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Probing microRNA network with small molecules 用小分子探测microRNA网络
RNA & disease (Houston, Tex.) Pub Date : 2014-12-01 DOI: 10.14800/RD.450
Jinbo Li, Haixiao Huang, Tingting Xia, Yan Zhang, Chenyu Zhang
{"title":"Probing microRNA network with small molecules","authors":"Jinbo Li, Haixiao Huang, Tingting Xia, Yan Zhang, Chenyu Zhang","doi":"10.14800/RD.450","DOIUrl":"https://doi.org/10.14800/RD.450","url":null,"abstract":"MicroRNAs (miRNAs) are emerging as novel regulators in gene expression. Due to the large population of miRNAs and their important function inside cells, miRNA network is essential for normal physiology but still remains unclear. Recent results also showed miRNAs are closely related with the occurrence and development of various human diseases. Thus, revealing miRNA network is urgently needed for not only biological studies but also medical treatment. Small molecules that can regulate miRNA pathway hold great potential in probing miRNA network. With developed cellular reporter system, we have found two small molecules from photoreaction products that can universally activate miRNA and specifically inhibit myomiRs. With the latter small molecule, a novel miRNA regulatory pathway, miR-221/222-myoD-myomiRs, was successfully unveiled.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66657465","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
MicroRNA-135b as therapeutic target in cancers MicroRNA-135b作为癌症的治疗靶点
RNA & disease (Houston, Tex.) Pub Date : 2014-11-21 DOI: 10.14800/RD.410
Ching-Wen Lin, T. Hong, Pan‐Chyr Yang
{"title":"MicroRNA-135b as therapeutic target in cancers","authors":"Ching-Wen Lin, T. Hong, Pan‐Chyr Yang","doi":"10.14800/RD.410","DOIUrl":"https://doi.org/10.14800/RD.410","url":null,"abstract":"MicroRNAs (miRNAs) are small non-coding RNAs that can negatively regulate gene expression at the post-transcriptional level through the RNA-induced silencing complex (RISC)-mediated inhibition. Because of the imperfect and short seed-binding region of the target sequences, miRNAs hold capacity for multi-targeting and are able to regulate a wide range of cellular functions and signaling. Numerous researches have revealed that dysregulated miRNAs are closely associated with cancer progression. Moreover, genome-wide screening shows that the expression profile of miRNAs can serve as biomarkers for early diagnosis, stratifying patient outcome, and predicting treatment efficiency for cancer patients. Hence, seeking and dissecting the detailed mechanisms of cancer-associated miRNA may provide a new avenue for cancer targeting therapy. This review discussed the current proposed mechanisms of miR-135b involvement in cancer progression and tissue differentiation, both of which are considered as functional equivalents. The regulatory network of miR-135b are also addressed to further clarify the potential oncogenic role of miR-135b.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66657125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
Emerging role for PLCβ1 MiRNA and disease plc - β1 MiRNA在疾病中的新作用
RNA & disease (Houston, Tex.) Pub Date : 2014-10-27 DOI: 10.14800/RD.363
I. Faenza, L. Cocco
{"title":"Emerging role for PLCβ1 MiRNA and disease","authors":"I. Faenza, L. Cocco","doi":"10.14800/RD.363","DOIUrl":"https://doi.org/10.14800/RD.363","url":null,"abstract":"Nuclear inositides are independently regulated and their regulation is totally independent from the plasma membrane counterpart, suggesting that the nucleus constitutes a functionally distinct compartment of inositol lipids metabolism. This suggests that nuclear inositol lipids themselves can modulate nuclear processes as important as transcription and pre-mRNA splicing, growth, proliferation, cell cycle regulation and differentiation. Phospholipase C β1 (PLCβ1) is a key molecule for nuclear inositide signaling. Very recently it has been highlighted that the role of PLCβ1 during erythropoiesis is linked to that of miR-210. Moreover PLCβ1 signaling is linked to gene regulation and changes in microRNAs (miRNAs) occurs with PLCβ1 expression. Molecular targets of PLCβ1 have been found to be important during myogenesis and hematopoiesis. In addition, PLCβ1 signaling has been demonstrated to be impaired in diseases affecting both myogenic differentiation and affecting the hematopoietic system.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66657037","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
