ACS Central SciencePub Date : 2025-02-20eCollection Date: 2025-03-26DOI: 10.1021/acscentsci.4c02031
Joanna M White, Taehyoung Kim, Frank S Bates, Timothy P Lodge
{"title":"How Does the Rate of Chain Exchange Relate to Stress Relaxation in Triblock Copolymer Networks?","authors":"Joanna M White, Taehyoung Kim, Frank S Bates, Timothy P Lodge","doi":"10.1021/acscentsci.4c02031","DOIUrl":"10.1021/acscentsci.4c02031","url":null,"abstract":"<p><p>The relationship between macroscopic stress relaxation and molecular-level chain exchange in triblock copolymer micelles has been explored using rheology and time-resolved small-angle neutron scattering (TR-SANS), marking the first measurements of chain exchange in concentrated triblock networks. It has long been assumed in models of transient or thermoreversible networks that the time scales for these two processes are equal. Experimentally, we find that stress relaxation occurs many orders-of-magnitude faster than chain exchange. This difference is quantitatively explained by modest dispersity in the core block that results in a slight asymmetry within any given nominally symmetric triblock. For stress relaxation to occur, only the shorter chain must pull out, while chain exchange is slowed due to the requirement of the eventual pullout of the longer block. The pullout time is extremely sensitive to the length of the core block. This mechanism is supported by measurements with an intentionally asymmetric triblock copolymer, which displays an even larger difference between the stress relaxation and chain exchange rates. These results establish a quantitative molecular-level picture of the chain dynamics associated with stress relaxation in triblock copolymer networks.</p>","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 3","pages":"422-430"},"PeriodicalIF":12.7,"publicationDate":"2025-02-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11950850/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143750238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
ACS Central SciencePub Date : 2025-02-14eCollection Date: 2025-02-26DOI: 10.1021/acscentsci.4c01765
Christopher A Sojdak, David A Polefrone, Hriday M Shah, Cassandra D Vu, Brandon J Orzolek, Pedro M Jimenez Antenucci, Micah Valadez Bush, Marisa C Kozlowski
{"title":"Direct (LC-)MS Identification of Regioisomers from C-H Functionalization by Partial Isotopic Labeling.","authors":"Christopher A Sojdak, David A Polefrone, Hriday M Shah, Cassandra D Vu, Brandon J Orzolek, Pedro M Jimenez Antenucci, Micah Valadez Bush, Marisa C Kozlowski","doi":"10.1021/acscentsci.4c01765","DOIUrl":"10.1021/acscentsci.4c01765","url":null,"abstract":"<p><p>C-H functionalization of complex substrates is highly enabling in total synthesis and in the development of late-stage drug candidates. Much work has been dedicated to developing new methods as well as predictive modeling to accelerate route scouting. However, workflows to identify regioisomeric products are arduous, typically requiring chromatographic separation and/or nuclear magnetic resonance spectroscopy analysis. In addition, most reports focus on major products or do not assign regioisomeric products, which biases predictive models constructed from such data. Herein, we present a novel approach to complex reaction analysis utilizing partial deuterium labels, which enables direct product identification via liquid chromatography-mass spectrometry. When combined with spectral deconvolution, the method generates product ratios while circumventing chromatography altogether. Competitive kinetic isotope effects can also be determined. The resultant data are expected to be useful in the construction of predictive models across several dimensions including reaction selectivity, the impact of structure on mechanism, and mass spectral ionization patterns and expedite the identification of drug metabolites.</p>","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 2","pages":"272-278"},"PeriodicalIF":12.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11868960/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539545","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
ACS Central SciencePub Date : 2025-02-14DOI: 10.1021/acscentsci.4c0176510.1021/acscentsci.4c01765
Christopher A. Sojdak, David A. Polefrone, Hriday M. Shah, Cassandra D. Vu, Brandon J. Orzolek, Pedro M. Jimenez Antenucci, Micah Valadez Bush and Marisa C. Kozlowski*,
{"title":"Direct (LC-)MS Identification of Regioisomers from C–H Functionalization by Partial Isotopic Labeling","authors":"Christopher A. Sojdak, David A. Polefrone, Hriday M. Shah, Cassandra D. Vu, Brandon J. Orzolek, Pedro M. Jimenez Antenucci, Micah Valadez Bush and Marisa C. Kozlowski*, ","doi":"10.1021/acscentsci.4c0176510.1021/acscentsci.4c01765","DOIUrl":"https://doi.org/10.1021/acscentsci.4c01765https://doi.org/10.1021/acscentsci.4c01765","url":null,"abstract":"<p >C–H functionalization of complex substrates is highly enabling in total synthesis and in the development of late-stage drug candidates. Much work has been dedicated to developing new methods as well as predictive modeling to accelerate route scouting. However, workflows to identify regioisomeric products are arduous, typically requiring chromatographic separation and/or nuclear magnetic resonance spectroscopy analysis. In addition, most reports focus on major products or do not assign regioisomeric products, which biases predictive models constructed from such data. Herein, we present a novel approach to complex reaction analysis utilizing partial deuterium labels, which enables direct product identification via liquid chromatography–mass spectrometry. When combined with spectral deconvolution, the method generates product ratios while circumventing chromatography altogether. Competitive kinetic isotope effects can also be determined. The resultant data are expected to be useful in the construction of predictive models across several dimensions including reaction selectivity, the impact of structure on mechanism, and mass spectral ionization patterns and expedite the identification of drug metabolites.</p><p >Partial isotopic labels allow direct identification of regioisomers via their distinct isotopic distributions. Alternately, spectral deconvolution of unseparated mixtures delivers regioisomer ratios.</p>","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 2","pages":"272–278 272–278"},"PeriodicalIF":12.7,"publicationDate":"2025-02-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acscentsci.4c01765","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143486659","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
