Journal of Biogeography最新文献

{"title":"Ecological versus biogeographical regionalization: Colliding or colluding?","authors":"Ladislav Mucina","doi":"10.1111/jbi.14853","DOIUrl":"10.1111/jbi.14853","url":null,"abstract":"<p>This perspective addresses the nature of the past and current relationships between the ecological and biogeographical regionalization of plants and plant communities. It uses four examples (two related to continental scale and two related to regional/local scale) to document the cases of cross-pollination between both approaches in the past and the need for concerted use of both ecological and distributional data in formulating robust regional spatial classification systems of biotic assemblages.</p>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140809271","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"No optimal spatial filtering distance for mitigating sampling bias in ecological niche models","authors":"Quentin Lamboley,&nbsp;Yoan Fourcade","doi":"10.1111/jbi.14854","DOIUrl":"10.1111/jbi.14854","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>The continuous development of statistical tools applied to ecology has contributed to great advances for modelling species' niches and distributions from opportunistic observations. However, as these observations are subject to biases caused by spatial variation in sampling effort, ecological niche models (ENMs) are also frequently biased. Among several bias correction methods that have been proposed, spatial filtering—imposing a minimum distance between occurrences—is widely used, yet lacks clear guidelines for choosing the filtering distance. Here, we aimed to explore the impact of spatial filtering distances on the performance of ENMs.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Europe.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Taxon</h3>\u0000 \u0000 <p>Virtual species.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We applied ENMs to two virtual species with contrasting levels of specialisation, across a spectrum of modelling conditions, bias types and sample sizes.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>Models applied to the specialist species had on average a lower performance than those applied to the generalist species. Using a biased sample reduced model performance, especially when the bias was strong, and when the sample size was large. In many cases, spatial filtering failed to improve model performance or even reduced it. We did find an improvement for the generalist species modelled with large and strongly biased datasets. However, there was no optimal filtering distance, as this improvement was linearly and positively associated with filtering distance. Moreover, because the initial bias was strong and the filtered dataset became very small, the resulting models had only very low accuracy.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>Our results suggest that there is no optimal filtering distance for dealing with sampling bias in ENMs, and that spatial filtering never improves model performance enough to draw accurate predictions. We therefore recommend spatial filtering to be employed cautiously, only when enough data are available, and bearing in mind that its effectiveness remains highly uncertain.</p>\u0000 </section>\u0000 </div>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.14854","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140657810","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Post-glacial recolonization and multiple scales of secondary contact contribute to contemporary Atlantic salmon (Salmo salar) genomic variation in North America","authors":"Cameron M. Nugent,&nbsp;Tony Kess,&nbsp;Barbara L. Langille,&nbsp;Samantha V. Beck,&nbsp;Steven Duffy,&nbsp;Amber Messmer,&nbsp;Nicole Smith,&nbsp;Sarah J. Lehnert,&nbsp;Brendan F. Wringe,&nbsp;Matthew Kent,&nbsp;Paul Bentzen,&nbsp;Ian R. Bradbury","doi":"10.1111/jbi.14852","DOIUrl":"10.1111/jbi.14852","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>In northern environments, periods of isolation during Pleistocene glaciations and subsequent recolonization and secondary contact have had a significant influence on contemporary diversity of many species. The recent advent of high-resolution genomic analyses allows unprecedented power to resolve genomic signatures of such events in northern species. Here, we provide the highest resolution genomic characterization of Atlantic salmon in North America to date to infer glacial refugia and the geographic scales of post-glacial secondary contact.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>North America.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Taxon</h3>\u0000 \u0000 <p>Atlantic salmon, <i>Salmo salar</i>.