BMC Developmental Biology最新文献

筛选
英文 中文
Natriuretic peptides and Forkhead O transcription factors act in a cooperative manner to promote cardiomyocyte cell cycle re-entry in the postnatal mouse heart. 利钠肽和叉头O转录因子协同作用,促进出生后小鼠心脏的心肌细胞周期再进入。
BMC Developmental Biology Pub Date : 2021-02-03 DOI: 10.1186/s12861-020-00236-y
Mir Ali, Daniela Liccardo, Tongtong Cao, Ying Tian
{"title":"Natriuretic peptides and Forkhead O transcription factors act in a cooperative manner to promote cardiomyocyte cell cycle re-entry in the postnatal mouse heart.","authors":"Mir Ali,&nbsp;Daniela Liccardo,&nbsp;Tongtong Cao,&nbsp;Ying Tian","doi":"10.1186/s12861-020-00236-y","DOIUrl":"https://doi.org/10.1186/s12861-020-00236-y","url":null,"abstract":"<p><strong>Background: </strong>Cardiomyocytes proliferate rapidly during fetal life but lose their ability of proliferation soon after birth. However, before terminal withdrawal from the cell cycle, cardiomyocytes undergo another round of cell cycle during early postnatal life in mice. While a transient wave of increased DNA synthesis in cardiomyocyte has been observed in postnatal mouse hearts, the molecular mechanisms describing cardiomyocyte cell cycle re-entry remain poorly understood. Atrial and B-type natriuretic peptides (ANP and BNP) are abundantly expressed in embryonic heart ventricles. After birth, the expression of both genes is strongly reduced in the ventricular myocardium. Forkhead O (FOXO) transcription factors are expressed in both embryonic and postnatal heart ventricles. Their transcriptional activity negatively affects cardiomyocyte proliferation. Upon phosphorylation, FOXO is translocated to the cytoplasm and is transcriptionally inactive. Despite these important findings, it remains largely unknown whether natriuretic peptides and FOXO cooperatively play a role in regulating cardiomyocyte cell cycle activity during early postnatal life.</p><p><strong>Results: </strong>We observed that the expression of ANP and BNP and the level of phosphorylated FOXO were transiently increased in the postnatal mouse heart ventricles, which coincided with the burst of cardiomyocyte cell cycle re-entry during early postnatal life in mice. Cell culture studies showed that ANP/BNP signaling and FOXO cooperatively promoted cell cycle activity in neonatal mouse cardiomyocytes. The enhanced cell cycle activity observed in combined treatment of ANP/BNP and dominant-negative FOXO (DN-FOXO), which can bind FOXO recognition sites on DNA but cannot activate transcription, was primarily mediated through natriuretic peptide receptor 3 (Npr3). In mice, simultaneous application of ANP and DN-FOXO in postnatal hearts reactivated cell cycle in cardiomyocytes, resulting in reduced scar formation after experimental myocardial infarction.</p><p><strong>Conclusions: </strong>Our data demonstrate the cooperative effects of natriuretic peptide and DN-FOXO on promoting cardiomyocyte cell cycle activity and mouse cardiac repair and regeneration after injury.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":" ","pages":"6"},"PeriodicalIF":0.0,"publicationDate":"2021-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12861-020-00236-y","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25324574","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Generation and identification of a conditional knockout allele for the PSMD11 gene in mice. 小鼠PSMD11基因条件敲除等位基因的产生和鉴定。
BMC Developmental Biology Pub Date : 2021-02-01 DOI: 10.1186/s12861-020-00233-1
Linlin Zhao, Jinming Zhao, Yingying Zhang, Lele Wang, Longyan Zuo, Airu Niu, Wei Zhang, Xia Xue, Suhong Zhao, Chao Sun, Kailin Li, Jue Wang, Zhimin Bian, Xiaogang Zhao, Dieter Saur, Barbara Seidler, Chuanxin Wang, Tonggang Qi
