Chromosoma最新文献

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The Trithorax group protein ASH1 requires a combination of BAH domain and AT hooks, but not the SET domain, for mitotic chromatin binding and survival. Trithorax组蛋白ASH1需要BAH结构域和AT钩子的结合,但不需要SET结构域,以实现有丝分裂染色质的结合和存活。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-09-01 Epub Date: 2021-07-31 DOI: 10.1007/s00412-021-00762-z
Philipp A Steffen, Christina Altmutter, Eva Dworschak, Sini Junttila, Attila Gyenesei, Xinzhou Zhu, Tobias Kockmann, Leonie Ringrose
{"title":"The Trithorax group protein ASH1 requires a combination of BAH domain and AT hooks, but not the SET domain, for mitotic chromatin binding and survival.","authors":"Philipp A Steffen,&nbsp;Christina Altmutter,&nbsp;Eva Dworschak,&nbsp;Sini Junttila,&nbsp;Attila Gyenesei,&nbsp;Xinzhou Zhu,&nbsp;Tobias Kockmann,&nbsp;Leonie Ringrose","doi":"10.1007/s00412-021-00762-z","DOIUrl":"https://doi.org/10.1007/s00412-021-00762-z","url":null,"abstract":"<p><p>The Drosophila Trithorax group (TrxG) protein ASH1 remains associated with mitotic chromatin through mechanisms that are poorly understood. ASH1 dimethylates histone H3 at lysine 36 via its SET domain. Here, we identify domains of the TrxG protein ASH1 that are required for mitotic chromatin attachment in living Drosophila. Quantitative live imaging demonstrates that ASH1 requires AT hooks and the BAH domain but not the SET domain for full chromatin binding in metaphase, and that none of these domains are essential for interphase binding. Genetic experiments show that disruptions of the AT hooks and the BAH domain together, but not deletion of the SET domain alone, are lethal. Transcriptional profiling demonstrates that intact ASH1 AT hooks and the BAH domain are required to maintain expression levels of a specific set of genes, including several involved in cell identity and survival. This study identifies in vivo roles for specific ASH1 domains in mitotic binding, gene regulation, and survival that are distinct from its functions as a histone methyltransferase.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 2-3","pages":"215-234"},"PeriodicalIF":1.6,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00762-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39268855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Sex differences in the meiotic behavior of an XX sex chromosome pair in males and females of the mole vole Ellobius tancrei: turning an X into a Y chromosome? 雄性和雌性地鼠XX性染色体对减数分裂行为的性别差异:把X染色体变成Y染色体?
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-09-01 Epub Date: 2021-04-06 DOI: 10.1007/s00412-021-00755-y
Ana Gil-Fernández, Sergey Matveevsky, Marta Martín-Ruiz, Marta Ribagorda, María Teresa Parra, Alberto Viera, Julio S Rufas, Oxana Kolomiets, Irina Bakloushinskaya, Jesús Page
{"title":"Sex differences in the meiotic behavior of an XX sex chromosome pair in males and females of the mole vole Ellobius tancrei: turning an X into a Y chromosome?","authors":"Ana Gil-Fernández,&nbsp;Sergey Matveevsky,&nbsp;Marta Martín-Ruiz,&nbsp;Marta Ribagorda,&nbsp;María Teresa Parra,&nbsp;Alberto Viera,&nbsp;Julio S Rufas,&nbsp;Oxana Kolomiets,&nbsp;Irina Bakloushinskaya,&nbsp;Jesús Page","doi":"10.1007/s00412-021-00755-y","DOIUrl":"https://doi.org/10.1007/s00412-021-00755-y","url":null,"abstract":"<p><p>Sex determination in mammals is usually provided by a pair of chromosomes, XX in females and XY in males. Mole voles of the genus Ellobius are exceptions to this rule. In Ellobius tancrei, both males and females have a pair of XX chromosomes that are indistinguishable from each other in somatic cells. Nevertheless, several studies on Ellobius have reported that the two X chromosomes may have a differential organization and behavior during male meiosis. It has not yet been demonstrated if these differences also appear in female meiosis. To test this hypothesis, we have performed a comparative study of chromosome synapsis, recombination, and histone modifications during male and female meiosis in E. tancrei. We observed that synapsis between the two X chromosomes is limited to the short distal (telomeric) regions of the chromosomes in males, leaving the central region completely unsynapsed. This uneven