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>Samples were collected for 5455 individuals from 148 populations, encompassing the majority of the Atlantic salmon's native range in North America, from Labrador to Maine. Individuals were genotyped using a 220K single nucleotide polymorphism array aligned to the Atlantic salmon (<i>Salmo salar</i>) genome. Spatial genetic structure (principal component analysis, <i>k</i>-means clustering, admixture) was evaluated in conjunction with genomic comparisons of these identified lineages to infer the refugia during the last glacial maximum and regions of secondary contact following recolonization.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>Spatial genomic analyses identified three phylogeographic groups, consistent with the northward recolonization from two southern glacial refugia in North America (a western Maritime lineage and an eastern Newfoundland and Labrador lineage), with subsequent differentiation of the eastern lineage into two separate groups. Secondary contact among these North American groups was observed within the northern Gulf of St. Lawrence, and evidence of trans-Atlantic secondary contact was detected within the eastern Newfoundland and Labrador lineage. Comparison of groups from insular Newfoundland with those from mainland Labrador suggests genomic regions displaying high differentiation were characterized by elevated European admixture, suggesting a possible role of European secondary contact in population divergence.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>These findings present the first evidence suggesting that genomic diversity in extant North American At","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.14852","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140660222","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Contraction and expansion: global geographical variation in reproductive systems of Primula is driven by different mechanisms","authors":"Honghua Shi,&nbsp;Bin Yang,&nbsp;Tong Lyu,&nbsp;Zhiheng Wang,&nbsp;Hang Sun","doi":"10.1111/jbi.14849","DOIUrl":"10.1111/jbi.14849","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>Reproductive systems strongly influence plants' evolution and adaption, and the biogeographic pattern of its variation has intrigued biologists and ecologists. Here, to test the impacts of paleoglaciation on plants' reproductive system variation, we compared the geographical pattern and environmental drivers in the proportions of different reproductive systems in <i>Primula</i> in regions affected and unaffected by paleoglaciation.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Global.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Time Period</h3>\u0000 \u0000 <p>Since the Last Glacial Maximum (LGM).</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Major Taxa Studied</h3>\u0000 \u0000 <p>\u0000 <i>Primula.</i>\u0000 </p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>Using data on reproductive systems and distributions of 604 <i>Primula</i> taxa around the world and 221 along the elevational gradient of the Himalayas, we demonstrated the global pattern and the elevational pattern in the proportions of homostylous taxa. We employed general linear models to establish the relationship between the proportion of homostylous taxa and environmental variables and hierarchical partitioning to assess the relative contributions of these variables in both regions affected and unaffected by paleoglaciation, respectively.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>We found a higher proportion of homostylous taxa in regions glaciated during the LGM than those unglaciated, with different latitudinal patterns and climate drivers. The proportion of homostylous taxa showed varying trends across different regions: increasing with latitude and temperature anomaly in glaciated regions while concentrating at lower latitudes with higher winter temperatures in unglaciated regions. Additionally, homostylous taxa were more prevalent at lower elevations in the Himalayas.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>Our study provides the first quantitative evidence for the hypothesis that selfers are more prevailing in regions affected by paleoglaciation facilitated by recolonization via comparing the geographic pattern and drivers in regions affected and unaffected by paleoglaciation. Our findings also reveal the concentrated distribution of homostylous taxa in <i>Primula</i> at low latitudes, which may be the result of population shrinkage caused by heat stress, facing a more severe survival crisis under the circumstanc","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140609588","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Controlling the effects of sampling bias in biodiversity models","authors":"Ubirajara Oliveira,&nbsp;Britaldo Soares-Filho,&nbsp;Felipe Nunes","doi":"10.1111/jbi.14851","DOIUrl":"10.1111/jbi.14851","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>Sampling bias and gaps have a direct influence on the perceived patterns of biodiversity, hence limiting our ability to make well-informed decisions about biodiversity conservation. Yet most methods either disregard or underestimate the effects of sampling bias and gaps in modelling biodiversity patterns. Our objective is to test the sensitivity of commonly used methods for modelling biodiversity dimensions (richness, endemism, and beta diversity) to sampling bias and collection gaps, and as a way to mitigate those effects we introduce a novel approach that employs the sampling effort to minimize the effects of collection bias and gaps in biodiversity models.