{"title":"Generation and identification of a conditional knockout allele for the PSMD11 gene in mice.","authors":"Linlin Zhao,&nbsp;Jinming Zhao,&nbsp;Yingying Zhang,&nbsp;Lele Wang,&nbsp;Longyan Zuo,&nbsp;Airu Niu,&nbsp;Wei Zhang,&nbsp;Xia Xue,&nbsp;Suhong Zhao,&nbsp;Chao Sun,&nbsp;Kailin Li,&nbsp;Jue Wang,&nbsp;Zhimin Bian,&nbsp;Xiaogang Zhao,&nbsp;Dieter Saur,&nbsp;Barbara Seidler,&nbsp;Chuanxin Wang,&nbsp;Tonggang Qi","doi":"10.1186/s12861-020-00233-1","DOIUrl":"https://doi.org/10.1186/s12861-020-00233-1","url":null,"abstract":"<p><strong>Background: </strong>Our previous study have shown that the PSMD11 protein was an important survival factor for cancer cells except for its key role in regulation of assembly and activity of the 26S proteasome. To further investigate the role of PSMD11 in carcinogenesis, we constructed a conditional exon 5 floxed allele of PSMD11 (PSMD11<sup>flx</sup>) in mice.</p><p><strong>Results: </strong>It was found that homozygous PSMD11 <sup>flx/flx</sup> mice showed normal and exhibited a normal life span and fertility, and showed roughly equivalent expression of PSMD11 in various tissues, suggesting that the floxed allele maintained the wild-type function. Cre recombinase could induce efficient knockout of the floxed PSMD11 allele both in vitro and in vivo. Mice with constitutive single allele deletion of PSMD11 derived from intercrossing between PSMD11<sup>flx/flx</sup> and CMV-Cre mice were all viable and fertile, and showed apparent growth retardation, suggesting that PSMD11 played a significant role in the development of mice pre- or postnatally. No whole-body PSMD11 deficient embryos (PSMD11<sup>-/-</sup>) were identified in E7.5-8.5 embryos in uteros, indicating that double allele knockout of PSMD11 leads to early embryonic lethality. To avoid embryonic lethality produced by whole-body PSMD11 deletion, we further developed conditional PSMD11 global knockout mice with genotype Flp;FSF-R26<sup>CAG - CreERT2/+</sup>; PSMD11 <sup>flx/flx</sup>, and demonstrated that PSMD11 could be depleted in a temporal and tissue-specific manner. Meanwhile, it was found that depletion of PSMD11 could induce massive apoptosis in MEFs.</p><p><strong>Conclusions: </strong>In summary, our data demonstrated that we have successfully generated a conditional knockout allele of PSMD11 in mice, and found that PSMD11 played a key role in early and postnatal development in mice, the PSMD11 <sup>flx/flx</sup> mice will be an invaluable tool to explore the functions of PSMD11 in development and diseases.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":" ","pages":"4"},"PeriodicalIF":0.0,"publicationDate":"2021-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12861-020-00233-1","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25313974","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Etomoxir regulates the differentiation of male germ cells by specifically reducing H3K27ac level. 依托莫西通过特异性降低H3K27ac水平调节男性生殖细胞的分化。
BMC Developmental Biology Pub Date : 2021-02-01 DOI: 10.1186/s12861-020-00237-x
Yushan Xu, Jue Xie
{"title":"Etomoxir regulates the differentiation of male germ cells by specifically reducing H3K27ac level.","authors":"Yushan Xu,&nbsp;Jue Xie","doi":"10.1186/s12861-020-00237-x","DOIUrl":"https://doi.org/10.1186/s12861-020-00237-x","url":null,"abstract":"<p><strong>Background: </strong>Fatty acid oxidation plays an important role in a variety of developing and mature organ systems. However, the role of this metabolic pathway in different stages of testis development remains unknown. Here, we elucidate the mechanisms by which fatty acid oxidation regulates the maintenance and differentiation of gonocytes and spermatogonial stem cells.