behavior of sex chromosomes during male meiosis is accompanied by structural modifications of one of the X chromosomes, whose axial element tends to appear fragmented, accumulates the heterochromatin mark H3K9me3, and is associated with a specific nuclear body that accumulates epigenetic marks and proteins such as SUMO-1 and centromeric proteins but excludes others such as H3K4me, ubiH2A, and γH2AX. Unexpectedly, sex chromosome synapsis is delayed in female meiosis, leaving the central region unsynapsed during early pachytene. This region accumulates γH2AX up to the stage in which synapsis is completed. However, there are no structural or epigenetic differences similar to those found in males in either of the two X chromosomes. Finally, we observed that recombination in the sex chromosomes is restricted in both sexes. In males, crossover-associated MLH1 foci are located exclusively in the distal regions, indicating incipient differentiation of one of the sex chromosomes into a neo-Y. Notably, in female meiosis, the central region of the X chromosome is also devoid of MLH1 foci, revealing a lack of recombination, possibly due to insufficient homology. Overall, these results reveal new clues about the origin and evolution of sex chromosomes.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 2-3","pages":"113-131"},"PeriodicalIF":1.6,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00755-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25568621","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 7
Interphase epichromatin: last refuge for the 30-nm chromatin fiber? 间期外染色质:30纳米染色质纤维的最后避难所?
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-09-01 Epub Date: 2021-06-05 DOI: 10.1007/s00412-021-00759-8
Peng Xu, Julia Mahamid, Marco Dombrowski, Wolfgang Baumeister, Ada L Olins, Donald E Olins
{"title":"Interphase epichromatin: last refuge for the 30-nm chromatin fiber?","authors":"Peng Xu,&nbsp;Julia Mahamid,&nbsp;Marco Dombrowski,&nbsp;Wolfgang Baumeister,&nbsp;Ada L Olins,&nbsp;Donald E Olins","doi":"10.1007/s00412-021-00759-8","DOIUrl":"https://doi.org/10.1007/s00412-021-00759-8","url":null,"abstract":"<p><p>\"Interphase epichromatin\" describes the surface of chromatin located adjacent to the interphase nuclear envelope. It was discovered in 2011 using a bivalent anti-nucleosome antibody (mAb PL2-6), now known to be directed against the nucleosome acidic patch. The molecular structure of interphase epichromatin is unknown, but is thought to be heterochromatic with a high density of \"exposed\" acidic patches. In the 1960s, transmission electron microscopy of fixed, dehydrated, sectioned, and stained inactive chromatin revealed \"unit threads,\" frequently organized into parallel arrays at the nuclear envelope, which were interpreted as regular helices with ~ 30-nm center-to-center distance. Also observed in certain cell types, the nuclear envelope forms a \"sandwich\" around a layer of closely packed unit threads (ELCS, envelope-limited chromatin sheets). Discovery of the nucleosome in 1974 led to revised helical models of chromatin. But these models became very controversial and the existence of in situ 30-nm chromatin fibers has been challenged. Development of cryo-electron microscopy (Cryo-EM) gave hope that in situ chromatin fibers, devoid of artifacts, could be structurally defined. Combining a contrast-enhancing phase plate and cryo-electron tomography (Cryo-ET), it is now possible to visualize chromatin in a \"close-to-native\" situation. ELCS are particularly interesting to study by Cryo-ET. The chromatin sheet appears to have two layers of ~ 30-nm chromatin fibers arranged in a criss-crossed pattern. The chromatin in ELCS is continuous with adjacent interphase epichromatin. It appears that hydrated ~ 30-nm chromatin fibers are quite rare in most cells, possibly confined to interphase epichromatin at the nuclear envelope.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 2-3","pages":"91-102"},"PeriodicalIF":1.6,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00759-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39081678","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Unravelling HP1 functions: post-transcriptional regulation of stem cell fate. 揭示HP1功能:干细胞命运的转录后调控。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-09-01 Epub Date: 2021-06-15 DOI: 10.1007/s00412-021-00760-1
