{"title":"Blocked Pattern Matching Problem and Its Applications in Proteomics","authors":"J. Ng, A. Amir, P. Pevzner","doi":"10.1007/978-3-642-20036-6_27","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_27","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"129594418","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection","authors":"Ryan Tarpine, Fumei Lam, S. Istrail","doi":"10.1007/978-3-642-20036-6_42","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_42","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"79 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"123510349","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Metric Labeling and Semi-metric Embedding for Protein Annotation Prediction","authors":"Emre Sefer, Carl Kingsford","doi":"10.1007/978-3-642-20036-6_37","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_37","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"2 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128019285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Yu Peng, Henry C. M. Leung, S. Yiu, Francis Y. L. Chin
{"title":"T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome - (Extended Abstract)","authors":"Yu Peng, Henry C. M. Leung, S. Yiu, Francis Y. L. Chin","doi":"10.1007/978-3-642-20036-6_31","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_31","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"225 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130579871","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Swapnil P Bhatia, Yong J. Kil, B. Ueberheide, B. Chait, L. Tayo, L. Cruz, Bingwen Lu, J. Yates, M. Bern
{"title":"Constrained De Novo Sequencing of Peptides with Application to Conotoxins","authors":"Swapnil P Bhatia, Yong J. Kil, B. Ueberheide, B. Chait, L. Tayo, L. Cruz, Bingwen Lu, J. Yates, M. Bern","doi":"10.1007/978-3-642-20036-6_2","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_2","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"142 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121635987","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Disease Gene Prioritization Based on Topological Similarity in Protein-Protein Interaction Networks","authors":"Sinan Erten, G. Bebek, Mehmet Koyutürk","doi":"10.1007/978-3-642-20036-6_7","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_7","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"54 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"130440701","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
H. Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, W. Fenical, P. Dorrestein, P. Pevzner
{"title":"Multiplex De Novo Sequencing of Peptide Antibiotics","authors":"H. Mohimani, Wei-Ting Liu, Yu-Liang Yang, Susana P. Gaudêncio, W. Fenical, P. Dorrestein, P. Pevzner","doi":"10.1007/978-3-642-20036-6_24","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_24","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128708558","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Haplotype Reconstruction in Large Pedigrees with Many Untyped Individuals","authors":"Xin Li, Jing Li","doi":"10.1007/978-3-642-20036-6_19","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_19","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"17 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"115336822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Variable Selection through Correlation Sifting","authors":"Jim C. Huang, N. Jojic","doi":"10.1007/978-3-642-20036-6_12","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_12","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128733328","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Hapsembler: An Assembler for Highly Polymorphic Genomes","authors":"Nilgun Donmez, M. Brudno","doi":"10.1007/978-3-642-20036-6_5","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_5","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"33 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126470405","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}