</p><p><strong>Results: </strong>During E13.5-E15.5, male germ cells gradually enter the mitotic arrest phase, while the expression of CPT1A, a rate-limiting enzyme for fatty acid oxidation, gradually increases. Therefore, we treated pregnant mice (E13.5 to E15.5) with etomoxir, which is an inhibitor of CPT1A. Etomoxir-treated mice showed no difference in embryonic morphology; however, etomoxir-treated male gonocytes exited mitotic arrest, and cells of the gonad underwent apoptosis. In addition, etomoxir-treated mice at P7 displayed impaired homing of spermatogonia and increased cell apoptosis. We further demonstrated that inhibition of fatty acid oxidation in gonads was associated with gonocyte differentiation events and the histone modification H3K27ac.</p><p><strong>Conclusions: </strong>Inhibiting fatty acid oxidation can specifically reduce the level of H3K27ac in the reproductive crest, which may be the cause of the down-regulation of male differentiation-specific gene expression, which ultimately leads to the male primordial germ cells exited from mitotic arrest. Our work uncovers metabolic reprogramming during male gonadal development, revealing that it plays an important role in the maintenance of gonocytes in a differentiated and quiescent state during foetal testis development.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":" ","pages":"5"},"PeriodicalIF":0.0,"publicationDate":"2021-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12861-020-00237-x","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"25313973","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 8
Interleukin-6 promotes primitive endoderm development in bovine blastocysts. 白细胞介素-6促进牛囊胚原始内胚层发育。
BMC Developmental Biology Pub Date : 2021-01-12 DOI: 10.1186/s12861-020-00235-z
Lydia K Wooldridge, Alan D Ealy
{"title":"Interleukin-6 promotes primitive endoderm development in bovine blastocysts.","authors":"Lydia K Wooldridge,&nbsp;Alan D Ealy","doi":"10.1186/s12861-020-00235-z","DOIUrl":"https://doi.org/10.1186/s12861-020-00235-z","url":null,"abstract":"<p><strong>Background: </strong>Interleukin-6 (IL6) was recently identified as an embryotrophic factor in bovine embryos, where it acts primarily to mediate inner cell mass (ICM) size. This work explored whether IL6 affects epiblast (EPI) and primitive endoderm (PE) development, the two embryonic lineages generated from the ICM after its formation. Nuclear markers for EPI (NANOG) and PE (GATA6) were used to differentiate the two cell types.</p><p><strong>Results: </strong>Increases (P < 0.05) in total ICM cell numbers and PE cell numbers were detected in bovine blastocysts at day 8 and 9 post-fertilization after exposure to 100 ng/ml recombinant bovine IL6. Also, IL6 increased (P < 0.05) the number of undifferentiated ICM cells (cells containing both PE and EPI markers). The effects of IL6 on EPI cell numbers were inconsistent. Studies were also completed to explore the importance of Janus kinase 2 (JAK2)-dependent signaling in bovine PE cells. Definitive activation of STAT3, a downstream target for JAK2, was observed in PE cells. Also, pharmacological inhibition of JAK2 decreased (P < 0.05) PE cell numbers.</p><p><strong>Conclusions: </strong>To conclude, IL6 manipulates ICM development after EPI/PE cell fates are established. The PE cells are the target for IL6, where a JAK-dependent signal is used to regulate PE numbers.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":" ","pages":"3"},"PeriodicalIF":0.0,"publicationDate":"2021-01-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12861-020-00235-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38808005","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Dynamic conversion of cell sorting patterns in aggregates of embryonic stem cells with differential adhesive affinity. 具有不同粘附亲和力的胚胎干细胞聚集体中细胞分拣模式的动态转换。
BMC Developmental Biology Pub Date : 2021-01-06 DOI: 10.1186/s12861-020-00234-0
Jeffrey D Tse, Robert Moore, Yue Meng, Wensi Tao, Elizabeth R Smith, Xiang-Xi Xu
