Kai Song, Jie Jessie Ren, Zhiyuan Zhai, Xuemei Liu, Minghua Deng, Fengzhu Sun
{"title":"Alignment-Free Sequence Comparison Based on Next Generation Sequencing Reads: Extended Abstract","authors":"Kai Song, Jie Jessie Ren, Zhiyuan Zhai, Xuemei Liu, Minghua Deng, Fengzhu Sun","doi":"10.1007/978-3-642-29627-7_29","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_29","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"30 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"125073777","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Modeling the Breakage-Fusion-Bridge Mechanism: Combinatorics and Cancer Genomics","authors":"Marcus Kinsella, V. Bafna","doi":"10.1007/978-3-642-29627-7_13","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_13","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"114 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128130467","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
S. Bercovici, Jesse M. Rodriguez, M. Elmore, S. Batzoglou
{"title":"Ancestry Inference in Complex Admixtures via Variable-Length Markov Chain Linkage Models","authors":"S. Bercovici, Jesse M. Rodriguez, M. Elmore, S. Batzoglou","doi":"10.1007/978-3-642-29627-7_2","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_2","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"434 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"116184423","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The Three-Dimensional Architecture of a Bacterial Genome and Its Alteration by Genetic Perturbation","authors":"M. Martí-Renom","doi":"10.1007/978-3-642-29627-7_16","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_16","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"11 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"121392406","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Structure-Guided Deimmunization of Therapeutic Proteins","authors":"Andrew S. Parker, K. Griswold, C. Bailey-Kellogg","doi":"10.1007/978-3-642-29627-7_19","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_19","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"25 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"132179925","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"RESQUE: Network Reduction Using Semi-Markov Random Walk Scores for Efficient Querying of Biological Networks (Extended Abstract)","authors":"S. M. Sahraeian, Byung-Jun Yoon","doi":"10.1007/978-3-642-29627-7_24","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_24","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"29 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"126537149","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
A. McPherson, Chunxiao Wu, A. Wyatt, Sohrab P. Shah, C. Collins, S. C. Sahinalp
{"title":"Discovery of Complex Genomic Rearrangements in Cancer Using High-Throughput Sequencing","authors":"A. McPherson, Chunxiao Wu, A. Wyatt, Sohrab P. Shah, C. Collins, S. C. Sahinalp","doi":"10.1007/978-3-642-29627-7_17","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_17","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"40 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"127774566","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
B. Alipanahi, Nathan Krislock, A. Ghodsi, Henry Wolkowicz, L. Donaldson, Ming Li
{"title":"Protein Structure by Semidefinite Facial Reduction","authors":"B. Alipanahi, Nathan Krislock, A. Ghodsi, Henry Wolkowicz, L. Donaldson, Ming Li","doi":"10.1007/978-3-642-29627-7_1","DOIUrl":"https://doi.org/10.1007/978-3-642-29627-7_1","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"1 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2012-04-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"128729460","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Geometric Interpretation of Gene Expression by Sparse Reconstruction of Transcript Profiles","authors":"Yosef Prat, M. Fromer, M. Linial, N. Linial","doi":"10.1007/978-3-642-20036-6_33","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_33","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"101 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"133571725","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
F. Hormozdiari, I. Hajirasouliha, A. McPherson, E. Eichler, S. C. Sahinalp
{"title":"Simultaneous Structural Variation Discovery in Multiple Paired-End Sequenced Genomes","authors":"F. Hormozdiari, I. Hajirasouliha, A. McPherson, E. Eichler, S. C. Sahinalp","doi":"10.1007/978-3-642-20036-6_11","DOIUrl":"https://doi.org/10.1007/978-3-642-20036-6_11","url":null,"abstract":"","PeriodicalId":160293,"journal":{"name":"Annual International Conference on Research in Computational Molecular Biology","volume":"32 1","pages":"0"},"PeriodicalIF":0.0,"publicationDate":"2011-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"124798006","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}