New CropsPub Date : 2024-10-12DOI: 10.1016/j.ncrops.2024.100055
Like Chen , Kejian Wang , Chun Wang
{"title":"Meiosis in plants: From understanding to manipulation","authors":"Like Chen , Kejian Wang , Chun Wang","doi":"10.1016/j.ncrops.2024.100055","DOIUrl":"10.1016/j.ncrops.2024.100055","url":null,"abstract":"<div><div>Meiosis is an indispensable process in sexual reproduction, involving the recombination of genetic information and the production of haploid gamete cells through the segregation of sister chromatids. In crop breeding, elucidating the molecular mechanisms of meiosis is fundamental for manipulating recombination frequency and distribution, as well as for generating polyploid plants. In this review, we summarize current knowledge on the processes and genes involved in genetic recombination during Meiosis I, and the regulatory mechanisms of the second meiotic division during Meiosis II. Furthermore, we have outlined the breeding innovations achieved through the manipulation of meiosis, including the enhancement of genetic recombination frequency, alteration of recombination distribution, construction of artificial apomixis systems, and implementation of autopolyploid progressive heterosis (APH). This knowledge forms the cornerstone for further crop breeding applications, ultimately contributing to the optimization of crop yield and quality.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-10-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142657736","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-26DOI: 10.1016/j.ncrops.2024.100054
Yujie Wang , Yi He , Yahui Zhai , Salim Al-Babili , Yuchen Miao , Kun-Peng Jia
{"title":"Perspectives on developing natural colored cotton through carotenoid biofortification","authors":"Yujie Wang , Yi He , Yahui Zhai , Salim Al-Babili , Yuchen Miao , Kun-Peng Jia","doi":"10.1016/j.ncrops.2024.100054","DOIUrl":"10.1016/j.ncrops.2024.100054","url":null,"abstract":"<div><div>Cotton is a fundamental component of the textile industry, dominating natural fiber production globally. Besides textiles, cotton plays diverse roles such as producing cooking oil, seed feed, and even medicinal applications. Naturally colored cotton (NCC), featuring pigments derived from phenylpropanoids, offers a spectrum of hues in brown and green categories, providing an environmentally friendly and dye-free option. Despite the advantages of NCC, challenges such as limited superior NCC germplasm, coupled with lower strength, yield, pigment instability, and color constraints, have hindered NCC cultivar development. Recent advancements include developing pink cotton through betalain pathway engineering, highlighting biotechnological avenues for enhancing NCC cultivars. Carotenoids, diverse natural pigments with distinctive yellow, orange, and reddish hues, are essential for photosynthesis and serve as attractants for pollination in plants. Additionally, they are indispensable for human health as precursors of vitamin A and potent antioxidants, revolutionizing nutrient fortification in numerous crops. This review underscores advancements in NCC and carotenoid biofortification in crops, advocating genetic engineering via carotenoid biofortification in fibers to expand NCC’s color spectrum and revolutionize fiber development.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532677","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-24DOI: 10.1016/j.ncrops.2024.100053
Ruiqi Sun , Lele Li , Yan Li , Huanhuan He , Zhaojun Ding , Cuiling Li
{"title":"Genome-wide characterization, identification, and isolation of auxin response factor (ARF) gene family in maize","authors":"Ruiqi Sun , Lele Li , Yan Li , Huanhuan He , Zhaojun Ding , Cuiling Li","doi":"10.1016/j.ncrops.2024.100053","DOIUrl":"10.1016/j.ncrops.2024.100053","url":null,"abstract":"<div><div>Auxin response factors (ARFs) are key regulators of numerous aspects of plant growth and development through mediating auxin signaling. In this study, we conducted a comprehensive genome-wide analysis of <em>ZmARF</em>s to identify and validate all auxin response factor genes in maize. These <em>ZmARF</em> genes were categorized into four distinct groups (I-IV) based on phylogenetic analysis, revealing seven sister pairs. We presented detailed information on gene sequences, structures, chromosome locations, and conserved motifs of ZmARFs. Through transient expression assays, we identified transcriptional activators or repressors among ZmARFs. Notably, our study demonstrated, for the first time, that ZmARF3 acts as a positive regulator of adventitious roots development in maize. This study not only provides basic insights into the maize ARF gene family but also sheds light on the specific functions of ZmARF3, paving the way for a more precise understanding of ZmARFs' roles in plant growth and development in maize.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142554776","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-21DOI: 10.1016/j.ncrops.2024.100052