Assunta Maria Casale, Ugo Cappucci, Lucia Piacentini
{"title":"Unravelling HP1 functions: post-transcriptional regulation of stem cell fate.","authors":"Assunta Maria Casale,&nbsp;Ugo Cappucci,&nbsp;Lucia Piacentini","doi":"10.1007/s00412-021-00760-1","DOIUrl":"https://doi.org/10.1007/s00412-021-00760-1","url":null,"abstract":"<p><p>Heterochromatin protein 1 (HP1) is a non-histone chromosomal protein first identified in Drosophila as a major component of constitutive heterochromatin, required for stable epigenetic gene silencing in many species including humans. Over the years, several studies have highlighted additional roles of HP1 in different cellular processes including telomere maintenance, DNA replication and repair, chromosome segregation and, surprisingly, positive regulation of gene expression. In this review, we briefly summarize past research and recent results supporting the unexpected and emerging role of HP1 in activating gene expression. In particular, we discuss the role of HP1 in post-transcriptional regulation of mRNA processing because it has proved decisive in the control of germline stem cells homeostasis in Drosophila and has certainly added a new dimension to our understanding on HP1 targeting and functions in epigenetic regulation of stem cell behaviour.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 2-3","pages":"103-111"},"PeriodicalIF":1.6,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00760-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39231619","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
BAC- and oligo-FISH mapping reveals chromosome evolution among Vigna angularis, V. unguiculata, and Phaseolus vulgaris. BAC-和oligo-FISH图谱揭示了角菖蒲、蹄菖蒲和菜豆的染色体进化。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-09-01 Epub Date: 2021-04-28 DOI: 10.1007/s00412-021-00758-9
Lívia do Vale Martins, Fernanda de Oliveira Bustamante, Ana Rafaela da Silva Oliveira, Antônio Félix da Costa, Lidiane de Lima Feitoza, Qihua Liang, Hainan Zhao, Ana Maria Benko-Iseppon, María Muñoz-Amatriaín, Andrea Pedrosa-Harand, Jiming Jiang, Ana Christina Brasileiro-Vidal
{"title":"BAC- and oligo-FISH mapping reveals chromosome evolution among Vigna angularis, V. unguiculata, and Phaseolus vulgaris.","authors":"Lívia do Vale Martins,&nbsp;Fernanda de Oliveira Bustamante,&nbsp;Ana Rafaela da Silva Oliveira,&nbsp;Antônio Félix da Costa,&nbsp;Lidiane de Lima Feitoza,&nbsp;Qihua Liang,&nbsp;Hainan Zhao,&nbsp;Ana Maria Benko-Iseppon,&nbsp;María Muñoz-Amatriaín,&nbsp;Andrea Pedrosa-Harand,&nbsp;Jiming Jiang,&nbsp;Ana Christina Brasileiro-Vidal","doi":"10.1007/s00412-021-00758-9","DOIUrl":"https://doi.org/10.1007/s00412-021-00758-9","url":null,"abstract":"<p><p>Cytogenomic resources have accelerated synteny and chromosome evolution studies in plant species, including legumes. Here, we established the first cytogenetic map of V. angularis (Va, subgenus Ceratotropis) and compared this new map with those of V. unguiculata (Vu, subgenus Vigna) and P. vulgaris (Pv) by BAC-FISH and oligopainting approaches. We mapped 19 Vu BACs and 35S rDNA probes to the 11 chromosome pairs of Va, Vu, and Pv. Vigna angularis shared a high degree of macrosynteny with Vu and Pv, with five conserved syntenic chromosomes. Additionally, we developed two oligo probes (Pv2 and Pv3) used to paint Vigna orthologous chromosomes. We confirmed two reciprocal translocations (chromosomes 2 and 3 and 1 and 8) that have occurred after the Vigna and Phaseolus divergence (~9.7 Mya). Besides, two inversions (2 and 4) and one translocation (1 and 5) have occurred after Vigna and Ceratotropis subgenera separation (~3.6 Mya). We also observed distinct oligopainting patterns for chromosomes 2 and 3 of Vigna species. Both Vigna species shared similar major rearrangements compared to Pv: one translocation (2 and 3) and one inversion (chromosome 3). The sequence synteny identified additional inversions and/or intrachromosomal translocations involving pericentromeric regions of both orthologous chromosomes. We propose chromosomes 2 and 3 as hotspots for chromosomal rearrangements and de novo centromere formation within and between Vigna and Phaseolus. Our BAC- and oligo-FISH mapping contributed to physically trace the chromosome evolution of Vigna and Phaseolus and its application in further studies of both genera.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 2-3","pages":"133-147"},"PeriodicalIF":1.6,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00758-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38916377","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 12
