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An Alignment-Free Regression Approach for Estimating Allele-Specific Expression Using RNA-Seq Data 利用RNA-Seq数据估计等位基因特异性表达的无比对回归方法
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_6
Chen-Ping Fu, V. Jojic, L. McMillan
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引用次数: 5
A Geometric Clustering Algorithm and Its Applications to Structural Data 一种几何聚类算法及其在结构数据中的应用
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_29
Shutan Xu, Shuxue Zou, Lincong Wang
{"title":"A Geometric Clustering Algorithm and Its Applications to Structural Data","authors":"Shutan Xu, Shuxue Zou, Lincong Wang","doi":"10.1007/978-3-319-05269-4_29","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_29","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"8 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"122162325","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time HIT'nDRIVE:基于命中时间的多驱动基因优先排序
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_23
Raunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas Sauerwald, Phuong Dao, Shawn Anderson, H. Beltran, M. Rubin, C. Collins, Gholamreza Haffari, S. C. Sahinalp
{"title":"HIT'nDRIVE: Multi-driver Gene Prioritization Based on Hitting Time","authors":"Raunak Shrestha, Ermin Hodzic, Jake Yeung, Kendric Wang, Thomas Sauerwald, Phuong Dao, Shawn Anderson, H. Beltran, M. Rubin, C. Collins, Gholamreza Haffari, S. C. Sahinalp","doi":"10.1007/978-3-319-05269-4_23","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_23","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"48 2 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131307224","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 42
A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation 空间感知单倍型复制模型及其在基因型插入中的应用
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_30
Wen-Yun Yang, F. Hormozdiari, E. Eskin, B. Pasaniuc
{"title":"A Spatial-Aware Haplotype Copying Model with Applications to Genotype Imputation","authors":"Wen-Yun Yang, F. Hormozdiari, E. Eskin, B. Pasaniuc","doi":"10.1007/978-3-319-05269-4_30","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_30","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"74 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123088299","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes 一种计算重复基因基因组DCJ距离的精确算法
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_22
Mingfu Shao, Yu Lin, Bernard M. E. Moret
{"title":"An Exact Algorithm to Compute the DCJ Distance for Genomes with Duplicate Genes","authors":"Mingfu Shao, Yu Lin, Bernard M. E. Moret","doi":"10.1007/978-3-319-05269-4_22","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_22","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"30 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"131993922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 28
Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts Tractatus:一种精确的次二次算法来推断相同的多共享单倍型区域
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_1
D. Aguiar, E. Morrow, S. Istrail
{"title":"Tractatus: An Exact and Subquadratic Algorithm for Inferring Identical-by-Descent Multi-shared Haplotype Tracts","authors":"D. Aguiar, E. Morrow, S. Istrail","doi":"10.1007/978-3-319-05269-4_1","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_1","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"351 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"134114453","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
PASTA: Ultra-Large Multiple Sequence Alignment PASTA:超大多序列比对
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_15
S. Mirarab, Nam-phuong Nguyen, T. Warnow
{"title":"PASTA: Ultra-Large Multiple Sequence Alignment","authors":"S. Mirarab, Nam-phuong Nguyen, T. Warnow","doi":"10.1007/978-3-319-05269-4_15","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_15","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"121 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121742943","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 74
Changepoint Analysis for Efficient Variant Calling 高效变量调用的变更点分析
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_3
Adam Bloniarz, Ameet Talwalkar, Jonathan Terhorst, Michael I. Jordan, D. Patterson, Bin Yu, Yun S. Song
{"title":"Changepoint Analysis for Efficient Variant Calling","authors":"Adam Bloniarz, Ameet Talwalkar, Jonathan Terhorst, Michael I. Jordan, D. Patterson, Bin Yu, Yun S. Song","doi":"10.1007/978-3-319-05269-4_3","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_3","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129224792","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads WhatsHap:用于下一代测序读取的单倍型组装
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_19
M. Patterson, T. Marschall, N. Pisanti, L. Iersel, L. Stougie, G. Klau, A. Schönhuth
{"title":"WhatsHap: Haplotype Assembly for Future-Generation Sequencing Reads","authors":"M. Patterson, T. Marschall, N. Pisanti, L. Iersel, L. Stougie, G. Klau, A. Schönhuth","doi":"10.1007/978-3-319-05269-4_19","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_19","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"123 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116786902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 33
Building a Pangenome Reference for a Population 构建种群泛基因组参考
Annual International Conference on Research in Computational Molecular Biology Pub Date : 2014-04-02 DOI: 10.1007/978-3-319-05269-4_17
N. Nguyen, G. Hickey, D. Zerbino, B. Raney, Dent Earl, J. Armstrong, D. Haussler, B. Paten
{"title":"Building a Pangenome Reference for a Population","authors":"N. Nguyen, G. Hickey, D. Zerbino, B. Raney, Dent Earl, J. Armstrong, D. Haussler, B. Paten","doi":"10.1007/978-3-319-05269-4_17","DOIUrl":"https://doi.org/10.1007/978-3-319-05269-4_17","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"19 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2014-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124478695","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 13
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