New CropsPub Date : 2024-11-28DOI: 10.1016/j.ncrops.2024.100061
Wei Zhang , Shihui Li , Zaihui Zhou , Weihua Ma
{"title":"The development and prospects of insect-resistant crops expressing double-strand RNAs","authors":"Wei Zhang , Shihui Li , Zaihui Zhou , Weihua Ma","doi":"10.1016/j.ncrops.2024.100061","DOIUrl":"10.1016/j.ncrops.2024.100061","url":null,"abstract":"<div><div>RNA interference (RNAi) triggered by double-stranded RNA (dsRNA) has shown effectiveness against many major agricultural insect pests worldwide. With its remarkable specificity and high efficiency, RNAi holds great promise for modern pest management in agriculture. Modern plant biotechnology has advanced the use of plant-mediated RNAi for pest control, known as host-induced gene silencing (HIGS), which specifically targets essential genes in pest species. It has now been over 20 years since HIGS was first introduced. This review will summarize recent progress in developing insect-resistant crops that express dsRNA, and will discuss the future potential of this technology in agricultural pest management.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100061"},"PeriodicalIF":0.0,"publicationDate":"2024-11-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143562917","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-11-14DOI: 10.1016/j.ncrops.2024.100058
Ying Chen, Tiantian Ye, Shaoqing Tang, Peisong Hu
{"title":"Facing chilling, kinase-transcription factors relay cold tolerance signals","authors":"Ying Chen, Tiantian Ye, Shaoqing Tang, Peisong Hu","doi":"10.1016/j.ncrops.2024.100058","DOIUrl":"10.1016/j.ncrops.2024.100058","url":null,"abstract":"<div><div>Rice (<em>Oryza sativa</em> L.), native to tropical regions, is highly vulnerable to low temperatures, limiting its geographical range and posing a substantial threat to global rice production. Our understanding of the molecular basis for cold tolerance in rice remains incomplete. A recent study identified OsERF52, an AP2/ERF transcription factor, as a new upstream regulator of <em>OsCBF</em>s, through a mutant screening approach. Under cold stress, phosphorylation of OsERF52 at Ser261 by OsSAPK9 not only stabilizes the protein but also enhances its interaction with IPA1 and OsICE1/OsbHLH002, leading to an increase in <em>OsCBF</em> transcription and enhanced chilling tolerance. Importantly, plants with a base-edited <em>OsERF52</em><sup><em>S261D</em></sup><em>-3HA</em> allele show improved cold resistance without yield loss under normal conditions. After chilling stress at the booting stage, these plants had significantly higher seed-setting rates than controls. These findings establish OsERF52 as a key regulator of <em>OsCBF</em>s, highlight a novel kinase-transcription factor complex that modulates cold response, and provide valuable genetic resources for breeding cold-tolerant rice varieties.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100058"},"PeriodicalIF":0.0,"publicationDate":"2024-11-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143140912","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-11-13DOI: 10.1016/j.ncrops.2024.100059
Yongfeng Hu , Chao He , Xin Gong , Huan Xu , Xiaofei Chen , Yuning Shen , Gongjian Zeng , Xiner Qin , Zhuying Deng , Zhengquan He , Xiangling Shen
{"title":"Epigenomic studies in sorghum reveal differential enrichment of multiple histone marks at clade A PP2C genes in response to drought","authors":"Yongfeng Hu , Chao He , Xin Gong , Huan Xu , Xiaofei Chen , Yuning Shen , Gongjian Zeng , Xiner Qin , Zhuying Deng , Zhengquan He , Xiangling Shen","doi":"10.1016/j.ncrops.2024.100059","DOIUrl":"10.1016/j.ncrops.2024.100059","url":null,"abstract":"<div><div>Epigenetic regulation is essential for plant development and stress responses, as numerous stress-responsive genes are modulated epigenetically. However, most research has focused on individual histone marks. This study expands on previous work by examining the genome-wide profiles of seven histone marks (H3K9ac, H3K27ac, H3K4me3, H3K36me3, H3K27me3, H2A.Z, and H3K4me2) in sorghum leaves and roots under PEG-induced drought stress. Results revealed that five histone marks (excluding H3K36me3 and H3K27me3) were significantly associated with drought-responsive gene expression. The differential enrichment of these marks may enhance the induction of drought-responsive genes. Specifically, a subset of genes showed multiple histone marks' differential enrichment, with most clade A <em>PP2C</em> genes exhibiting enrichment for four marks after PEG treatment. This suggests a critical role for robust <em>PP2C</em> gene induction in sorghum’s drought response. Additionally, promoter <em>cis</em>-element analysis identified ERF family transcription factors as potential mediators of histone mark enrichment under drought conditions, providing new insights into the interaction between epigenetic modifications and transcriptional regulation in plant stress responses.