Deletion of the XIST promoter from the human inactive X chromosome compromises polycomb heterochromatin maintenance. 从人类无活性X染色体上删除XIST启动子会损害多梳异染色质的维持。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-09-01 Epub Date: 2021-03-21 DOI: 10.1007/s00412-021-00754-z
Natalia Westervelt, Andrea Yoest, Sadia Sayed, Marina Von Zimmerman, Kelly Kaps, Brian P Chadwick
{"title":"Deletion of the XIST promoter from the human inactive X chromosome compromises polycomb heterochromatin maintenance.","authors":"Natalia Westervelt,&nbsp;Andrea Yoest,&nbsp;Sadia Sayed,&nbsp;Marina Von Zimmerman,&nbsp;Kelly Kaps,&nbsp;Brian P Chadwick","doi":"10.1007/s00412-021-00754-z","DOIUrl":"https://doi.org/10.1007/s00412-021-00754-z","url":null,"abstract":"<p><p>Silencing most gene expression from all but one X chromosome in female mammals provides a means to overcome X-linked gene expression imbalances with males. Central to establishing gene silencing on the inactivated X chromosome are the actions of the long non-coding RNA XIST that triggers the repackaging of the chosen X into facultative heterochromatin. While understanding the mechanisms through which XIST expression is regulated and mediates its affects has been a major focus of research since its discovery, less is known about the role XIST plays in maintaining chromatin at the human inactive X chromosome (Xi). Here, we use genome engineering to delete the promoter of XIST to knockout expression from the Xi in non-cancerous diploid human somatic cells. Although some heterochromatin features exhibit limited change at the Xi, two of those assessed showed significant reductions including histone H2A monoubiquitylation at lysine 119 and histone H3 trimethylation at lysine 27, both of which are covalent histone modifications catalyzed by the polycomb repressive complexes 1 and 2 respectively. Coupled with these reductions, we observed an occasional gain of euchromatin signatures on Xp, but despite these signs of chromatin instability, we did not observe appreciable changes in the reactivation of genes from the Xi. Collectively, these data are consistent with maintenance of dosage compensation at the Xi involving multiple redundant layers of gene silencing.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 2-3","pages":"177-197"},"PeriodicalIF":1.6,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00754-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25509164","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Linear elements are stable structures along the chromosome axis in fission yeast meiosis. 在分裂酵母减数分裂中,线形因子是沿染色体轴的稳定结构。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-09-01 Epub Date: 2021-04-07 DOI: 10.1007/s00412-021-00757-w
Da-Qiao Ding, Atsushi Matsuda, Kasumi Okamasa, Yasushi Hiraoka
{"title":"Linear elements are stable structures along the chromosome axis in fission yeast meiosis.","authors":"Da-Qiao Ding,&nbsp;Atsushi Matsuda,&nbsp;Kasumi Okamasa,&nbsp;Yasushi Hiraoka","doi":"10.1007/s00412-021-00757-w","DOIUrl":"https://doi.org/10.1007/s00412-021-00757-w","url":null,"abstract":"<p><p>The structure of chromosomes dramatically changes upon entering meiosis to ensure the successful progression of meiosis-specific events. During this process, a multilayer proteinaceous structure called a synaptonemal complex (SC) is formed in many eukaryotes. However, in the fission yeast Schizosaccharomyces pombe, linear elements (LinEs), which are structures related to axial elements of the SC, form on the meiotic cohesin-based chromosome axis. The structure of LinEs has been observed using silver-stained electron micrographs or in immunofluorescence-stained spread nuclei. However, the fine structure of LinEs and their dynamics in intact living cells remain to be elucidated. In this study, we performed live cell imaging with wide-field fluorescence microscopy as well as 3D structured illumination microscopy (3D-SIM) of the core components of LinEs (Rec10, Rec25, Rec27, Mug20) and a linE-binding protein Hop1. We found that LinEs form along the chromosome axis and elongate during meiotic prophase. 