FEMS microbiology ecology最新文献_第7页

Pollution gradients shape microbial communities associated with Ae. albopictus larval habitats in urban community gardens. 污染梯度塑造了城市社区花园中与白纹伊蚊幼虫栖息地相关的微生物群落。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae129

Penelope Duval, Edwige Martin, Laurent Vallon, Pierre Antonelli, Maxime Girard, Aymeric Signoret, Patricia Luis, Danis Abrouk, Laure Wiest, Aurélie Fildier, Christelle Bonnefoy, Patrick Jame, Erik Bonjour, Amelie Cantarel, Jonathan Gervaix, Emmanuelle Vulliet, Rémy Cazabet, Guillaume Minard, Claire Valiente Moro

{"title":"Pollution gradients shape microbial communities associated with Ae. albopictus larval habitats in urban community gardens.","authors":"Penelope Duval, Edwige Martin, Laurent Vallon, Pierre Antonelli, Maxime Girard, Aymeric Signoret, Patricia Luis, Danis Abrouk, Laure Wiest, Aurélie Fildier, Christelle Bonnefoy, Patrick Jame, Erik Bonjour, Amelie Cantarel, Jonathan Gervaix, Emmanuelle Vulliet, Rémy Cazabet, Guillaume Minard, Claire Valiente Moro","doi":"10.1093/femsec/fiae129","DOIUrl":"10.1093/femsec/fiae129","url":null,"abstract":"The Asian tiger mosquito Aedes albopictus is well adapted to urban environments and takes advantage of the artificial containers that proliferate in anthropized landscapes. Little is known about the physicochemical, pollutant, and microbiota compositions of Ae. albopictus-colonized aquatic habitats and whether these properties differ with noncolonized habitats. We specifically addressed this question in French community gardens by investigating whether pollution gradients (characterized either by water physicochemical properties combined with pollution variables or by the presence of organic molecules in water) influence water microbial composition and then the presence/absence of Ae. albopictus mosquitoes. Interestingly, we showed that the physicochemical and microbial compositions of noncolonized and colonized waters did not significantly differ, with the exception of N2O and CH4 concentrations, which were higher in noncolonized water samples. Moreover, the microbial composition of larval habitats covaried differentially along the pollution gradients according to colonization status. This study opens new avenues on the impact of pollution on mosquito habitats in urban areas and raises questions on the influence of biotic and abiotic interactions on adult life-history traits and their ability to transmit pathogens to humans.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11523617/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142344411","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Artificial subsurface lithoautotrophic microbial ecosystems and gas storage in deep subsurface. 人工可持续土地退化机制与深层地下的天然气储存。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae142

Anthony Ranchou-Peyruse

{"title":"Artificial subsurface lithoautotrophic microbial ecosystems and gas storage in deep subsurface.","authors":"Anthony Ranchou-Peyruse","doi":"10.1093/femsec/fiae142","DOIUrl":"10.1093/femsec/fiae142","url":null,"abstract":"Over the next few years, it is planned to convert all or part of the underground gas storage (UGS) facilities used for natural gas (salt caverns, depleted hydrocarbon reservoirs, and deep aquifers) into underground dihydrogen (H2) storage reservoirs. These deep environments host microbial communities, some of which are hydrogenotrophic (sulfate reducers, acetogens, and methanogens). The current state of microbiological knowledge is thus presented for the three types of UGS facilities. In the mid-1990s, the concept of anaerobic subsurface lithoautotrophic microbial ecosystems, or SLiMEs, emerged. It is expected that the large-scale injection of H2 into subsurface environments will generate new microbial ecosystems called artificial SLiMEs, which could persist over time. These artificial SLiMEs could lead to H2 loss, an intense methanogenic activity, a degradation of gas quality and a risk to installations through sulfide production. However, recent studies on salt caverns and deep aquifers suggest that hydrogenotrophic microbial activity also leads to alkalinization (up to pH 10), which can constrain hydrogenotrophy. Therefore, studying and understanding these artificial SLiMEs is both a necessity for the development of the H2 industry and presents an opportunity for ecologists to monitor the evolution of deep environments in real time.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11549562/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142497787","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

FEMSEC-thematic issue "Rhizosphere-a One Health concept". FEMSEC 专题 "根瘤菌圈--一个健康概念"。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae136

Anton Hartmann, Luz de Bashan, Birgit Wassermann, Marcus A Horn, Angela Sessitsch