microRNAs control the function of telomeres in cancer microRNAs在癌症中控制端粒的功能
RNA & disease (Houston, Tex.) Pub Date : 2014-10-27 DOI: 10.14800/RD.282
Roberto Dinami, E. Petti, Rosanna Sestito, R. Benetti, Stefan Schoeftner
{"title":"microRNAs control the function of telomeres in cancer","authors":"Roberto Dinami, E. Petti, Rosanna Sestito, R. Benetti, Stefan Schoeftner","doi":"10.14800/RD.282","DOIUrl":"https://doi.org/10.14800/RD.282","url":null,"abstract":"Telomeres are located at the end of chromosomes and consist of DNA tandem repeats that recruit the specialized protein complex “shelterin”. Shelterin has a crucial role in controlling chromosome end protection, telomere recombination and telomere length. Telomeres shorten with every cell division, finally leading to telomere-dysfunction and the induction of senescence or apoptosis. Cancer formation is paralleled by a change in telomere regulation. Re-activation of telomerase ensures the maintenance of telomere function to facilitate unlimited proliferative potential. Importantly, aberrant function of the shelterin complex contributes to tumor formation and genomic instability in human cancer. miRNAs are important regulators of central cancer pathways and are of high clinical relevance. We recently showed that the onco-microRNA miR-155 controls the expression of TRF1 in human breast cancer to promote increased telomere fragility and genomic instability. Importantly, low TRF1 expression correlates with poor prognosis in estrogen receptor positive cancer patients, underlining the clinical relevance of miR-155 dependent regulation of TRF1 in human breast cancer. Our work suggests that multiple miRNAs exist that control telomere function in telomere related pathologies. Identification and functional validation of “telo-miRNAs” is expected to open new avenues in the understanding of telomere related maladies such as cancer and aging.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":"1-5"},"PeriodicalIF":0.0,"publicationDate":"2014-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66656866","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
MiR-92a - a key player in cardiovascular remodeling MiR-92a -心血管重塑的关键参与者
RNA & disease (Houston, Tex.) Pub Date : 2014-10-27 DOI: 10.14800/RD.371
J. Dutzmann, J. Daniel, J. Bauersachs, D. Sedding
{"title":"MiR-92a - a key player in cardiovascular remodeling","authors":"J. Dutzmann, J. Daniel, J. Bauersachs, D. Sedding","doi":"10.14800/RD.371","DOIUrl":"https://doi.org/10.14800/RD.371","url":null,"abstract":"Small non-coding, highly conserved microRNAs (miRs) play a crucial role in gene regulation, especially in post-transcriptional gene silencing, and are important for vascular homeostasis as well as during pathophysiological vascular remodeling processes. MiR-92a is known to attenuate endothelial cell proliferation, and angiogenesis. Conversely, down regulation of miR-92a improves these endothelial cell-dependent processes. We recently showed that inhibition of miR-92a also accelerates the re-endothelialization process and thus prevents neointima formation following wire-induced injury of murine femoral arteries. Thus, inhibition of miR-92a may represent a promising therapeutic strategy for the treatment of vascular diseases.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-10-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66657112","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Role of noncoding RNAs in diseases 非编码rna在疾病中的作用
RNA & disease (Houston, Tex.) Pub Date : 2014-10-21 DOI: 10.14800/RD.355
Beena Kadakkuzha
{"title":"Role of noncoding RNAs in diseases","authors":"Beena Kadakkuzha","doi":"10.14800/RD.355","DOIUrl":"https://doi.org/10.14800/RD.355","url":null,"abstract":"Abstract: Most of the fundamental biological processes involve the interaction between various protein-coding and noncoding RNAs, and the RNA-binding proteins associated with them. The RNA-protein interactions results in the formation of ribonucleoprotein complexes (RNPs) and altercations in the levels and structure of either can affect the associated cellular function.  Recent studies suggest that non-protein coding share of the genome is aggressively involved in multiple functions, ranging from gene expression, chromatin modification, to cell proliferation and involved in a wide range of diseases. Further studies on the mechanisms by which ncRNAs operate would yield a wealth of information regarding their functional role and the growing understanding of RNA biology to develop new RNA-based tools for developing therapeutics.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-10-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66657022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