ACS Central SciencePub Date : 2025-02-12eCollection Date: 2025-02-26DOI: 10.1021/acscentsci.5c00223
Clara E Lavis, Luke D Lavis
{"title":"Stars by the Pocketful.","authors":"Clara E Lavis, Luke D Lavis","doi":"10.1021/acscentsci.5c00223","DOIUrl":"https://doi.org/10.1021/acscentsci.5c00223","url":null,"abstract":"","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 2","pages":"183-186"},"PeriodicalIF":12.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11868956/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
ACS Central SciencePub Date : 2025-02-12DOI: 10.1021/acscentsci.5c0022310.1021/acscentsci.5c00223
Clara E. Lavis, and , Luke D. Lavis,
{"title":"Stars by the Pocketful","authors":"Clara E. Lavis, and , Luke D. Lavis, ","doi":"10.1021/acscentsci.5c0022310.1021/acscentsci.5c00223","DOIUrl":"https://doi.org/10.1021/acscentsci.5c00223https://doi.org/10.1021/acscentsci.5c00223","url":null,"abstract":"<p >SWIR dyes─The Eras Tour. This love story between chemistry and biology shines.</p>","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 2","pages":"183–186 183–186"},"PeriodicalIF":12.7,"publicationDate":"2025-02-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acscentsci.5c00223","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143486979","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
ACS Central SciencePub Date : 2025-02-11DOI: 10.1021/acscentsci.5c0013310.1021/acscentsci.5c00133
Abdulai Zigli, and , Benjamin M. Swarts,
{"title":"Pumping Iron for Tuberculosis Diagnostics","authors":"Abdulai Zigli, and , Benjamin M. Swarts, ","doi":"10.1021/acscentsci.5c0013310.1021/acscentsci.5c00133","DOIUrl":"https://doi.org/10.1021/acscentsci.5c00133https://doi.org/10.1021/acscentsci.5c00133","url":null,"abstract":"<p >Synthetic mycobactin−fluorophore conjugates exploit the mycobacterial iron acquisition pathway to enable sensitive fluorogenic detection of <i>Mycobacterium tuberculosis</i>.</p>","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 2","pages":"190–192 190–192"},"PeriodicalIF":12.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acscentsci.5c00133","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143486822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
ACS Central SciencePub Date : 2025-02-11eCollection Date: 2025-02-26DOI: 10.1021/acscentsci.5c00133
Abdulai Zigli, Benjamin M Swarts
{"title":"Pumping Iron for Tuberculosis Diagnostics.","authors":"Abdulai Zigli, Benjamin M Swarts","doi":"10.1021/acscentsci.5c00133","DOIUrl":"https://doi.org/10.1021/acscentsci.5c00133","url":null,"abstract":"","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 2","pages":"190-192"},"PeriodicalIF":12.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11869129/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143539345","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
ACS Central SciencePub Date : 2025-02-11DOI: 10.1021/acscentsci.4c0161710.1021/acscentsci.4c01617
Andrés R. Tejedor, Anne Aguirre Gonzalez, M. Julia Maristany, Pin Yu Chew, Kieran Russell, Jorge Ramirez, Jorge R. Espinosa* and Rosana Collepardo-Guevara*,
{"title":"Chemically Informed Coarse-Graining of Electrostatic Forces in Charge-Rich Biomolecular Condensates","authors":"Andrés R. Tejedor, Anne Aguirre Gonzalez, M. Julia Maristany, Pin Yu Chew, Kieran Russell, Jorge Ramirez, Jorge R. Espinosa* and Rosana Collepardo-Guevara*, ","doi":"10.1021/acscentsci.4c0161710.1021/acscentsci.4c01617","DOIUrl":"https://doi.org/10.1021/acscentsci.4c01617https://doi.org/10.1021/acscentsci.4c01617","url":null,"abstract":"<p >Biomolecular condensates composed of highly charged biomolecules, such as DNA, RNA, chromatin, and nucleic-acid binding proteins, are ubiquitous in the cell nucleus. The biophysical properties of these charge-rich condensates are largely regulated by electrostatic interactions. Residue-resolution coarse-grained models that describe solvent and ions implicitly are widely used to gain mechanistic insights into the biophysical properties of condensates, offering transferability, computational efficiency, and accurate predictions for multiple systems. However, their predictive accuracy diminishes for charge-rich condensates due to the implicit treatment of solvent and ions. Here, we present Mpipi-Recharged, a residue-resolution coarse-grained model that improves the description of charge effects in biomolecular condensates containing disordered proteins, multidomain proteins, and/or disordered single-stranded RNAs. Mpipi-Recharged introduces a pair-specific asymmetric Yukawa electrostatic potential, informed by atomistic simulations. We show that this asymmetric coarse-graining of electrostatic forces captures intricate effects, such as charge blockiness, stoichiometry variations in complex coacervates, and modulation of salt concentration, without requiring explicit solvation. Mpipi-Recharged provides excellent agreement with experiments in predicting the phase behavior of highly charged condensates. Overall, Mpipi-Recharged improves the computational tools available to investigate the physicochemical mechanisms regulating biomolecular condensates, enhancing the scope of computer simulations in this field.</p><p >Mpipi-Recharged is a residue-resolution coarse-grained model that innovatively treats screened electrostatic interactions, improving predictions for charged biomolecular condensates and ensuring computational efficiency.</p>","PeriodicalId":10,"journal":{"name":"ACS Central Science","volume":"11 2","pages":"302–321 302–321"},"PeriodicalIF":12.7,"publicationDate":"2025-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://pubs.acs.org/doi/epdf/10.1021/acscentsci.4c01617","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143486686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}