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100059"},"PeriodicalIF":0.0,"publicationDate":"2024-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143097920","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Genomic and modern biotechnological strategies for enhancing salt tolerance in crops","authors":"Jingya Yuan, Hongwei Cao, Wenlang Qin, Shijie Yang, Daiwei Zhang, Lin Zhu, Huiling Song, Qun Zhang","doi":"10.1016/j.ncrops.2024.100057","DOIUrl":"10.1016/j.ncrops.2024.100057","url":null,"abstract":"<div><div>Extreme climate change and rapid population growth present significant challenges to global food security. Among these challenges, salt stress is a critical abiotic factor adversely affecting agricultural productivity worldwide. Plants respond to salinity through mechanisms such as ion homeostasis, osmoregulation, activation of antioxidant defense systems, and phytohormone signaling, all of which serve to mitigate ion toxicity and osmotic stress. Despite ongoing efforts, advancements in the breeding and rigorous selection of salt-tolerant crops have been limited. Furthermore, the full potential of genetic diversity found in crop landraces and their wild relatives remains largely unexplored. Investigating novel genes from wild relatives of crops presents a promising opportunity to identify superior salt-tolerant haplotypes. Genomic and molecular approaches for precision breeding are well-positioned to expedite the development of salt-tolerant cultivars. Consequently, this review aims to investigate novel salt-tolerant genes and the application of modern biotechnological tools to enhance salinity tolerance in crops.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100057"},"PeriodicalIF":0.0,"publicationDate":"2024-11-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143141316","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-10-20DOI: 10.1016/j.ncrops.2024.100056
Liangfa Wang , Juan Li , Baiyu Yuan , Huiyu Zhang , Yuan Lin , Jiong Wan , Jiawen Zhao , Qiyue Wang , Xiaolong Ju , Xiaoyang Chen , Xuehai Zhang , Yadong Xue , Rui Song , Zhiyuan Fu , Hongbing Luo , Dong Ding , Jihua Tang
{"title":"Unraveling the genetic mechanisms of maize ear diameter heterosis","authors":"Liangfa Wang , Juan Li , Baiyu Yuan , Huiyu Zhang , Yuan Lin , Jiong Wan , Jiawen Zhao , Qiyue Wang , Xiaolong Ju , Xiaoyang Chen , Xuehai Zhang , Yadong Xue , Rui Song , Zhiyuan Fu , Hongbing Luo , Dong Ding , Jihua Tang","doi":"10.1016/j.ncrops.2024.100056","DOIUrl":"10.1016/j.ncrops.2024.100056","url":null,"abstract":"<div><div>Hybridization has long been a crucial strategy for breeders aiming to develop high-yield crops vital for global food security. However, the exact molecular mechanisms driving heterosis (hybrid vigor) remain a topic of debate. Maize (<em>Zea mays</em>), which demonstrates pronounced heterosis, serves as an ideal model for studying this phenomenon. In our study, we carefully measured phenotypic changes in ear diameter, tracing its development from the inflorescence meristem (IM) to the floral meristem (FM) stages. Our findings revealed a complex progression: the hybrid's ear diameter followed an additive pattern during the IM and spikelet pair meristem (SPM) stages, shifted to incomplete dominance at the spikelet meristem (SM) stage, and ultimately displayed over-dominance at the FM stage. Notably, significant phenotypic changes occurred during the SM stage with gene expression primarily showing non-additive patterns. Gene Ontology (GO) enrichment analysis highlighted the role of cell redox homeostasis genes, which exhibited over-dominant expression in hybrids, as key contributors to heterosis. Furthermore, we identified a distinct gene expression category—dominant maternal or paternal gene expression in F<sub>1</sub> hybrids (DMP)—characterized by exclusive expression in the hybrid and one parent, while remaining inactive in the other. This category of DMP genes plays a pivotal role in shaping the diverse gene expression patterns observed in hybrids, distinguishing them from their parental lines. In conclusion, the widespread occurrence of non-additive expression seems to enhance the efficiency of biological processes and energy distribution in hybrids, ultimately driving the manifestation of heterosis.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100056"},"PeriodicalIF":0.0,"publicationDate":"2024-10-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142744357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-10-12DOI: 10.1016/j.ncrops.2024.100055
Like Chen , Kejian Wang , Chun Wang
{"title":"Meiosis in plants: From understanding to manipulation","authors":"Like Chen , Kejian Wang , Chun Wang","doi":"10.1016/j.ncrops.2024.100055","DOIUrl":"10.1016/j.ncrops.2024.100055","url":null,"abstract":"<div><div>Meiosis is an indispensable process in sexual reproduction, involving the recombination of genetic information and the production of haploid gamete cells through the segregation of sister chromatids. In crop breeding, elucidating the molecular mechanisms of meiosis is fundamental for manipulating recombination frequency and distribution, as well as for generating polyploid plants. In this review, we summarize current knowledge on the processes and genes involved in genetic recombination during Meiosis I, and the regulatory mechanisms of the second meiotic division during Meiosis II. Furthermore, we have outlined the breeding innovations achieved through the manipulation of meiosis, including the enhancement of genetic recombination frequency, alteration of recombination distribution, construction of artificial apomixis systems, and implementation of autopolyploid progressive heterosis (APH). This knowledge forms the cornerstone for further crop breeding applications, ultimately contributing to the optimization of crop yield and quality.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100055"},"PeriodicalIF":0.0,"publicationDate":"2024-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142657736","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-26DOI: 10.1016/j.ncrops.2024.100054