3D-SIM microscopy revealed that Rec10 localized to meiotic chromosomes in the absence of other LinE proteins, but shaped into LinEs only in the presence of all three other components, the Rec25, Rec27, and Mug20. Elongation of LinEs was impaired in double-strand break-defective rec12<sup>-</sup> cells. The structure of LinEs persisted after treatment with 1,6-hexanediol and showed slow fluorescence recovery from photobleaching. These results indicate that LinEs are stable structures resembling axial elements of the SC.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 2-3","pages":"149-162"},"PeriodicalIF":1.6,"publicationDate":"2021-09-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00757-w","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25567176","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Chromosome Y pericentric heterochromatin is a primary target of HSF1 in male cells. Y染色体外中心异染色质是HSF1在男性细胞中的主要靶点。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-03-01 Epub Date: 2021-02-06 DOI: 10.1007/s00412-021-00751-2
Jessica Penin, Solenne Dufour, Virginie Faure, Sabrina Fritah, Daphné Seigneurin-Berny, Edwige Col, André Verdel, Claire Vourc'h
{"title":"Chromosome Y pericentric heterochromatin is a primary target of HSF1 in male cells.","authors":"Jessica Penin,&nbsp;Solenne Dufour,&nbsp;Virginie Faure,&nbsp;Sabrina Fritah,&nbsp;Daphné Seigneurin-Berny,&nbsp;Edwige Col,&nbsp;André Verdel,&nbsp;Claire Vourc'h","doi":"10.1007/s00412-021-00751-2","DOIUrl":"https://doi.org/10.1007/s00412-021-00751-2","url":null,"abstract":"<p><p>The heat shock factor 1 (HSF1)-dependent transcriptional activation of human pericentric heterochromatin in heat-shocked cells is the most striking example of transcriptional activation of heterochromatin. Until now, pericentric heterochromatin of chromosome 9 has been identified as the primary target of HSF1, in both normal and tumor heat-shocked cells. Transcriptional awakening of this large genomic region results in the nuclear accumulation of satellite III (SATIII) noncoding RNAs (ncRNAs) and the formation in cis of specific structures known as nuclear stress bodies (nSBs). Here, we show that, in four different male cell lines, including primary human fibroblasts and amniocytes, pericentric heterochromatin of chromosome Y can also serve as a unique primary site of HSF1-dependent heterochromatin transcriptional activation, production of SATIII ncRNA, and nucleation of nuclear stress bodies (nSBs) upon heat shock. Our observation suggests that the chromosomal origin of SATIII transcripts in cells submitted to heat shock is not a determinant factor as such, but that transcription of SATIII repetitive units or the SATIII ncRNA molecules is the critical element of HSF1-dependent transcription activation of constitutive heterochromatin.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 1","pages":"53-60"},"PeriodicalIF":1.6,"publicationDate":"2021-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1007/s00412-021-00751-2","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25337168","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Imaging assay to probe the role of telomere length shortening on telomere-gene interactions in single cells. 成像分析,以探测端粒长度缩短在单细胞中端粒-基因相互作用中的作用。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-03-01 Epub Date: 2021-02-08 DOI: 10.1007/s00412-020-00747-4
Ning Zhang, Yanhui Li, Tsung-Po Lai, Jerry W Shay, Gaudenz Danuser
