{"title":"Assessment of Physiological Traits in Cyanobacteria Isolated From Rice Agroecosystems for Biofertilizer Applications","authors":"Anjali Singh, Kamakshi Saxena, Devendra Kumar","doi":"10.1002/jobm.70138","DOIUrl":"10.1002/jobm.70138","url":null,"abstract":"<div>\u0000 \u0000 <p>Cyanobacteria are photosynthetic prokaryotes recognized for their varying pigment composition and capacity to adapt to different ecological situations. Even though they are significant, there aren't many studies comparing native cyanobacterial strains in terms of their ability to be used as biofertilizers. This study comparatively evaluated the physiological characteristics of seven cyanobacterial strains (<i>Nostoc</i> sp., <i>Anabaena</i> sp., <i>Westiellopsis</i> sp., <i>Oscillatoria</i> sp., <i>Tolypothrix</i> sp., <i>Calothrix</i> sp., and <i>Phormidium</i> sp.) isolated from paddy fields in different regions of Uttar Pradesh (Meerut, Muzaffarnagar, and Haridwar regions). The examined parameters included photosynthetic pigments- chlorophyll, carotenoids, phycobiliproteins-Phycocyanin (PC), Phycoerythrin (PE), and Allophycocyanin (APC), Total Soluble Protein (TSP), and carbohydrates. Cultures were cultivated in BG-11 medium, and samples were analyzed at 7th, 14th, 21st, and 28th days of incubation for examination via spectrophotometer. The findings indicated substantial interstrain differences. <i>Anabaena</i> sp. demonstrated the highest levels of chlorophyll, carotenoids, proteins, and carbohydrates on Day 14, while <i>Tolypothrix</i> sp. had the greatest concentrations of APC and PE. The strain-specific variations underscore the metabolic diversity of paddy field cyanobacteria. This thorough comparison of physiological data sheds light on the adaptation mechanisms of cyanobacteria and their potential uses as natural biofertilizers and in biotechnological applications.</p>\u0000 </div>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"66 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146010542","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Bacillus Consortium Promotes the Growth of Pea Plants and Protects Against Fusarium Wilt Disease","authors":"Zainab Shabbir, Waheed Akram, Rameen Rafique, Syeda Kanz-Ul-Eman, Tehmina Anjum, Zill-e-Huma Aftab, Adnan Akhter, Basharat Ali","doi":"10.1002/jobm.70142","DOIUrl":"10.1002/jobm.70142","url":null,"abstract":"<div>\u0000 \u0000 <p>Fusarium wilt disease is a significant challenge to the tomato crop, causing economic losses worldwide. The unwise use of chemical fungicides has raised concerns about food safety. Hence, biocontrol is a sustainable strategy for controlling Fusarium wilt disease. This study aimed to promote growth and manage Fusarium wilt disease in pea plants using two <i>Bacillus</i> strains (<i>Bacillus aryabhattai</i> strain Z-48 and <i>Bacillus cereus</i> strain Z-53) either alone or in a synthetic consortium. The application of the consortium of both Bacillus strains provided maximum protection against Fusarium wilt disease, showing the biocontrol effect of 54.3%. Under Fusarium disease stress, the consortium application increased shoot length, root length and dry biomass up to 88.6%, 31.1%, and 86.7% respectively, compared with the pathogen alone treatment. Likewise, the application of the <i>Bacillus</i> consortium significantly increased the time-course accumulation of defence-related enzymes, and photosynthetic pigments in Pea plants. Non-targeted metabolite profiling indicated extensive remodulations in the production of a wide array of metabolites upon application of the consortium (Z-48 + Z-53). The multivariate analysis showed strong relationships between treatments and different metabolites, including phenylalanine, ursolic acid, and glycerol-3-phosphocholine. The study demonstrates that this Bacillus consortium can be effectively used to develop a biocontrol-based formulation for farming applications.</p>\u0000 </div>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"66 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2026-01-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146018760","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Khalid E. Hamed, Ali M. Haddadi, Ayman F. Omar, Mona Saleh Al Tami, Ritu Rani, Rajesh N. Udavant, Suhail Ashraf