Yujie Wang , Yi He , Yahui Zhai , Salim Al-Babili , Yuchen Miao , Kun-Peng Jia
{"title":"Perspectives on developing natural colored cotton through carotenoid biofortification","authors":"Yujie Wang , Yi He , Yahui Zhai , Salim Al-Babili , Yuchen Miao , Kun-Peng Jia","doi":"10.1016/j.ncrops.2024.100054","DOIUrl":"10.1016/j.ncrops.2024.100054","url":null,"abstract":"<div><div>Cotton is a fundamental component of the textile industry, dominating natural fiber production globally. Besides textiles, cotton plays diverse roles such as producing cooking oil, seed feed, and even medicinal applications. Naturally colored cotton (NCC), featuring pigments derived from phenylpropanoids, offers a spectrum of hues in brown and green categories, providing an environmentally friendly and dye-free option. Despite the advantages of NCC, challenges such as limited superior NCC germplasm, coupled with lower strength, yield, pigment instability, and color constraints, have hindered NCC cultivar development. Recent advancements include developing pink cotton through betalain pathway engineering, highlighting biotechnological avenues for enhancing NCC cultivars. Carotenoids, diverse natural pigments with distinctive yellow, orange, and reddish hues, are essential for photosynthesis and serve as attractants for pollination in plants. Additionally, they are indispensable for human health as precursors of vitamin A and potent antioxidants, revolutionizing nutrient fortification in numerous crops. This review underscores advancements in NCC and carotenoid biofortification in crops, advocating genetic engineering via carotenoid biofortification in fibers to expand NCC’s color spectrum and revolutionize fiber development.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100054"},"PeriodicalIF":0.0,"publicationDate":"2024-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-24DOI: 10.1016/j.ncrops.2024.100053
Ruiqi Sun , Lele Li , Yan Li , Huanhuan He , Zhaojun Ding , Cuiling Li
{"title":"Genome-wide characterization, identification, and isolation of auxin response factor (ARF) gene family in maize","authors":"Ruiqi Sun , Lele Li , Yan Li , Huanhuan He , Zhaojun Ding , Cuiling Li","doi":"10.1016/j.ncrops.2024.100053","DOIUrl":"10.1016/j.ncrops.2024.100053","url":null,"abstract":"<div><div>Auxin response factors (ARFs) are key regulators of numerous aspects of plant growth and development through mediating auxin signaling. In this study, we conducted a comprehensive genome-wide analysis of <em>ZmARF</em>s to identify and validate all auxin response factor genes in maize. These <em>ZmARF</em> genes were categorized into four distinct groups (I-IV) based on phylogenetic analysis, revealing seven sister pairs. We presented detailed information on gene sequences, structures, chromosome locations, and conserved motifs of ZmARFs. Through transient expression assays, we identified transcriptional activators or repressors among ZmARFs. Notably, our study demonstrated, for the first time, that ZmARF3 acts as a positive regulator of adventitious roots development in maize. This study not only provides basic insights into the maize ARF gene family but also sheds light on the specific functions of ZmARF3, paving the way for a more precise understanding of ZmARFs' roles in plant growth and development in maize.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100053"},"PeriodicalIF":0.0,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142554776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-21DOI: 10.1016/j.ncrops.2024.100052
Gaofeng Liu, Zixin Zhang
{"title":"Precise control of falling flowers and fruits is a key part of improving quality and efficiency","authors":"Gaofeng Liu, Zixin Zhang","doi":"10.1016/j.ncrops.2024.100052","DOIUrl":"10.1016/j.ncrops.2024.100052","url":null,"abstract":"<div><div>The strategic implementation of measures to minimize and optimize the timing of fruit drop plays a critical role in enhancing both quality and efficiency. Recent studies in <em>Arabidopsis</em> have substantiated the role of a complex kinase axis, centered on BR-SIGNALING KINASE 1 (BSK1), which regulates organ abscission in plants. These findings revealed that BSK proteins may act as scaffolds for assembling HAESA/HAESA-LIKE2 (HAE/HSL2) and YODA (YDA), facilitating YDA activation by plasma membrane receptors. Once activated, YDA initiates the mitogen-activated protein kinase (MAPK) phosphorylation cascade, which ultimately triggers abscission. Furthermore, research suggests that this process involves a diverse range of transcriptional regulatory mechanisms. The findings of this study offer valuable insights for investigating similar processes in other crops, significantly advancing the field of plant abscission research.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":"2 ","pages":"Article 100052"},"PeriodicalIF":0.0,"publicationDate":"2024-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532676","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}