{"title":"Imaging assay to probe the role of telomere length shortening on telomere-gene interactions in single cells.","authors":"Ning Zhang, Yanhui Li, Tsung-Po Lai, Jerry W Shay, Gaudenz Danuser","doi":"10.1007/s00412-020-00747-4","DOIUrl":"10.1007/s00412-020-00747-4","url":null,"abstract":"<p><p>Telomeres are repetitive non-coding nucleotide sequences (TTAGGGn) capping the ends of chromosomes. Progressive telomere shortening with increasing age has been associated with shifts in gene expression through models such as the telomere position effect (TPE), which suggests reduced interference of the telomere with transcriptional activity of increasingly more distant genes. A modification of the TPE model, referred to as Telomere Position Effects over Long Distance (TPE-OLD), explains why some genes 1-10 MB from a telomere are still affected by TPE, but genes closer to the telomere are not. Here, we describe an imaging approach to systematically examine the occurrence of TPE-OLD at the single cell level. Compared to existing methods, the pipeline allows rapid analysis of hundreds to thousands of cells, which is necessary to establish TPE-OLD as an acceptable mechanism of gene expression regulation. We examined two human genes, ISG15 and TERT, for which TPE-OLD has been described before. For both genes, we found less interaction with the telomere on the same chromosome in old cells compared to young cells; and experimentally elongated telomeres in old cells rescued the level of telomere interaction for both genes. However, the dependency of the interactions on the age progression from young to old cells varied. One model for the differences between ISG15 and TERT may relate to the markedly distinct interstitial telomeric sequence arrangement in the two genes. Overall, this provides a strong rationale for the role of telomere length shortening in the regulation of gene expression.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 1","pages":"61-73"},"PeriodicalIF":1.6,"publicationDate":"2021-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889534/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25346099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ectopic expression of pericentric HSATII RNA results in nuclear RNA accumulation, MeCP2 recruitment, and cell division defects. 同中心 HSATII RNA 的异位表达会导致核 RNA 积累、MeCP2 募集和细胞分裂缺陷。
IF 1.6 4区 生物学
Chromosoma Pub Date : 2021-03-01 Epub Date: 2021-02-13 DOI: 10.1007/s00412-021-00753-0
Catherine C Landers, Christina A Rabeler, Emily K Ferrari, Lia R D'Alessandro, Diana D Kang, Jessica Malisa, Safia M Bashir, Dawn M Carone
{"title":"Ectopic expression of pericentric HSATII RNA results in nuclear RNA accumulation, MeCP2 recruitment, and cell division defects.","authors":"Catherine C Landers, Christina A Rabeler, Emily K Ferrari, Lia R D'Alessandro, Diana D Kang, Jessica Malisa, Safia M Bashir, Dawn M Carone","doi":"10.1007/s00412-021-00753-0","DOIUrl":"10.1007/s00412-021-00753-0","url":null,"abstract":"<p><p>Within the pericentric regions of human chromosomes reside large arrays of tandemly repeated satellite sequences. Expression of the human pericentric satellite HSATII is prevented by extensive heterochromatin silencing in normal cells, yet in many cancer cells, HSATII RNA is aberrantly expressed and accumulates in large nuclear foci in cis. Expression and aggregation of HSATII RNA in cancer cells is concomitant with recruitment of key chromatin regulatory proteins including methyl-CpG binding protein 2 (MeCP2). While HSATII expression has been observed in a wide variety of cancer cell lines and tissues, the effect of its expression is unknown. We tested the effect of stable expression of HSATII RNA within cells that do not normally express HSATII. Ectopic HSATII expression in HeLa and primary fibroblast cells leads to focal accumulation of HSATII RNA in cis and triggers the accumulation of MeCP2 onto nuclear HSATII RNA bodies. Further, long-term expression of HSATII RNA leads to cell division defects including lagging chromosomes, chromatin bridges, and other chromatin defects. Thus, expression of HSATII RNA in normal cells phenocopies its nuclear accumulation in cancer cells and allows for the characterization of the cellular events triggered by aberrant expression of pericentric satellite RNA.</p>","PeriodicalId":10248,"journal":{"name":"Chromosoma","volume":"130 1","pages":"75-90"},"PeriodicalIF":1.6,"publicationDate":"2021-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7889552/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25372872","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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