引用次数: 0

Habitat specificity modulates the bacterial biogeographic patterns in the Southern Ocean. 栖息地特异性改变了南大洋的细菌生物地理格局。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae134

Mélanie Delleuze, Guillaume Schwob, Julieta Orlando, Karin Gerard, Thomas Saucède, Paul Brickle, Elie Poulin, Léa Cabrol

{"title":"Habitat specificity modulates the bacterial biogeographic patterns in the Southern Ocean.","authors":"Mélanie Delleuze, Guillaume Schwob, Julieta Orlando, Karin Gerard, Thomas Saucède, Paul Brickle, Elie Poulin, Léa Cabrol","doi":"10.1093/femsec/fiae134","DOIUrl":"10.1093/femsec/fiae134","url":null,"abstract":"Conceptual biogeographic frameworks have proposed that the relative contribution of environmental and geographical factors on microbial distribution depends on several characteristics of the habitat (e.g. environmental heterogeneity, species diversity, and proportion of specialist/generalist taxa), all of them defining the degree of habitat specificity, but few experimental demonstrations exist. Here, we aimed to determine the effect of habitat specificity on bacterial biogeographic patterns and assembly processes in benthic coastal ecosystems of the Southern Ocean (Patagonia, Falkland/Malvinas, Kerguelen, South Georgia, and King George Islands), using 16S rRNA gene metabarcoding. The gradient of habitat specificity resulted from a 'natural experimental design' provided by the Abatus sea urchin model, from the sediment (least specific habitat) to the intestinal tissue (most specific habitat). The phylogenetic composition of the bacterial communities showed a clear differentiation by site, driven by a similar contribution of geographic and environmental distances. However, the strength of this biogeographic pattern decreased with increasing habitat specificity: sediment communities showed stronger geographic and environmental divergence compared to gut tissue. The proportion of stochastic and deterministic processes contributing to bacterial assembly varied according to the geographic scale and the habitat specificity level. For instance, an increased contribution of dispersal limitation was observed in gut tissue habitat. Our results underscore the importance of considering different habitats with contrasting levels of specificity to better understand bacterial biogeography and assembly processes over oceanographic scales.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11523047/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142371424","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Metabarcoding reveals ecologically distinct fungal assemblages in river and groundwater along an Austrian alpine to lowland gradient. 元条码揭示了奥地利从高山到低地梯度河流和地下水中生态独特的真菌群落。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae139

Alice Retter, Christian Griebler, R Henrik Nilsson, Johannes Haas, Steffen Birk, Eva Breyer, Federico Baltar, Clemens Karwautz

{"title":"Metabarcoding reveals ecologically distinct fungal assemblages in river and groundwater along an Austrian alpine to lowland gradient.","authors":"Alice Retter, Christian Griebler, R Henrik Nilsson, Johannes Haas, Steffen Birk, Eva Breyer, Federico Baltar, Clemens Karwautz","doi":"10.1093/femsec/fiae139","DOIUrl":"10.1093/femsec/fiae139","url":null,"abstract":"Biodiversity, the source of origin, and ecological roles of fungi in groundwater are to this day a largely neglected field in fungal and freshwater ecology. We used DNA-based Illumina high-throughput sequence analysis of both fungal gene markers 5.8S and internal transcribed spacers region 2 (ITS2), improving taxonomic classification. This study focused on the groundwater and river mycobiome along an altitudinal and longitudinal transect of a pre-alpine valley in Austria in two seasons. Using Bayesian network modeling approaches, we identified patterns in fungal community assemblages that were mostly shaped by differences in landscape (climatic, topological, and geological) and environmental conditions. While river fungi were comparatively more diverse, unique fungal assemblages could be recovered from groundwater, including typical aquatic lineages such as Rozellomycota and Olpidiomycota. The most specious assemblages in groundwater were not linked to the input of organic material from the surface, and as such, seem to be sustained by characteristic groundwater conditions. Based on what is known from closely related fungi, our results suggest that the present fungal communities potentially contribute to mineral weathering, carbon cycling, and denitrification in groundwater. Furthermore, we were able to observe the effects of varying land cover due to agricultural practices on fungal biodiversity in groundwater ecosystems. This study contributes to improving our understanding of fungi in the subsurface aquatic biogeosphere.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11523079/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142399910","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Limited gut bacterial response of tuatara (Sphenodon punctatus) to dietary manipulation and captivity. 疣鼻天鹅（Sphenodon punctatus）肠道细菌对饮食控制和圈养的有限反应。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae141

