{"title":"An artificial neural network for classifying cross peaks in two-dimensional NMR spectra","authors":"Simon A Corne, A.Peter Johnson, Julie Fisher","doi":"10.1016/0022-2364(92)90260-E","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90260-E","url":null,"abstract":"<div><p>A simulated neural network is described that has been trained to classify cross peaks in the 2D NMR spectra of biological macromolecules. The trained network has then been used to classify previously unseen data. The network is able to distinguish between authentic cross peaks and spectral artifacts, such as those arising from presaturation of water, noise, and <em>t</em><sub>1</sub> noise. Moreover, the network is able to recognize genuine peaks whose shapes have been modified, for example, by overlap with other real or spurious peaks. Herein, the training and performance of the network are demonstrated for a NOESY spectrum.</p></div>","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 256-266"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90260-E","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91631627","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Oliver Zerbe, John H Welsh, John A Robinson, Wolfgang Von Philipsborn
{"title":"A 13C- and 15N-edited triple-resonance ROESY experiment","authors":"Oliver Zerbe, John H Welsh, John A Robinson, Wolfgang Von Philipsborn","doi":"10.1016/0022-2364(92)90265-9","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90265-9","url":null,"abstract":"<div><p>A new triple-resonance pulse sequence that allows <sup>13</sup>C and <sup>15</sup>N editing of ROESY spectra is demonstrated. It incorporates filters that select for heteronuclear multiple-quantum coherence. The phase cycling provides efficient suppression of all peaks except those that originate from ROE magnetization transfer from protons coupled to <sup>13</sup> 3C to protons coupled to <sup>15</sup>N. The loss in signal intensity caused by the filters is discussed. An application of the pulse sequence to a nonapeptide containing two <sup>13</sup>C and two <sup>15</sup>N labels is shown and compared to the conventional ROESY spectrum. The observed ROE indicate a significant population of a turn conformation for the peptide backbone.</p></div>","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 329-335"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90265-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90001159","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"The elimination of magnetic susceptibility distortions in the imaging of liquids in solids: The stray field imaging technique","authors":"P Kinchesh , E.W Randall , K Zick","doi":"10.1016/0022-2364(92)90275-C","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90275-C","url":null,"abstract":"","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 411-415"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90275-C","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91631686","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Optimized acquisition and processing of homonuclear 3D NMR spectra. Applications to transferred-NOE experiments","authors":"Feng Ni","doi":"10.1016/0022-2364(92)90272-9","DOIUrl":"10.1016/0022-2364(92)90272-9","url":null,"abstract":"","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 391-400"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90272-9","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"84136327","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Systematic sources of signal irreproducibility and t1 noise in high-field NMR spectrometers","authors":"Gareth A Morris","doi":"10.1016/0022-2364(92)90264-8","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90264-8","url":null,"abstract":"<div><p>Many of the most powerful modern NMR techniques rely heavily on spectrometer stability and reproducibility. Any deficiencies in these two parameters result in such artifacts as <em>t</em><sub>1</sub> noise in 2D NMR and spurious signals in difference spectra. One of the most important sources of error in NMR signals is the irreproducibility of the effective phases of radio-frequency pulses. In this paper a successful search for systematic sources of such errors in a modern spectrometer is described, and suggestions are given for their treatment. In the spectrometer under study, a threefold improvement in pulse reproducibility was achieved.</p></div>","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 316-328"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90264-8","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91631683","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jesus Ruiz-Cabello , Geerten W Vuister , Chrit T.W Moonen , Peter van Gelderen , Jack S Cohen , Peter C.M van Zijl
{"title":"Gradient-enhanced heteronuclear correlation spectroscopy. Theory and experimental aspects","authors":"Jesus Ruiz-Cabello , Geerten W Vuister , Chrit T.W Moonen , Peter van Gelderen , Jack S Cohen , Peter C.M van Zijl","doi":"10.1016/0022-2364(92)90262-6","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90262-6","url":null,"abstract":"<div><p>A detailed theoretical and experimental treatment is given for gradient-enhanced heteronuclear correlation spectroscopy. Both multiple-quantum and single-quantum sequences are described. In addition to a comparison with conventional experiments using phase cycling, the effects of different gradient combinations are examined with respect to artifacts occurring in the heteronuclear dimension. The influence of gradient performance and diffusion on sensitivity is discussed. Approaches to attain phase-sensitive spectra are also analyzed.</p></div>","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 282-302"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90262-6","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90001357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jeffery L White, Larry W Beck, David B Ferguson, James F Haw
{"title":"Background suppression in MAS NMR","authors":"Jeffery L White, Larry W Beck, David B Ferguson, James F Haw","doi":"10.1016/0022-2364(92)90266-A","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90266-A","url":null,"abstract":"<div><p>Pulse sequences for suppressing background signals from spinning modules used in magic-angle spinning NMR are described. These pulse sequences are based on spatially selective composite 90° pulses originally reported by Bax, which provide for no net excitation of spins outside the homogeneous region of the coil. We have achieved essentially complete suppression of background signals originating from our Vespel spinning module (which uses a free-standing coil) in both <sup>1</sup>H and <sup>13</sup>C spectra without notable loss in signal intensity. Successful modification of both Bloch decay and cross-polarization pulse sequences to include spatially selective pulses was essential to acquire background-free spectra for weak samples. Background suppression was also found to be particularly valuable for both <em>T</em><sub>1</sub> and <em>T</em><sub>1<em>ϱ</em></sub>, relaxation measurements.</p></div>","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 336-341"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90266-A","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91631689","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"A two-dimensional experiment for measurement of couplings between rare spin-12 nuclei with proton sensitivity","authors":"riks Kupče , Bernd Wrackmeyer, Pierre Granger","doi":"10.1016/0022-2364(92)90273-A","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90273-A","url":null,"abstract":"","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 401-405"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90273-A","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"91631684","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Edward T Olejniczak, Robert X Xu, Andrew M Petros, Stephen W Fesik
{"title":"Optimized constant-time 4D HNCAHA and HN(CO)CAHA experiments. Applications to the backbone assignments of the FKBP/ascomycin complex","authors":"Edward T Olejniczak, Robert X Xu, Andrew M Petros, Stephen W Fesik","doi":"10.1016/0022-2364(92)90280-K","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90280-K","url":null,"abstract":"","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 444-450"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90280-K","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90001359","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Andy C Wang , Seong-Gi Kim , Peter F Flynn , Einar Sletten , Brian R Reid
{"title":"Considerations in the application of orientation-dependent analysis of NOE intensities to DNA oligonucleotides","authors":"Andy C Wang , Seong-Gi Kim , Peter F Flynn , Einar Sletten , Brian R Reid","doi":"10.1016/0022-2364(92)90268-C","DOIUrl":"https://doi.org/10.1016/0022-2364(92)90268-C","url":null,"abstract":"","PeriodicalId":100800,"journal":{"name":"Journal of Magnetic Resonance (1969)","volume":"100 2","pages":"Pages 358-366"},"PeriodicalIF":0.0,"publicationDate":"1992-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1016/0022-2364(92)90268-C","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"90001361","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}