore, while there are tests that evaluate the level of stress, these tests still have many elements. Therefore, it is extremely important to be able to objectively assess ones stress levels, as well as to raise awareness of and pay attention to internal signals in order to control the level of risk, to create a mechanism which provides medical help. Thus, this study aims to visualize the internal signals through the heart rate which is affected by stress, develop a system to provide assistance in returning stress to normal levels, and assisting in helping patients manage their own risk levels.","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"10 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-07-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128422039","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Technique to Exploit Free-Form Notes to Predict Customer Churn","authors":"Gregory W. Ramsey, S. Bapna","doi":"10.4018/ijcmam.2014010101","DOIUrl":"https://doi.org/10.4018/ijcmam.2014010101","url":null,"abstract":"As healthcare costs rise, hospitals are seeking ways to improve operations. This paper examines the usefulness of free-form notes to solve a classification problem commonly associated with customer churn. The authors show that classifiers which incorporate free-form notes, using natural language processing techniques, are up to 9% more accurate than classifiers that are solely developed using structured data. The authors suggest that hospitals and chronic disease management clinics can use structured data and free-form notes from electronic health records to predict which patients are likely to cease receiving care from their facilities. Classification tools for predicting patient churn are of interest to hospital administrators; such information can aid in resource planning and facilitate smoother handoffs between care providers.","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"24 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133159847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The Value of Quantitative EEG Measures in the Early Diagnosis of Alzheimer's Disease","authors":"Hideaki Tanaka","doi":"10.4018/ijcmam.2012100101","DOIUrl":"https://doi.org/10.4018/ijcmam.2012100101","url":null,"abstract":"There is growing interest in the discovery of clinically useful, robust biomarkers for Alzheimer’s disease (AD) and pre-AD; the ability to accurately diagnose AD or to predict conversion from a preclinical state to AD would aid in both prevention and early intervention. This study aimed to evaluate the usefulness of a statistical assessment of cortical activity using electroencephalograms (EEGs) with normative data and the ability of such an assessment to contribute to the diagnosis of AD. 15 patients with AD and 8 patients with mild cognitive impairment (MCI) were studied. Eyes-closed resting EEGs were digitally recorded at 200 Hz from 20 electrodes placed according to the international 10/20 system on the scalp, and 20 artifact-free EEG epochs lasting 2.56 ms were selected. Each EEG epoch was down-sampled to 100 Hz and matched to the normal data sets. The selected EEGs from each subject were analyzed by standardized Low Resolution Electromagnetic Tomography (sLORETA) and statistically compared with the age-matched normal data sets at all frequencies. This procedure resulted in cortical z values for each EEG frequency with 0.39 Hz frequency resolution for each subject. Some of the AD and MCI patients presented a peak of negative z value around 20 Hz, revealing hypoactivity of the parahippocampal gyrus and the insula in the sLORETA cortical image. In addition, severe cases of AD showed decreased parietal activation. These results were in agreement with evidence from statistical neuroimaging using MRI/SPECT. Submission of normal EEG data sets to sLORETA might be useful for the detection of diagnostic and predictive markers of AD and MCI in individual patients. The Value of Quantitative EEG Measures in the Early Diagnosis of Alzheimer’s Disease","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121790028","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Visual Gnosis and Face Perception","authors":"S. Tobimatsu","doi":"10.4018/ijcmam.2012100102","DOIUrl":"https://doi.org/10.4018/ijcmam.2012100102","url":null,"abstract":"There are two major parallel pathways in humans: the parvocellular (P) and magnocellular (M) pathways. The former has excellent spatial resolution with color selectivity, while the latter shows excellent temporal resolution with high contrast sensitivity. Visual stimuli should be tailored to answer specific clinical and/or research questions. This chapter examines the neural mechanisms of face perception using event-related potentials (ERPs). Face stimuli of different spatial frequencies were used to investigate how low-spatial-frequency (LSF) and high-spatial-frequency (HSF) components of the face contribute to the identification and recognition of the face and facial expressions. The P100 component in the occipital area (Oz), the N170 in the posterior temporal region (T5/T6) and late components peaking at 270-390 ms (T5/T6) were analyzed. LSF enhanced P100, while N170 was augmented by HSF irrespective of facial expressions. This suggested that LSF is important for global processing of facial expressions, whereas HSF handles featural processing. There were significant amplitude differences between positive and negative LSF facial expressions in the early time windows of 270-310 ms. Subsequently, the amplitudes among negative HSF facial expressions differed significantly in the later time windows of 330–390 ms. Discrimination between positive and negative facial expressions precedes discrimination among different negative expressions in a sequential manner based on parallel visual channels. Interestingly, patients with schizophrenia showed decreased spatial frequency sensitivities for face processing. Taken together, the spatially filtered face images are useful for exploring face perception and recognition.","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"65 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131030045","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A New Mechanical Algorithm for Calculating the Amplitude Equation of the Reaction-Diffusion Systems","authors":"Houye Liu, Weiming Wang","doi":"10.4018/ijcmam.2012100103","DOIUrl":"https://doi.org/10.4018/ijcmam.2012100103","url":null,"abstract":"Amplitude