{"title":"Molecular Identification and Pathogenicity of Novel Tomato Root Rot Fungi, With Insights Into Cultivar Resistance in Saudi Arabia","authors":"Khalid E. Hamed, Ali M. Haddadi, Ayman F. Omar, Mona Saleh Al Tami, Ritu Rani, Rajesh N. Udavant, Suhail Ashraf","doi":"10.1002/jobm.70139","DOIUrl":"10.1002/jobm.70139","url":null,"abstract":"<div>\u0000 \u0000 <p>Tomato (<i>Solanum lycopersicum</i> L.) is a major horticultural crop worldwide but remains highly vulnerable to soil-borne fungal pathogens that threaten greenhouse production. Increasing incidences of root rot and wilt have been observed in tomato nurseries and greenhouses in the Qassim and Riyadh regions of Saudi Arabia. This study aimed to identify the causal fungal agents and assess cultivar resistance under controlled conditions. Symptomatic root samples were collected, and pathogens were isolated, morphologically characterized, and confirmed through internal transcribed spacer (ITS) sequencing. Pathogenicity tests verified <i>Fusarium oxysporum</i>, <i>Fusarium foetens</i>, <i>Ectophoma multirostrata</i>, and <i>Pygmaeomyces thomasii</i> as causal agents of tomato root rot and wilt. Notably, <i>E. multirostrata</i> and <i>P. thomasii</i> were recorded for the first time as tomato root pathogens in Saudi Arabia. Four commercial tomato cultivars (Ace 55 VF, Marmande, Rio Grande, and Red Cherry) were evaluated for resistance. Disease incidence, severity, and growth parameters revealed significant variability among cultivars, with ‘Red Cherry’ and ‘Rio Grande’ showing enhanced resistance compared to more susceptible varieties. These results emphasize the novelty of detecting two previously unreported pathogens in Saudi Arabia and demonstrate the practical relevance of identifying resistant cultivars for field application. Overall, the study provides valuable insights supporting sustainable tomato production and offers a foundation for future resistance-breeding strategies.</p>\u0000 </div>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"66 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2026-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145998347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Oxy-Imino-Cephalosporin Induces Expression of Secondary Resistance Genes repB and mtgA in Escherichia coli Harboring blaCTX-M ESBL","authors":"Nikita Karmakar, Jayalaxmi Wangkheimayum, Debadatta Dhar Chanda, Manabendra Dutta Choudhury, Amitabha Bhattacharjee","doi":"10.1002/jobm.70135","DOIUrl":"10.1002/jobm.70135","url":null,"abstract":"<div>\u0000 \u0000 <p><i>Escherichia coli</i> is considered a major extended-spectrum β-lactamases producer, of which CTX-M is the most common member. However, the different variants of this primary resistance-determinant make it challenging to detect by conventional PCR-based techniques. Therefore, in this study, we investigated the transcriptional response of 2 secondary resistance genes, <i>repB</i> and <i>mtgA</i>, under sub-inhibitory concentrations of oxy-imino cephalosporins in resistant isolates of <i>E. coli</i> harboring <i>bla</i><sub>CTX-M</sub>. The STRING database and Cytoscape software were used to identify the secondary resistance genes by gene network analysis. The cephalosporin-resistant isolate of <i>E. coli</i> co-harboring <i>repB</i> and <i>mtgA</i>, along with <i>bla</i><sub>CTX-M</sub>, was employed for the current study. The <i>bla</i><sub>CTX-M</sub>-carrying plasmid was successfully eliminated from the native-type isolate using 6% and 8% SDS treatment for 7 days. The plasmid was also transformed into a recipient strain, <i>E. coli</i> DH5α, by the heat-shock method. All three models were grown under sub-inhibitory stress of cephalosporins, and the transcriptional response of <i>repB</i> and <i>mtgA</i> was determined by quantitative real-time PCR. The study revealed that the transcriptional responses of both <i>repB</i> and <i>mtgA</i> were antibiotic-specific, which potentially can serve as a secondary resistance reporter for cephalosporin resistance in <i>E. coli</i>.</p>\u0000 </div>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"66 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-12-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145849359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Genomics and Synthetic Microbiology in Environmental Interactions","authors":"Erika Kothe","doi":"10.1002/jobm.70136","DOIUrl":"https://doi.org/10.1002/jobm.70136","url":null,"abstract":"","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"66 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145848128","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Kanwarpreet Singh, Shivani Sharma, Anu Kalia, Pooja Manchanda