{"title":"Dynamic conversion of cell sorting patterns in aggregates of embryonic stem cells with differential adhesive affinity.","authors":"Jeffrey D Tse, Robert Moore, Yue Meng, Wensi Tao, Elizabeth R Smith, Xiang-Xi Xu","doi":"10.1186/s12861-020-00234-0","DOIUrl":"10.1186/s12861-020-00234-0","url":null,"abstract":"<p><strong>Background: </strong>Mammalian early development comprises the proliferation, differentiation, and self-assembly of the embryonic cells. The classic experiment undertaken by Townes and Holtfreter demonstrated the ability of dissociated embryonic cells to sort and self-organize spontaneously into the original tissue patterns. Here, we further explored the principles and mechanisms underlying the phenomenon of spontaneous tissue organization by studying aggregation and sorting of mouse embryonic stem (ES) cells with differential adhesive affinity in culture.</p><p><strong>Results: </strong>As observed previously, in aggregates of wild-type and E-cadherin-deficient ES cells, the cell assemblies exhibited an initial sorting pattern showing wild-type cells engulfed by less adhesive E-cadherin-deficient ES cells, which fits the pattern predicted by the differential adhesive hypothesis proposed by Malcom Steinberg. However, in further study of more mature cell aggregates, the initial sorting pattern reversed, with the highly adhesive wild-type ES cells forming an outer shell enveloping the less adhesive E-cadherin-deficient cells, contradicting Steinberg's sorting principle. The outer wild-type cells of the more mature aggregates did not differentiate into endoderm, which is known to be able to sort to the exterior from previous studies. In contrast to the naive aggregates, the mature aggregates presented polarized, highly adhesive cells at the outer layer. The surface polarity was observed as an actin cap contiguously spanning across the apical surface of multiple adjacent cells, though independent of the formation of tight junctions.</p><p><strong>Conclusions: </strong>Our experimental findings suggest that the force of differential adhesive affinity can be overcome by even subtle polarity generated from strong bilateral ligation of highly adhesive cells in determining cell sorting patterns.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":" ","pages":"2"},"PeriodicalIF":0.0,"publicationDate":"2021-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7788919/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38787849","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effect of inorganic phosphate on migration and osteogenic differentiation of bone marrow mesenchymal stem cells. 无机磷酸盐对骨髓间充质干细胞迁移和成骨分化的影响。
BMC Developmental Biology Pub Date : 2021-01-06 DOI: 10.1186/s12861-020-00229-x
Hengzhang Lin, Yong Zhou, Qun Lei, Dong Lin, Jiang Chen, Chuhuo Wu
{"title":"Effect of inorganic phosphate on migration and osteogenic differentiation of bone marrow mesenchymal stem cells.","authors":"Hengzhang Lin,&nbsp;Yong Zhou,&nbsp;Qun Lei,&nbsp;Dong Lin,&nbsp;Jiang Chen,&nbsp;Chuhuo Wu","doi":"10.1186/s12861-020-00229-x","DOIUrl":"https://doi.org/10.1186/s12861-020-00229-x","url":null,"abstract":"<p><strong>Background: </strong>Phosphate is the major ingredient of bone tissue, and is also an important component of commercial bone substitute materials, bone scaffolds, and implant surface coatings. With the dissolution of the bone substitute materials and the degradation by cells, local ion concentrations will change and affect bone tissue reconstruction. Bone marrow -derived mesenchymal stem cells (BM-MSCs) are main autologous cells to repair injured bone. When bone injure occurs, BM-MSCs migrate to the damaged area, differentiate into osteoblasts, and secrete bioactive factors to promote bone tissue repaired. This study aimed to investigate the effect of inorganic phosphate (Pi) at a series of concentration on migration and osteogenic differentiation of human bone marrow -derived mesenchymal stem cells(hBM-MSCs).