Gaofeng Liu, Zixin Zhang
{"title":"Precise control of falling flowers and fruits is a key part of improving quality and efficiency","authors":"Gaofeng Liu, Zixin Zhang","doi":"10.1016/j.ncrops.2024.100052","DOIUrl":"10.1016/j.ncrops.2024.100052","url":null,"abstract":"<div><div>The strategic implementation of measures to minimize and optimize the timing of fruit drop plays a critical role in enhancing both quality and efficiency. Recent studies in <em>Arabidopsis</em> have substantiated the role of a complex kinase axis, centered on BR-SIGNALING KINASE 1 (BSK1), which regulates organ abscission in plants. These findings revealed that BSK proteins may act as scaffolds for assembling HAESA/HAESA-LIKE2 (HAE/HSL2) and YODA (YDA), facilitating YDA activation by plasma membrane receptors. Once activated, YDA initiates the mitogen-activated protein kinase (MAPK) phosphorylation cascade, which ultimately triggers abscission. Furthermore, research suggests that this process involves a diverse range of transcriptional regulatory mechanisms. The findings of this study offer valuable insights for investigating similar processes in other crops, significantly advancing the field of plant abscission research.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142532676","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-18DOI: 10.1016/j.ncrops.2024.100051
Dong Fu , Wenhua Wu , Ghazala Mustafa , Yong Yang , Pingfang Yang
{"title":"Molecular mechanisms of rice seed germination","authors":"Dong Fu , Wenhua Wu , Ghazala Mustafa , Yong Yang , Pingfang Yang","doi":"10.1016/j.ncrops.2024.100051","DOIUrl":"10.1016/j.ncrops.2024.100051","url":null,"abstract":"<div><div>Rice is a fundamental dietary worldwide. With the increasing adoption of direct seeding in rice cultivation, the need for rapid and synchronized germination, even under submerged conditions, has become critical. Additionally, addressing challenges such as pre-harvest sprouting and germination under various stress conditions is vital for improving rice production. Therefore, understanding the regulatory mechanisms that control rice seed germination is essential. Numerous studies have highlighted the pivotal roles of the phytohormones gibberellic acid (GA) and abscisic acid (ABA) in modulating rice seed germination, similar to their roles in <em>Arabidopsis</em>. Key factors, including genes that regulate germination under submergence, have been identified, further advancing our understanding of the molecular mechanisms underlying this process. This review synthesizes recent progress in the field, providing insights into the regulation of rice seed germination.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142440980","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-12DOI: 10.1016/j.ncrops.2024.100048
Aaqib Shaheen , Zheng Li , Yingying Yang , Jinjin Xie , Lele Zhu , Can Li , Fang Nie , Meng Wang , Yixian Wang , Awais Rasheed , Hao Li , Yun Zhou , Chun-Peng Song
{"title":"Genetic regulation of wheat plant architecture and future prospects for its improvement","authors":"Aaqib Shaheen , Zheng Li , Yingying Yang , Jinjin Xie , Lele Zhu , Can Li , Fang Nie , Meng Wang , Yixian Wang , Awais Rasheed , Hao Li , Yun Zhou , Chun-Peng Song","doi":"10.1016/j.ncrops.2024.100048","DOIUrl":"10.1016/j.ncrops.2024.100048","url":null,"abstract":"<div><div>More than a third of the world’s population's primary source of food is common wheat (<em>Triticum aestivum</em> L.). The total yield must be boosted from 3 tons hec<sup>‐1</sup> to 5 tons per hec<sup>‐1</sup> to meet the global food demands by 2050. A major breeding objective is to change the plant architecture to develop varieties suited for intensive agricultural practices and able to withstand climate extremes. Modifying plant architecture could