equation may be used to study pattern formatio. In this article, the authors establish a new mechanical algorithm AE_Hopf for calculating the amplitude equation near Hopf bifurcation based on the method of normal form approach in Maple. The normal form approach needs a large number of variables and intricate calculations. As a result, deriving the amplitude equation from diffusion-reaction is a difficult task. Making use of our mechanical algorithm, we derived the amplitude equations from several biology and physics models. The results indicate that the algorithm is easy to apply and effective. This algorithm may be useful for learning the dynamics of pattern formation of reaction-diffusion systems in future studies. A New Mechanical Algorithm for Calculating the Amplitude Equation of the ReactionDiffusion Systems","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"98 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"114200275","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A Multiscale Computational Model of Chemotactic Axon Guidance","authors":"G. Aletti, P. Causin, G. Naldi, M. Semplice","doi":"10.4018/ijcmam.2012100105","DOIUrl":"https://doi.org/10.4018/ijcmam.2012100105","url":null,"abstract":"In the development of the nervous system, the migration of neurons driven by chemotactic cues has been known since a long time to play a key role. In this mechanism, the axonal projections of neurons detect very small differences in extracellular ligand concentration across the tiny section of their distal part, the growth cone. The internal transduction of the signal performed by the growth cone leads to cytoskeleton rearrangement and biased cell motility. A mathematical model of neuron migration provides hints of the nature of this process, which is only partially known to biologists and is characterized by a complex coupling of microscopic and macroscopic phenomena. This chapter focuses on the tight connection between growth cone directional sensing as the result of the information collected by several transmembrane receptors, a microscopic phenomenon, and its motility, a macroscopic outcome. The biophysical hypothesis investigated is the role played by the biased re-localization of ligand-bound receptors on the membrane, actively convected by growing microtubules. The results of the numerical simulations quantify the positive feedback exerted by the receptor redistribution, assessing its importance in the neural guidance mechanism. DOI: 10.4018/978-1-60960-491-2.ch028","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"65 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127952791","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Single Nucleotide Polymorphism and its Application in Mapping Loci Involved in Developing Human Diseases and Traits","authors":"Rui-Ru Ji","doi":"10.4018/ijcmam.2012100106","DOIUrl":"https://doi.org/10.4018/ijcmam.2012100106","url":null,"abstract":"Common diseases or traits in humans are often influenced by complex interactions among multiple genes as well as environmental and lifestyle factors rather than being attributable to a genetic variation within a single gene. Identification of genes that confer disease susceptibility can be facilitated by studying DNA markers such as single nucleotide polymorphism (SNP) associated with a disease trait. Genome-wide association approaches offers a systematic analysis of the association of hundreds of thousands of SNPs with a quantitative complex trait. This method has been successfully applied to a wide variety of common human diseases and traits, and has generated valuable findings that have improved the understanding of the genetic basis of many complex traits. This article outlines the general mapping process and methods, highlights the success stories, and describes some limitations and challenges that lie ahead. Single Nucleotide Polymorphism and its Application in Mapping Loci Involved in Developing Human Diseases and Traits","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"20 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122512249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Human Oral Bioavailability Prediction of Four Kinds of Drugs","authors":"A. Yan, Zhi Wang, Jiaxuan Li, Meng Meng","doi":"10.4018/ijcmam.2012100104","DOIUrl":"https://doi.org/10.4018/ijcmam.2012100104","url":null,"abstract":"In the development of drugs intended for oral use, good drug absorption and appropriate drug delivery are very important. Now the predictions for drug absorption and oral bioavailability follow similar approach: calculate molecular descriptors for molecules and build the prediction models. This approach works well for the prediction of compounds which cross a cell membrane from a region of high concentration to one of low concentration, but it does not work very well for the prediction of oral bioavailability, which represents the percentage of an oral dose which is able to produce a pharmacological activity. The models for bioavailability had limited predictability because there are a variety of pharmacokinetic factors influencing human oral bioavailability. Recent study has shown that good quantitative relationship could be obtained for subsets of drugs, such as those that have similar structure or the same pharmacological activity, or those that exhibit similar absorption and metabolism mechanisms. In this work, using MLR (Multiple Linear Regression) and SVM (Support Vector Machine), quantitative bioavailability prediction models were built for four kinds of drugs, which are Angiotensin Converting Enzyme Inhibitors or Angiotensin II Receptor Antagonists, Calcium Channel Blockers, Sodium and Potassium Channels Blockers and Quinolone Antimicrobial Agents. Explorations into subsets of compounds were performed and reliable prediction models were built for these four kinds of drugs. This work represents an exploration in predicting human oral bioavailability and could be used in other dataset of compounds with the same pharmacological activity. Human Oral Bioavailability Prediction of Four Kinds of Drugs","PeriodicalId":162417,"journal":{"name":"Int. J. Comput. Model. Algorithms Medicine","volume":"17 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-10-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116742134","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}