</p><p><strong>Methods: </strong>The culture of hBM-MSCs in mediums with different concentration of Pi from 2 mM to 10 mM were performed. HBM-MSCs migration were examined with transwell assays. HBM-MSCs proliferation were evaluated by cell counting kit-8 colorimetric method. Osteogenic genes expression were analyzed by real-time reverse transcriptase polymerase chain reaction. Mineralized nodules formation were demonstrated by Alizarin red staining.</p><p><strong>Result: </strong>4-10 mM Pi could effectively promote the migration of hBM-MSCs at 12 h and 18 h. There was no significant difference in the migration number of hBM-MSCs in Pi culture mediums at a concentration of 6, 8, and10mM. 2-10 mM Pi could promote the proliferation of hBM-MSCs to varying degrees in the observation period, while 4-10 mM Pi could promote the osteogenic differentiation and mineralization of hBM-MSCs.</p><p><strong>Conclusion: </strong>The findings in our study showed 4-10 mM Pi could promote the migration, osteogenic differentiation, and mineralization of hBM-MSCs.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":" ","pages":"1"},"PeriodicalIF":0.0,"publicationDate":"2021-01-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7788862/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38787852","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 10
Expression patterns of ciliopathy genes ARL3 and CEP120 reveal roles in multisystem development. 纤毛症基因 ARL3 和 CEP120 的表达模式揭示了它们在多系统发育中的作用。
BMC Developmental Biology Pub Date : 2020-12-09 DOI: 10.1186/s12861-020-00231-3
L Powell, M Barroso-Gil, G J Clowry, L A Devlin, E Molinari, S A Ramsbottom, C G Miles, J A Sayer
{"title":"Expression patterns of ciliopathy genes ARL3 and CEP120 reveal roles in multisystem development.","authors":"L Powell, M Barroso-Gil, G J Clowry, L A Devlin, E Molinari, S A Ramsbottom, C G Miles, J A Sayer","doi":"10.1186/s12861-020-00231-3","DOIUrl":"10.1186/s12861-020-00231-3","url":null,"abstract":"<p><strong>Background: </strong>Joubert syndrome and related disorders (JSRD) and Jeune syndrome are multisystem ciliopathy disorders with overlapping phenotypes. There are a growing number of genetic causes for these rare syndromes, including the recently described genes ARL3 and CEP120.</p><p><strong>Methods: </strong>We sought to explore the developmental expression patterns of ARL3 and CEP120 in humans to gain additional understanding of these genetic conditions. We used an RNA in situ detection technique called RNAscope to characterise ARL3 and CEP120 expression patterns in human embryos and foetuses in collaboration with the MRC-Wellcome Trust Human Developmental Biology Resource.</p><p><strong>Results: </strong>Both ARL3 and CEP120 are expressed in early human brain development, including the cerebellum and in the developing retina and kidney, consistent with the clinical phenotypes seen with pathogenic variants in these genes.</p><p><strong>Conclusions: </strong>This study provides insights into the potential pathogenesis of JSRD by uncovering the spatial expression of two JSRD-causative genes during normal human development.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":"20 1","pages":"26"},"PeriodicalIF":0.0,"publicationDate":"2020-12-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7727171/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38355582","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Transcriptomic profiles of non-embryogenic and embryogenic callus cells in a highly regenerative upland cotton line (Gossypium hirsutum L.). 高再生陆地棉非胚性和胚性愈伤组织细胞的转录组学分析。
BMC Developmental Biology Pub Date : 2020-12-02 DOI: 10.1186/s12861-020-00230-4
Li Wen, Wei Li, Stephen Parris, Matthew West, John Lawson, Michael Smathers, Zhigang Li, Don Jones, Shuangxia Jin, Christopher A Saski