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>South America.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>Here, we use controlled simulations of virtual species distribution and sampling effort to test the sensitivity to sampling bias and collection gaps by commonly used methods, that is, species distribution models (SDMs), spatial interpolation (SI), and environmental prediction (EP), for estimating species richness, endemism, and beta diversity. Our research contributes to advancing biodiversity modelling by introducing a novel approach, named uniform sampling from sampling effort (USSE), that employs the sampling effort to minimize the effects of collection bias and gaps.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results and Main Conclusions</h3>\u0000 \u0000 <p>EP with USSE has proven effective in accurately predicting species richness, especially in scenarios in which the sampling effort does not coincide with the biodiversity niches. It outperformed SI and SDMs. The latter performed poorly, yielding the lowest predictive score. In estimating endemism and beta diversity, all methods yielded similar results, without statistically significant differences. For estimating beta diversity, the generalized dissimilarity model proved to be a robust method, even in face of biased sampling. Controlled simulations are key to testing biodiversity methods. These tests can isolate confounding factors inherent to real-world data, enabling robust methodological assessments. Although fieldwork and curation of collections must remain indispensable, novel biodiversity methods could help overcome the limitations of sampling biases, helping expedite conservation actions much needed.</p>\u0000 </section>\u0000 </div>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140609847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Czech Republic butterfly barcoding reveals that distribution of genetic lineages depends on species traits","authors":"Alena Sucháčková Bartoňová,&nbsp;Patrik Škopek,&nbsp;Martin Konvička,&nbsp;Jiří Beneš,&nbsp;Lukáš Spitzer,&nbsp;Claudio Sbaraglia,&nbsp;Vladimír Vrabec,&nbsp;Jana Papp Marešová,&nbsp;Hana Konvičková,&nbsp;Zdeněk Faltýnek Fric","doi":"10.1111/jbi.14848","DOIUrl":"10.1111/jbi.14848","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>The distribution of within-species lineages has been affected by Quaternary climate changes, and population differentiation has been influenced by species life history traits. We investigated whether the distribution of individual mitochondrial genetic lineages reflects the constituent species' traits. Using the functionally diverse group of butterflies, we examined which lineages are present in Central Europe, an important suture zone.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Czech Republic and Western Palearctic.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Taxon</h3>\u0000 \u0000 <p>A total of 140 butterfly species.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We sequenced DNA barcodes (cytochrome c oxidase 1) (959 sequences) of the entire Czech Republic butterfly fauna and used Barcoding of Life Data System to visualise the species' biogeographic patterns across Europe. We categorised the distribution patterns of lineages inhabiting the Czech Republic, and used multivariate statistics to interpret these categories by the butterflies' habitats, life history traits and threat levels.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>Open habitat dwellers with specialist traits belonged to Eastern, Southern and temperate lineages. Habitat generalists and woodland dwellers belonged to the Western lineage, formed several lineages or displayed low genetic diversity; they often developed on woody plants, were large-winged and had long flight periods. The most threatened species were the specialists of Southern, Eastern and temperate lineages.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>The distribution of lineages in Central Europe reflects the history of Quaternary ecosystems: during cold periods of the Pleistocene, the diverse open habitats prevailed and species could expand westwards. Such species also suffer the most under the current anthropogenic habitat alteration. On the other hand, the mobile generalists and woodland dwellers expanded to Central Europe during the Holocene. Our approach of linking the distribution of lineages with species traits can be transferred to other study systems, and we show that DNA barcoding of under-sampled areas represents a powerful tool for discovering the driving forces of biogeography.