{"title":"Advancement in Mushroom Transformation: From Conventional Techniques to Modern Genetic Engineering","authors":"Kanwarpreet Singh, Shivani Sharma, Anu Kalia, Pooja Manchanda","doi":"10.1002/jobm.70132","DOIUrl":"10.1002/jobm.70132","url":null,"abstract":"<div>\u0000 \u0000 <p>Mushrooms have long been valued for their nutritional, pharmaceutical, and culinary benefits. Recent studies showcased mushrooms as bio-factories for protein production, and as a source of value-added products by employing genetic manipulation and molecular transformation techniques. Advancements in molecular tools and transformation methods have enhanced the efficiency of genetic improvements in mushrooms by both conventional and modern genetic engineering techniques, paving the way for their use in various industrial applications. Genetic transformation in mushrooms involves transferring genes within and across species to understand gene functions and improve mushroom qualities. The techniques involved in transformation includes <i>Agrobacterium</i>-mediated transformation, hybridization, mutation breeding, particle bombardment, protoplast fusion, and CRISPR/Cas9. This review outlines the life cycle of mushrooms, major difficulties in mushroom transformation, various transformation techniques, their history, efficiency, and success rate. It also highlights the potential of genetic engineering to revolutionize mushroom cultivation and their applications.</p>\u0000 </div>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"66 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145762296","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Quorum Sensing Regulates the Growth of Ketogulonicigenium vulgare During the Fermentation Process of Vitamin C","authors":"Qian Zhang, Shiwei Wei, Bo Zhang, Shuxia Lyu","doi":"10.1002/jobm.70134","DOIUrl":"10.1002/jobm.70134","url":null,"abstract":"<div>\u0000 \u0000 <p>Quorum sensing (QS), a cell-density-dependent intercellular communication system, regulates bacterial gene expression and is widespread in microbial populations. However, the role of QS in the vitamin C fermentation consortium, comprising <i>Ketogulonicigenium vulgare</i> and <i>Bacillus pumilus</i>, remains unclear. This study analyzed QS-related gene expression in <i>K. vulgare</i> 25B-1 and <i>B. pumilus</i> during mono- and co-fermentation. We identified a novel quorum-quenching lactonase, YtnP, in <i>B. pumilus</i>, which degraded signaling molecules of 25B-1. YtnP inhibited QS-associated gene expression in 25B-1 and enhanced 2-keto-L-gulonic acid (2-KLG) production at high cell densities. Additionally, YtnP suppressed cell lysis and alleviated oxidative stress in 25B-1. These findings provided insights into interspecies communication in vitamin C fermentation and other more complex microbial consortia interactions.</p>\u0000 </div>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"66 1","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145742676","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Cover: Journal of Basic Microbiology. 12/2025","authors":"","doi":"10.1002/jobm.70125","DOIUrl":"https://doi.org/10.1002/jobm.70125","url":null,"abstract":"<p><b>Cover illustration:</b></p><p>A segment of the <i>Methanococcus maripaludis</i> gene containing simple sequence repeats (SSR) is shown with corresponding amino acid repeats (Leu: orange, Glu: pink). Rainbowcolored protein models (blue: N-terminal, red: C-terminal) highlight SSR-induced structural rearrangements, including loop refolding that enhances compactness and alters the N-terminal catalytic domain. The SSR region, positioned near the N-terminal, suggests a potential role in mediating local contacts and structural modulation.</p><p>(Image: Pragya Anand, Department of Biotechnology, Babasaheb Bhimrao Ambedkar University, Lucknow, India)\u0000\u0000 <figure>\u0000 <div><picture>\u0000 <source></source></picture><p></p>\u0000 </div>\u0000 </figure></p>","PeriodicalId":15101,"journal":{"name":"Journal of Basic Microbiology","volume":"65 12","pages":""},"PeriodicalIF":2.7,"publicationDate":"2025-12-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/jobm.70125","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145666190","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}