{"title":"Transcriptomic profiles of non-embryogenic and embryogenic callus cells in a highly regenerative upland cotton line (Gossypium hirsutum L.).","authors":"Li Wen,&nbsp;Wei Li,&nbsp;Stephen Parris,&nbsp;Matthew West,&nbsp;John Lawson,&nbsp;Michael Smathers,&nbsp;Zhigang Li,&nbsp;Don Jones,&nbsp;Shuangxia Jin,&nbsp;Christopher A Saski","doi":"10.1186/s12861-020-00230-4","DOIUrl":"https://doi.org/10.1186/s12861-020-00230-4","url":null,"abstract":"<p><strong>Background: </strong>Genotype independent transformation and whole plant regeneration through somatic embryogenesis relies heavily on the intrinsic ability of a genotype to regenerate. The critical genetic architecture of non-embryogenic callus (NEC) cells and embryogenic callus (EC) cells in a highly regenerable cotton genotype is unknown.</p><p><strong>Results: </strong>In this study, gene expression profiles of a highly regenerable Gossypium hirsutum L. cultivar, Jin668, were analyzed at two critical developmental stages during somatic embryogenesis, non-embryogenic callus (NEC) cells and embryogenic callus (EC) cells. The rate of EC formation in Jin668 is 96%. Differential gene expression analysis revealed a total of 5333 differentially expressed genes (DEG) with 2534 genes upregulated and 2799 genes downregulated in EC. A total of 144 genes were unique to NEC cells and 174 genes were unique to EC. Clustering and enrichment analysis identified genes upregulated in EC that function as transcription factors/DNA binding, phytohormone response, oxidative reduction, and regulators of transcription; while genes categorized in methylation pathways were downregulated. Four key transcription factors were identified based on their sharp upregulation in EC tissue; LEAFY COTYLEDON 1 (LEC1), BABY BOOM (BBM), FUSCA (FUS3) and AGAMOUS-LIKE15 with distinguishable subgenome expression bias.</p><p><strong>Conclusions: </strong>This comparative analysis of NEC and EC transcriptomes gives new insights into the genes involved in somatic embryogenesis in cotton.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":"20 1","pages":"25"},"PeriodicalIF":0.0,"publicationDate":"2020-12-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12861-020-00230-4","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38667143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 17
Label-free quantitative proteomic analysis of insect larval and metamorphic molts. 昆虫幼虫和变质蜕皮的无标记定量蛋白质组学分析。
BMC Developmental Biology Pub Date : 2020-11-24 DOI: 10.1186/s12861-020-00227-z
Weiye Si, Qingjie Wang, Yu Li, Dujuan Dong
{"title":"Label-free quantitative proteomic analysis of insect larval and metamorphic molts.","authors":"Weiye Si,&nbsp;Qingjie Wang,&nbsp;Yu Li,&nbsp;Dujuan Dong","doi":"10.1186/s12861-020-00227-z","DOIUrl":"https://doi.org/10.1186/s12861-020-00227-z","url":null,"abstract":"<p><strong>Background: </strong>Molting is an essential biological process occurring characteristic times throughout the life cycle of holometabolous insects. However, it is not clear how insects determine the direction of molting to remain status quo or to initiate metamorphosis. To explore the functional factors that determine the direction of molts, liquid chromatography-mass spectrometry was used to identify the molecules involved in larval and metamorphic molting, and the differentially expressed proteins (DEPs) were compared in the two processes.</p><p><strong>Results: </strong>There were 321 and 1140 DEPs identified in larval and metamorphic molting process, respectively. Bioinformatics analyses show that the amino sugar pathway was up-regulated in both processes. The up-regulated protease contributed to the metamorphosis. In addition, several proteins with different expression patterns in larval-larval and larval-pupal transitions, including Endochitinase, GRIM-19 (Genes associated with retinoid-IFN-induced mortality-19), IDE (Insulin-degrading enzyme), Sorcin (Soluble resistance related calcium binding protein), OBP (Odorant-binding protein-2 precursor), TRAP1(Tumor necrosis factor receptor associated protein-1), etc., were further identified by parallel reaction monitoring, which may play diverse functions in larval-larval and larval-pupal transitions.