</p>\u0000 </section>\u0000 </div>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.14848","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140609489","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Cover","authors":"","doi":"10.1111/jbi.14647","DOIUrl":"https://doi.org/10.1111/jbi.14647","url":null,"abstract":"<p>On the cover: <i>Pleroma stenocarpum</i> (<i>Melastomataceae</i>), a key tree species in secondary Yungas montane humid forests, La Paz, Bolivia. Photo credit: Alfredo Fuentes.\u0000 <figure>\u0000 <div><picture>\u0000 <source></source></picture><p></p>\u0000 </div>\u0000 </figure></p>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.9,"publicationDate":"2024-04-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.14647","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140556185","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Linking landscape and genetic variation in the heterogeneous Yungas Andean forest' hotspot: a multi taxa approach","authors":"Lara Inés Baccaro,&nbsp;Mauricio Sebastián Akmentins,&nbsp;Cecilia G. García,&nbsp;Juan José Martínez","doi":"10.1111/jbi.14845","DOIUrl":"10.1111/jbi.14845","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>The factors that influence the diversity of Yungas Andean forest remain unexplored. Our study seeks to investigate the impact of key isolating factors on the genetic structure of multiple taxa, testing for four hypotheses: isolation by distance (IBD), isolation by resistance due to topography (IBRtopo), isolation by resistance due to habitat suitability (IBRsuit) and isolation by environmental dissimilarity (IBE).</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Yungas Andean forest.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Taxon</h3>\u0000 \u0000 <p>Tetrapoda.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>We analysed a dataset consisting of 477 Cyt-b sequences from 138 localities, encompassing 13 species. Through multiple matrix regression, Moran Spectral Randomization of Mantel and GDM analyses, we tested the impact of each extrinsic predictor on observed genetic variation and determined the effect size of environmental variation on genetic divergence. Additionally, we investigated the spatial distribution of lineages within the study species.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>The genetic variation within the Yungas exhibited varied responses that correspond to the regional landscape heterogeneity. We identified different isolating factors as the main predictor for specific species: IBD for <i>Akodon spegazzinii</i>; IBRtopo for certain small mammals' species; IBE for <i>Thylamys cinderella</i> and <i>Oligoryzomys brendae</i>; and IBRsuit for <i>Calomys fecundus</i>, <i>Oreobates barituensis</i> and <i>Melanophryniscus rubriventris</i> with some considerations. Furthermore, our results support the presence of a latitudinal pattern in the distribution of genetic lineages.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>The heterogeneous landscape of the Yungas Andean forest posed varied effects on genetic variation. The effect of topography and continuity of suitable habitats over vertebrate dispersal shapes the genetic diversity, in particular topography acts either as a barrier or as corridor, while habitat suitability resistance mainly shapes endemism genetic structure; local climate represents a strong genetic promoter in transition zones; and the effect of geographic distance is less evident when considering other landscape promoter of genetic divergence. This reinforces the understanding that the complex interplay of environmental and historical factors contributes to the observed patterns of genetic diversity in this region.</p>\u0000 ","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140598933","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Expert-based range maps cannot be replicated using data-driven methods but macroecological conclusions arising from them can","authors":"Heléne Aronsson,&nbsp;Alexander Zizka,&nbsp;Alexandre Antonelli,&nbsp;Søren Faurby","doi":"10.1111/jbi.14847","DOIUrl":"10.1111/jbi.14847","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>Answering many fundamental and applied scientific questions relies on accurate geographic range maps for species, such as those compiled by experts working with the International Union for Conservation of Nature (IUCN). However, these maps are resource demanding to produce and only available for a limited number of organisms. Here, we test to what extent standardized, data-driven methods based on publicly available occurrences can reproduce expert-based IUCN range maps and the macroecological conclusions drawn from them.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Global.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Time Period</h3>\u0000 \u0000 <p>Present.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Taxa</h3>\u0000 \u0000 <p>Birds.