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Annual International Conference on Research in Computational Molecular Biology最新文献

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Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads 从高度嵌合Reads组装基因组和迷你宏基因组
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_13
S. Nurk, A. Bankevich, D. Antipov, A. Gurevich, A. Korobeynikov, A. Lapidus, Andrey Prjibelsky, A. Pyshkin, Alexander Sirotkin, Yakov Sirotkin, R. Stepanauskas, J. McLean, R. Lasken, S. Clingenpeel, T. Woyke, G. Tesler, M. Alekseyev, P. Pevzner
{"title":"Assembling Genomes and Mini-metagenomes from Highly Chimeric Reads","authors":"S. Nurk, A. Bankevich, D. Antipov, A. Gurevich, A. Korobeynikov, A. Lapidus, Andrey Prjibelsky, A. Pyshkin, Alexander Sirotkin, Yakov Sirotkin, R. Stepanauskas, J. McLean, R. Lasken, S. Clingenpeel, T. Woyke, G. Tesler, M. Alekseyev, P. Pevzner","doi":"10.1007/978-3-642-37195-0_13","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_13","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"258 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116022766","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 610
Identification of Ultramodified Proteins Using Top-Down Spectra 自顶向下光谱法鉴定超修饰蛋白
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_11
Xiaowen Liu, S. Hengel, Si Wu, N. Tolić, L. Paša-Tolić, P. Pevzner
{"title":"Identification of Ultramodified Proteins Using Top-Down Spectra","authors":"Xiaowen Liu, S. Hengel, Si Wu, N. Tolić, L. Paša-Tolić, P. Pevzner","doi":"10.1007/978-3-642-37195-0_11","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_11","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"38 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126189744","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs 一种由内到外的线性校正结构化rna序列错误的算法
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_17
Vladimir Reinharz, Yann Ponty, J. Waldispühl
{"title":"A Linear Inside-Outside Algorithm for Correcting Sequencing Errors in Structured RNAs","authors":"Vladimir Reinharz, Yann Ponty, J. Waldispühl","doi":"10.1007/978-3-642-37195-0_17","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_17","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"23 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130566381","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data - (Extended Abstract) 从噪声和不完整数据中计算整个生物网络中的基序-(扩展摘要)
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_24
Ngoc Hieu Tran, K. P. Choi, Louxin Zhang
{"title":"Counting Motifs in the Entire Biological Network from Noisy and Incomplete Data - (Extended Abstract)","authors":"Ngoc Hieu Tran, K. P. Choi, Louxin Zhang","doi":"10.1007/978-3-642-37195-0_24","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_24","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122610664","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure 从残余化学位移各向异性中提取结构信息:多肽平面取向的解析解和确定蛋白质结构的应用
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_25
C. Tripathy, A. Yan, Pei Zhou, B. Donald
{"title":"Extracting Structural Information from Residual Chemical Shift Anisotropy: Analytic Solutions for Peptide Plane Orientations and Applications to Determine Protein Structure","authors":"C. Tripathy, A. Yan, Pei Zhou, B. Donald","doi":"10.1007/978-3-642-37195-0_25","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_25","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"7 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127209569","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Genome-Wide Survival Analysis of Somatic Mutations in Cancer 癌症体细胞突变的全基因组生存分析
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_26
Fabio Vandin, Alexandra Papoutsaki, Benjamin J. Raphael, E. Upfal
{"title":"Genome-Wide Survival Analysis of Somatic Mutations in Cancer","authors":"Fabio Vandin, Alexandra Papoutsaki, Benjamin J. Raphael, E. Upfal","doi":"10.1007/978-3-642-37195-0_26","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_26","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"47 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116208178","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An Optimal Algorithm for Building the Majority Rule Consensus Tree 构建多数决规则共识树的最优算法
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_8
J. Jansson, Chuanqi Shen, W. Sung
{"title":"An Optimal Algorithm for Building the Majority Rule Consensus Tree","authors":"J. Jansson, Chuanqi Shen, W. Sung","doi":"10.1007/978-3-642-37195-0_8","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_8","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"8 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125057551","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties - (Extended Abstract) 利用结构邻域特性提高蛋白质相互作用热点预测性能-(扩展摘要)
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_32
Lei Deng, J. Guan, Xiaoming Wei, Yuan Yi, Shuigeng Zhou
{"title":"Boosting Prediction Performance of Protein-Protein Interaction Hot Spots by Using Structural Neighborhood Properties - (Extended Abstract)","authors":"Lei Deng, J. Guan, Xiaoming Wei, Yuan Yi, Shuigeng Zhou","doi":"10.1007/978-3-642-37195-0_32","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_32","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"31 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134641597","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data 利用半定嵌入法和Hi-C数据推断染色体的空间组织
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_31
Zhizhuo Zhang, Guoliang Li, K. Toh, W. Sung
{"title":"Inference of Spatial Organizations of Chromosomes Using Semi-definite Embedding Approach and Hi-C Data","authors":"Zhizhuo Zhang, Guoliang Li, K. Toh, W. Sung","doi":"10.1007/978-3-642-37195-0_31","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_31","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"30 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123960989","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 40
High Resolution Modeling of Chromatin Interactions 染色质相互作用的高分辨率建模
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2013-04-07 DOI: 10.1007/978-3-642-37195-0_16
C. Reeder, D. Gifford
{"title":"High Resolution Modeling of Chromatin Interactions","authors":"C. Reeder, D. Gifford","doi":"10.1007/978-3-642-37195-0_16","DOIUrl":"https://doi.org/10.1007/978-3-642-37195-0_16","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"69 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2013-04-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127146882","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
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