</p><p><strong>Conclusions: </strong>These results provide a proteomic insight into molecules involved in larval and metamorphic molts, and will likely improve the current understanding of determination of direction of molts.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":"20 1","pages":"24"},"PeriodicalIF":0.0,"publicationDate":"2020-11-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1186/s12861-020-00227-z","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38641980","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Bivalves are NO different: nitric oxide as negative regulator of metamorphosis in the Pacific oyster, Crassostrea gigas. 双壳贝类与众不同:一氧化氮是太平洋牡蛎(Crassostrea gigas)变态过程中的负调节因子。
BMC Developmental Biology Pub Date : 2020-11-23 DOI: 10.1186/s12861-020-00232-2
Susanne Vogeler, Stefano Carboni, Xiaoxu Li, Nancy Nevejan, Sean J Monaghan, Jacqueline H Ireland, Alyssa Joyce
{"title":"Bivalves are NO different: nitric oxide as negative regulator of metamorphosis in the Pacific oyster, Crassostrea gigas.","authors":"Susanne Vogeler, Stefano Carboni, Xiaoxu Li, Nancy Nevejan, Sean J Monaghan, Jacqueline H Ireland, Alyssa Joyce","doi":"10.1186/s12861-020-00232-2","DOIUrl":"10.1186/s12861-020-00232-2","url":null,"abstract":"<p><strong>Background: </strong>Nitric oxide (NO) is presumed to be a regulator of metamorphosis in many invertebrate species, and although NO pathways have been comparatively well-investigated in gastropods, annelids and crustaceans, there has been very limited research on the effects of NO on metamorphosis in bivalve shellfish.</p><p><strong>Results: </strong>In this paper, we investigate the effects of NO pathway inhibitors and NO donors on metamorphosis induction in larvae of the Pacific oyster, Crassostrea gigas. The nitric oxides synthase (NOS) inhibitors s-methylisothiourea hemisulfate salt (SMIS), aminoguanidine hemisulfate salt (AGH) and 7-nitroindazole (7-NI) induced metamorphosis at 75, 76 and 83% respectively, and operating in a concentration-dependent manner. Additional induction of up to 54% resulted from exposures to 1H-[1,2,4]Oxadiazole[4,3-a]quinoxalin-1-one (ODQ), an inhibitor of soluble guanylyl cyclase, with which NO interacts to catalyse the synthesis of cyclic guanosine monophosphate (cGMP). Conversely, high concentrations of the NO donor sodium nitroprusside dihydrate in combination with metamorphosis inducers epinephrine, MK-801 or SMIS, significantly decreased metamorphosis, although a potential harmful effect of excessive NO unrelated to metamorphosis pathway cannot be excluded. Expression of CgNOS also decreased in larvae after metamorphosis regardless of the inducers used, but intensified again post-metamorphosis in spat. Fluorescent detection of NO in competent larvae with DAF-FM diacetate and localisation of the oyster nitric oxide synthase CgNOS expression by in-situ hybridisation showed that NO occurs primarily in two key larval structures, the velum and foot. cGMP was also detected in the foot using immunofluorescent assays, and is potentially involved in the foot's smooth muscle relaxation.</p><p><strong>Conclusion: </strong>Together, these results suggest that the NO pathway acts as a negative regulator of metamorphosis in Pacific oyster larvae, and that NO reduction induces metamorphosis by inhibiting swimming or crawling behaviour, in conjunction with a cascade of additional neuroendocrine downstream responses.</p>","PeriodicalId":9130,"journal":{"name":"BMC Developmental Biology","volume":"20 1","pages":"23"},"PeriodicalIF":0.0,"publicationDate":"2020-11-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7686737/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"38737634","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
相关产品
×
本文献相关产品
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信