significantly improve productivity; however, it is challenging due to negative associations with key agronomic traits influencing yield. The current research focus of this decade revolves around three critical agronomic variables: tiller number, plant height, and tiller angle. These variables have a significant role in altering plant architecture and ultimately impacting the potential yield. The ideal plant architecture requires moderate planting density, a narrow tiller angle, and reduced plant height, which can be attained through special tiller arrangement. Here, we review the developmental biology and underpinning genetics of the plant architecture traits, especially the genetic factors and environmental factors influencing wheat architecture. The use of crop wild relatives (CWRs), such as <em>Aegilops tauschii,</em> can enhance wheat cultivation by increasing breeding diversity and introgressing beneficial genes into elite wheat germplasm through the recently developed rapid high-throughput introgression (RHI) protocol. Identifying defective mutants and characterizing their corresponding genes will assist us in understanding the molecular mechanism and deploying beneficial alleles to manipulate plant architecture.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142328261","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-11DOI: 10.1016/j.ncrops.2024.100047
Jie Wu , Ying Song , Guang-Yu Wan , Liang-Qi Sun , Jing-Xian Wang , Zi-Sheng Zhang , Cheng-Bin Xiang
{"title":"Boosting crop yield and nitrogen use efficiency: the hidden power of nitrogen-iron balance","authors":"Jie Wu , Ying Song , Guang-Yu Wan , Liang-Qi Sun , Jing-Xian Wang , Zi-Sheng Zhang , Cheng-Bin Xiang","doi":"10.1016/j.ncrops.2024.100047","DOIUrl":"10.1016/j.ncrops.2024.100047","url":null,"abstract":"<div><div>The macronutrient nitrogen (N) and micronutrient iron (Fe) are essential mineral elements for plant growth and development and participate in multiple vital life activities through intricate interactions. N and Fe fertilizers were found to increase crop yield when applied together. However, the N-Fe balance has not been clearly defined, and the underlying molecular mechanisms have remained unknown until recently. This review summarizes recent advances in N-Fe balance and highlights the critical role of the hub transcription factor NIN-like proteins (NLPs) that integrate N and Fe signals to improve crop yield and nitrogen use efficiency (NUE) as well as the molecular mechanism underlying N-Fe balance-boosted yield and NUE, which provides insight into not only the enhancement of crop yield and NUE but also the innovation of green fertilizers, greatly benefiting global sustainable agriculture and ecosystems.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142323141","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-09-04DOI: 10.1016/j.ncrops.2024.100046
Hu Duo , Meng Yin , Rui Wang
{"title":"Molecular mechanisms of resistance and future perspectives in plant breeding strategies against Sclerotinia sclerotiorum","authors":"Hu Duo , Meng Yin , Rui Wang","doi":"10.1016/j.ncrops.2024.100046","DOIUrl":"10.1016/j.ncrops.2024.100046","url":null,"abstract":"<div><p><em>Sclerotinia sclerotiorum</em> is one of the most destructive and widespread phytopathogenic ascomycetes, causing significant yield and economic losses. Numerous studies have explored its virulence, plant recognition, and prolonged interactions with host defense systems. However, the key genes involved in these processes and their potential application in future breeding for <em>S. sclerotiorum</em> resistance remain insufficiently explored. Recent advances have significantly deepened our understanding of the molecular mechanisms underlying the interaction between <em>S. sclerotiorum</em> and plants, providing novel insights into the pathogen's mechanism and identifying key candidate genes for enhancing plant resistance. In this review, we summarize current knowledge on <em>S. sclerotiorum</em> pathogenesis, challenges in breeding for resistance, genetic improvement strategies for combating <em>Sclerotinia</em> stem rot, and recent genome sequencing data related to <em>S. sclerotiorum</em> resistance. Our aim is to propose a comprehensive strategy for plant molecular breeding against <em>S. sclerotiorum</em>, leveraging newly developed tools for genetic improvement.</p></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2949952624000360/pdfft?md5=4b84c19e92f605ddb1881dfba3b57993&pid=1-s2.0-S2949952624000360-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142239347","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