Carmen Hoffbeck, Danielle R M L Middleton, Susan N Keall, Chye-Mei Huang, An Pas, Kate Irving, Nicola J Nelson, Michael W Taylor

{"title":"Limited gut bacterial response of tuatara (Sphenodon punctatus) to dietary manipulation and captivity.","authors":"Carmen Hoffbeck, Danielle R M L Middleton, Susan N Keall, Chye-Mei Huang, An Pas, Kate Irving, Nicola J Nelson, Michael W Taylor","doi":"10.1093/femsec/fiae141","DOIUrl":"10.1093/femsec/fiae141","url":null,"abstract":"The bacteria of a host's digestive tract play crucial roles in digestion and pathogen resistance. Hosts living in captivity often have more human interaction and antibiotic use, in addition to differences in diet and environment, compared to their wild counterparts. Consequently, wild and captive animals frequently harbour different bacterial communities. We tested whether diversity of diet provided in captivity shifts the gut bacteria of tuatara, an endemic New Zealand reptile, at three captive sites, and examined how the gut community of these tuatara compares to those in the wild. Dietary manipulation did not cause a strong overall shift in tuatara gut bacteria, but individual tuatara did experience bacterial shifts during manipulation, which subsequently reverted after manipulation. We found that Bacteroides, a genus common in most vertebrate guts but rare in tuatara, increased significantly in the gut during manipulation, then decreased post-manipulation. Finally, the gut bacteria of captive tuatara significantly differed from those of wild tuatara, though most of the dominant bacterial genera found in wild tuatara persisted in captive tuatara. This work represents a first investigation of the captive tuatara bacterial community and establishes the sensitivity of the gut community to dietary manipulation and captivity for this relict reptile.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11523620/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142461585","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Widespread occurrence of dissolved oxygen anomalies, aerobic microbes, and oxygen-producing metabolic pathways in apparently anoxic environments. 在明显缺氧的环境中广泛存在溶解氧异常、好氧微生物和产氧代谢途径。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae132

S Emil Ruff, Laura Schwab, Emeline Vidal, Jordon D Hemingway, Beate Kraft, Ranjani Murali

{"title":"Widespread occurrence of dissolved oxygen anomalies, aerobic microbes, and oxygen-producing metabolic pathways in apparently anoxic environments.","authors":"S Emil Ruff, Laura Schwab, Emeline Vidal, Jordon D Hemingway, Beate Kraft, Ranjani Murali","doi":"10.1093/femsec/fiae132","DOIUrl":"10.1093/femsec/fiae132","url":null,"abstract":"Nearly all molecular oxygen (O2) on Earth is produced via oxygenic photosynthesis by plants or photosynthetically active microorganisms. Light-independent O2 production, which occurs both abiotically, e.g. through water radiolysis, or biotically, e.g. through the dismutation of nitric oxide or chlorite, has been thought to be negligible to the Earth system. However, recent work indicates that O2 is produced and consumed in dark and apparently anoxic environments at a much larger scale than assumed. Studies have shown that isotopically light O2 can accumulate in old groundwaters, that strictly aerobic microorganisms are present in many apparently anoxic habitats, and that microbes and metabolisms that can produce O2 without light are widespread and abundant in diverse ecosystems. Analysis of published metagenomic data reveals that the enzyme putatively capable of nitric oxide dismutation forms four major phylogenetic clusters and occurs in at least 16 bacterial phyla, most notably the Bacteroidota. Similarly, a re-analysis of published isotopic signatures of dissolved O2 in groundwater suggests in situ production in up to half of the studied environments. Geochemical and microbiological data support the conclusion that \"dark oxygen production\" is an important and widespread yet overlooked process in apparently anoxic environments with far-reaching implications for subsurface biogeochemistry and ecology.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11549561/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142344413","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Microbial solutions must be deployed against climate catastrophe. 必须采用微生物解决方案来应对气候灾难。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae144

Raquel Peixoto, Christian R Voolstra, Lisa Y Stein, Philip Hugenholtz, Joana Falcao Salles, Shady A Amin, Max Häggblom, Ann Gregory, Thulani P Makhalanyane, Fengping Wang, Nadège Adoukè Agbodjato, Yinzhao Wang, Nianzhi Jiao, Jay T Lennon, Antonio Ventosa, Patrik M Bavoil, Virginia Miller, Jack A Gilbert

引用次数: 0

Can longer lifespan be associated with gut microbiota involvement in lipid metabolism? 寿命的延长是否与肠道微生物群参与脂质代谢有关？