miR-126 and miR-223 as biomarkers of vascular damage in the course of Chronic Kidney Disease miR-126和miR-223作为慢性肾病过程中血管损伤的生物标志物
RNA & disease (Houston, Tex.) Pub Date : 2014-09-25 DOI: 10.14800/RD.347
V. L. Meuth, Z. Massy, L. Metzinger
{"title":"miR-126 and miR-223 as biomarkers of vascular damage in the course of Chronic Kidney Disease","authors":"V. L. Meuth, Z. Massy, L. Metzinger","doi":"10.14800/RD.347","DOIUrl":"https://doi.org/10.14800/RD.347","url":null,"abstract":"Development of disease is often due to deregulation of gene expression. The gene program is controlled at the post-transcriptional level by the action of small non-coding RNAs known as microRNAs (miRNAs), short, single-stranded molecules that control mRNA stability or translational repression via base pairing with regions in the 3' untranslated region of their target mRNAs. Over the last decade, considerable progress has been made to elucidate the roles of miRNAs in vascular pathogenesis and develop the use of miRNAs as innovative biomarkers in diagnostics, and as groundbreaking drugs in pharmacological treatments. It has been recently shown that several miRNAs are implicated in the course of chronic kidney disease (CKD) and are associated with vessel damage, such as vascular calcifications and atherosclerosis. The inflammatory miR-223 is increased in vitro in vascular smooth muscle cells subjected to uremic toxins and is also increased in vivo in more advanced stages of CKD. The endothelial-specific miR-126 is involved in vascular remodeling in response to laminar shear stress in HUVEC cells. Finally, miR-126 levels have been found to be deregulated in murine and human serum in the course of experimental CKD and in human diabetic patients. In conclusion, these miRNAs could play a role in CKD vascular remodeling and may therefore represent useful targets to prevent or treat complications of CKD.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66656948","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Bone metastatic prostate cancer and resistance to tyrosine kinase inhibitors: an intimate relationship between loss of miR-203 and up-regulation of EGFR signaling 骨转移性前列腺癌与酪氨酸激酶抑制剂耐药:miR-203缺失与EGFR信号上调之间的密切关系
RNA & disease (Houston, Tex.) Pub Date : 2014-09-25 DOI: 10.14800/RD.345
W. Abou-Kheir, T. Mouhieddine, Muhieddine M. Itani, Yen-Nien Liu
{"title":"Bone metastatic prostate cancer and resistance to tyrosine kinase inhibitors: an intimate relationship between loss of miR-203 and up-regulation of EGFR signaling","authors":"W. Abou-Kheir, T. Mouhieddine, Muhieddine M. Itani, Yen-Nien Liu","doi":"10.14800/RD.345","DOIUrl":"https://doi.org/10.14800/RD.345","url":null,"abstract":"A tumor suppressor role for miR-203 in RAS-dependent prostate cancer metastasis has been described recently by our group.  We have explored the regulatory mechanisms by which miR-203 is being regulated through EGFR signaling. We investigated the molecular mechanism of metastasis and identified novel roles of genes that interact with miR-203 downstream of activated Ras. We showed an amplifying regulatory loop involving the direct interaction of miR-203 with the EGFR ligands, AREG, EREG, and TGFA 3’UTR. Using clinical specimens and database analysis, our data suggested that decreasing miR-203 and increasing EGFR ligands, AREG, EREG, and TGFA expressions are correlated with prostate cancer progression. Since tyrosine kinase inhibitors (TKIs) have been shown to inhibit tyrosine phosphorylation of EGFR in a dose-dependent manner, we examined a role for miR-203 in TKIs-induced apoptosis in RAS-activated prostate cancer. We investigated the mechanisms by which miR-203 overexpression contributes to TKIs-resistant RAS-activated prostate cancer cells apoptosis. We have shown indications for candidate miR-203 targets that are either influenced by anti-apoptotic proteins (e.g. API5, BIRC2, and TRIAP1) or positively influenced by a novel NF-κB-inducible oncogenic molecule, TNFAIP8. These observations suggest that the latter category may be synergistically affected by the regulatory loop of miR-203 depletion and anti-apoptotic proteins overexpression. Our results provided evidence showing a role of miR-203 in regulating the expression of EGFR signaling genes in response to TKIs-resistance during prostate cancer progression.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66656911","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