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Materials and Methods</h3>\u0000 \u0000 <p>We estimated the geographic ranges for 7385 non-marine bird species which either were non-migratory or had spatially connected breeding and wintering ranges from publicly available, georeferenced point occurrences. We then quantified the spatial overlap between these range estimates and the IUCN expert-derived range estimates. Finally, we compared global species richness patterns and the environmental correlates that emerge from both approaches.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>We find that range estimates based on point occurrence records overlap on average 52% with expert range estimates for the same species. The global species richness patterns estimated under both approaches are overall similar but show local and regional differences, for example, in the tropical Andes of northern South America and the Central Arc region of Africa. The estimated global drivers of richness are similar.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Main Conclusions</h3>\u0000 \u0000 <p>Expert-derived estimates of species distributions are not reproducible by data-driven approaches relying on currently available public records, even for well-documented taxa such as birds. However, these discrepancies do not substantially change our macroecological understanding of global drivers of bird diversity.</p>\u0000 </section>\u0000 </div>","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1111/jbi.14847","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140598930","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

{"title":"Circular genetic structure of the Abies nephrolepis species complex shaped by the circular landform of Northeast Asia","authors":"Myounghai Kwak,&nbsp;Koh Nakamura,&nbsp;Qiaoping Xiang,&nbsp;Jun Wen,&nbsp;Eun Sil Lee,&nbsp;Jaram Hong,&nbsp;Nataliya Kovtonyuk,&nbsp;Maria Kryukova,&nbsp;Olga Korchagina,&nbsp;Kyung Ah Koo,&nbsp;Masakazu G. Iwaizumi,&nbsp;Byoung Yoon Lee,&nbsp;Goro Kokubugata,&nbsp;Xianchun Zhang,&nbsp;Dmitry Lebedev","doi":"10.1111/jbi.14841","DOIUrl":"10.1111/jbi.14841","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Aim</h3>\u0000 \u0000 <p>Pinaceae have been noted for their tendency towards reticulation as a result of interspecific hybridization. Here, we demonstrated the phylogeographic dynamics of the native Northeast Asian sub-alpine conifer, <i>Abies nephrolepis</i> species complex (ANSC), evolving in circular overlaps along the Northeast Asian landform, which functions as a corridor with the sea, thus acting as a geographic barrier.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Location</h3>\u0000 \u0000 <p>Northeast Asia: the Korean Peninsula, Japanese Archipelago, Russian Far East and northeastern China.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Taxon</h3>\u0000 \u0000 <p><i>Abies nephrolepis</i> species complex (Family Pinaceae, Genus <i>Abies</i>, Section <i>Balsamea</i>, <i>Abies nephrolepis, A. koreana, A. veitchii</i> and <i>A. sachalinensis</i>).</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>A total of 728 individuals from 38 ANSC populations were analysed using multiplexed inter-simple sequence repeat genotyping by sequencing to capture variations in biparental nuclear genomes. Eight mitochondrial regions and eight chloroplast regions of each individual were sequenced using the MiSeq platform and Sanger sequencing. Species distribution models were generated.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>Bayesian clustering with 507 nuclear single nucleotide polymorphisms and the discrepancy between cytoplasmic and nuclear genome lineages implied contemporary and ancient connections between neighbouring species in the form of circular overlap. This genetic connectivity was supported by principal component analysis. Strong correlations between genetic distance and geographic distance were observed, suggesting that gene flow occurs through a continuous chain around the sea. We also found that gene flow direction and intensity changed over time, with support from palaeodistribution modelling.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusion</h3>\u0000 \u0000 <p>Past hybridization events were captured in cytoplasmic genomes, generating heterogeneity across maternal ancestries. This intensive phylogeographic study demonstrates speciation with incomplete reproductive isolation (continuous gene flow) among neighbouring species with an alteration of the direction and intensity of gene flow due to climate change. The divergence of ANSC due to repeated isolation and reconnection caused by heterogenous physiological environments and climate fluctuation provides a model to solve evolutionary scenarios for reticulate evolution in Pinaceae and other","PeriodicalId":15299,"journal":{"name":"Journal of Biogeography","volume":null,"pages":null},"PeriodicalIF":3.4,"publicationDate":"2024-04-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140599515","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"环境科学与生态学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}