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae135

Sára Šardzíková, Marta Gajewska, Norbert Gałka, Matúš Štefánek, Andrej Baláž, Martina Garaiová, Roman Holič, Wiesław Świderek, Katarína Šoltys

{"title":"Can longer lifespan be associated with gut microbiota involvement in lipid metabolism?","authors":"Sára Šardzíková, Marta Gajewska, Norbert Gałka, Matúš Štefánek, Andrej Baláž, Martina Garaiová, Roman Holič, Wiesław Świderek, Katarína Šoltys","doi":"10.1093/femsec/fiae135","DOIUrl":"10.1093/femsec/fiae135","url":null,"abstract":"Biological aging is linked to altered body composition and reduced neuroactive steroid hormones like dehydroepiandrosterone sulfate (DHEAS), which can stimulate the GABA signaling pathway via gut microbiota. Our study examined the association of gut microbiota with lifespan in mice through comprehensive analysis of its composition and functional involvement in cholesterol sulfate, a precursor of DHEAS, metabolism. We used 16S rRNA and metagenomic sequencing, followed by metabolic pathway prediction and thin layer chromatography and MALDI-TOF cholesterol sulfate identification. Significant increases in bacteria such as Bacteroides, typical for long-lived and Odoribacter and Colidextribacter, specific for short-lived mice were detected. Furthermore, for males (Rikenella and Alloprevotella) and females (Lactobacillus and Bacteroides), specific bacterial groups emerged as predictors (AUC = 1), highlighting sex-specific patterns. Long-lived mice showed a strong correlation of Bacteroides (0.918) with lipid and steroid hormone metabolism, while a negative correlation of GABAergic synapse with body weight (-0.589). We found that several Bacteroides species harboring the sulfotransferase gene and gene cluster for sulfonate donor synthesis are involved in converting cholesterol to cholesterol sulfate, significantly higher in the feces of long-lived individuals. Overall, we suggest that increased involvement of gut bacteria, mainly Bacteroides spp., in cholesterol sulfate synthesis could ameliorate aging through lipid metabolism.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11503954/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142362686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0

Pseudogymnoascus destructans invasion stage impacts the skin microbial functions of highly vulnerable Myotis lucifugus. 破坏性假丝酵母菌的入侵阶段会影响高度脆弱的滇金丝猴的皮肤微生物功能。

IF 3.5 3区生物学

FEMS microbiology ecology Pub Date : 2024-10-25 DOI: 10.1093/femsec/fiae138

Virginie Lemieux-Labonté, Jananan S Pathmanathan, Yves Terrat, Nicolas Tromas, Anouk Simard, Catherine G Haase, Cori L Lausen, Craig K R Willis, François-Joseph Lapointe

{"title":"Pseudogymnoascus destructans invasion stage impacts the skin microbial functions of highly vulnerable Myotis lucifugus.","authors":"Virginie Lemieux-Labonté, Jananan S Pathmanathan, Yves Terrat, Nicolas Tromas, Anouk Simard, Catherine G Haase, Cori L Lausen, Craig K R Willis, François-Joseph Lapointe","doi":"10.1093/femsec/fiae138","DOIUrl":"10.1093/femsec/fiae138","url":null,"abstract":"The role of the skin microbiome in resistance and susceptibility of wildlife to fungal pathogens has been examined from a taxonomic perspective but skin microbial function, in the context of fungal infection, has yet to be studied. Our objective was to understand effects of a bat fungal pathogen site infection status and course of invasion on skin microbial function. We sampled seven hibernating colonies of Myotis lucifugus covering three-time points over the course of Pseudogymnoascus destructans (Pd) invasion and white nose syndrome (pre-invasion, epidemic, and established). Our results support three new hypotheses about Pd and skin functional microbiome: (1) there is an important effect of Pd invasion stage, especially at the epidemic stage; (2) disruption by the fungus at the epidemic stage could decrease anti-fungal functions with potential negative effects on the microbiome and bat health; (3) the collection site might have a larger influence on microbiomes at the pre-invasion stage rather than at epidemic and established stages. Future studies with larger sample sizes and using meta-omics approaches will help confirm these hypotheses, and determine the influence of the microbiome on wildlife survival to fungal disease.","PeriodicalId":12312,"journal":{"name":"FEMS microbiology ecology","volume":" ","pages":""},"PeriodicalIF":3.5,"publicationDate":"2024-10-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11523048/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142461586","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}

引用次数: 0