Identification of microRNAs from Atlantic salmon macrophages upon Aeromonas salmonicida infection 大西洋鲑鱼巨噬细胞感染沙门氏气单胞菌的microrna鉴定
RNA & disease (Houston, Tex.) Pub Date : 2014-09-25 DOI: 10.14800/RD.303
V. I. HairulIslam, S. Saravanan, D. Sekar, K. Karikalan, P. Senthilkumar, Ravi Chandrika Chandrika, K. Thirugnanasambantham
{"title":"Identification of microRNAs from Atlantic salmon macrophages upon Aeromonas salmonicida infection","authors":"V. I. HairulIslam, S. Saravanan, D. Sekar, K. Karikalan, P. Senthilkumar, Ravi Chandrika Chandrika, K. Thirugnanasambantham","doi":"10.14800/RD.303","DOIUrl":"https://doi.org/10.14800/RD.303","url":null,"abstract":"Computational approach was used in to identify potent macrophage specific miRNAs involved in basic biological process of Salmo salar. Analysis of 1119 ESTs from macrophages of Atlantic salmon (Salmo salar) infected with Aeromonas salmonicida revealed expression of 3 miRNAs. Phylogenetic analysis of both the pre-miRNA sequence revealed its evolutionarily conserved nature among various species. Identified targets of the predicted miRNAs revealed the role of miRNA in pathogenesis, stress response and allosteric exchange of histones. Further detailed studies of these miRNAs will help in revealing its function in different biological process necessary for the action of macrophages upon pathogen infection.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66656902","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
Expression pattern of the microRNA miR-1 in ovarian cancer cell lines and tumor tissue samples implies a loss of miR-1's tumor suppressor properties microRNA miR-1在卵巢癌细胞系和肿瘤组织样本中的表达模式表明miR-1的肿瘤抑制特性的丧失
RNA & disease (Houston, Tex.) Pub Date : 2014-09-25 DOI: 10.14800/RD.348
M. Stope, S. Delogu, K. Diesing, Gerd Klinkmann, M. Evert, D. Koensgen, M. Zygmunt, M. Burchardt, A. Mustea
{"title":"Expression pattern of the microRNA miR-1 in ovarian cancer cell lines and tumor tissue samples implies a loss of miR-1's tumor suppressor properties","authors":"M. Stope, S. Delogu, K. Diesing, Gerd Klinkmann, M. Evert, D. Koensgen, M. Zygmunt, M. Burchardt, A. Mustea","doi":"10.14800/RD.348","DOIUrl":"https://doi.org/10.14800/RD.348","url":null,"abstract":"Despite ovarian cancer (OC) represents the leading cause of death in gynecology, however, current understanding of the molecular machinery governing initiation, development and recurrence of the tumor is still limited. Particularly, lack of specific biomarkers defining the complex states of OC limits effective diagnosis and prognosis and, subsequently, hinders appropriate therapy strategies for OC patients. MicroRNA (miR) are small non-coding, regulatory RNA molecules which have critical functions in tumor biology, and which have been functionally grouped into tumor suppressive and tumor promoting miR. miR-1 has been described operating as a tumor suppressor which attenuates proliferation and progression in divers solid cancer entities. Currently, there are no data available concerning miR-1 functionality in progression of OC, particularly, in regard to its potentialas a biomarker for OC diagnosis and treatment. Therefore, the present study examined miR-1 expression levels in established OC cell lines as well as in tissue samples from primary and relapsed OC patients to get a first understanding of putative miR-1 properties in OC progression. Notably, we found miR-1 in OC cell lines was linked to higher cell growth rates. Moreover, analysis of patient samples revealed miR-1 levels in relapsed tumors appeared being up-regulated compared to primary tumors. The findings of our preliminary study (1) may suggest a novel role of miR-1 in OC as a promotor of cancer progression or (2) exhibit a dysregulation of miR-1 functions by a so far unknown disruption of miR-1 regulatory cascades.","PeriodicalId":90965,"journal":{"name":"RNA & disease (Houston, Tex.)","volume":"123 10 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2014-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"66656958","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
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