New CropsPub Date : 2024-08-30DOI: 10.1016/j.ncrops.2024.100045
Shahid Ullah Khan , Minchao Qian , Shengting Li , Yonghai Fan , Hui Wang , Wei Chang , Osama Alam , Sumbul Saeed , Kun Lu
{"title":"Unveiling CRISPR/Cas in rapeseed: Triumphs, trials, and tomorrow","authors":"Shahid Ullah Khan , Minchao Qian , Shengting Li , Yonghai Fan , Hui Wang , Wei Chang , Osama Alam , Sumbul Saeed , Kun Lu","doi":"10.1016/j.ncrops.2024.100045","DOIUrl":"10.1016/j.ncrops.2024.100045","url":null,"abstract":"<div><div>The clustered regularly interspaced short palindromic repeats (CRISPR) genome-editing technique has revolutionized our understanding of plant genomes. Over a decade ago, scientists began using CRISPR/Cas to rapidly breed plant species, model and non-model crops, and modify plant genomes to study specific genes and metabolic pathways. While the CRISPR/Cas system holds immense potential for genome editing, numerous obstacles may prevent it from fully realizing this potential. This paper reviews the history and current state of CRISPR/Cas9-mediated gene editing technology in rapeseed. Our discussion focuses on the advancements CRISPR/Cas9 has made in enhancing plant characteristics such as yield traits, quality, and disease resistance. To provide comprehensive insights for research focused on gene function studies or genetic improvement through genome editing technology, we review the latest progress in plant applications using emerging precise genome editing technologies and discuss the limitations, including technological hurdles. We also explore CRISPR/Cas applications in oilseed rape to achieve improved results within this framework. This review covers genes controlling abiotic stresses in rapeseed at various developmental stages and examines related literature on CRISPR/Cas technology applications. While much remains to be discovered, the existing background information will guide future investigations into genetic enhancement using CRISPR, beyond what is discussed here. We believe this literature will inspire deep interest and create new opportunities for scientists working on rapeseed improvement.</div></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142423383","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The role of epigenetics in tomato stress adaptation","authors":"Marianne Delarue , Moussa Benhamed , Sotirios Fragkostefanakis","doi":"10.1016/j.ncrops.2024.100044","DOIUrl":"10.1016/j.ncrops.2024.100044","url":null,"abstract":"<div><p>Climate change poses a major challenge to agriculture, affecting crop production through shifting weather patterns and an increase in extreme conditions such as heat waves, droughts, and floods, all of which are further compounded by biotic stress factors. Tomatoes, a vital dietary staple and significant agricultural product worldwide, are particularly susceptible to these changes. The need for developing climate-resilient tomato varieties is more urgent than ever to ensure food security. Epigenetic modifications, such as DNA methylation and histone modifications, play essential roles in gene expression regulation. These modifications can affect plant traits and responses to environmental stresses, enabling tomatoes to maintain productivity despite variable climates or disease pressures. Tomato, as a model plant, offers valuable insights into the epigenetic mechanisms underlying fruit development and responses to stress. This review provides an overview of key discoveries regarding to tomato response and resilience mechanisms related to epigenetics, highlighting their potential in breeding strategies to enhance tomato resilience against both abiotic and biotic challenges, thereby promoting sustainable agricultural practices in the context of global climate change.</p></div>","PeriodicalId":100953,"journal":{"name":"New Crops","volume":null,"pages":null},"PeriodicalIF":0.0,"publicationDate":"2024-08-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2949952624000347/pdfft?md5=d46a916db43b1410a9e4d46b951b2154&pid=1-s2.0-S2949952624000347-main.pdf","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142148249","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}